Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g48133 Chara braunii HOM05D004390 ORTHO05D004950 1.5e-47 192.6 104 100.0
PRCOL_00005433 Prasinoderma coloniale HOM05D004390 ORTHO05D004950 9.0e-16 87.0 68 61.8
THA.LOC104824892 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 3.4e-15 85.1 73 56.2
THA.LOC104824896 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 3.4e-15 85.1 73 56.2
THA.LOC104824895 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 4.5e-15 84.7 73 56.2
THA.LOC109116235 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 4.5e-15 84.7 73 56.2
THA.LOC104824898 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 5.9e-15 84.3 73 56.2
FvH4_4g23930 Fragaria vesca HOM05D004390 ORTHO05D004950 1.7e-14 82.8 96 50.0
FAN12G2113 Fragaria x ananassa HOM05D006059 ORTHO05D004950 1.7e-14 82.8 96 50.0
SpUn0131_0010 Schrenkiella parvula HOM05D004390 ORTHO05D004950 1.7e-14 82.8 73 53.4
FAN07G0791 Fragaria x ananassa HOM05D004390 ORTHO05D004950 2.2e-14 82.4 96 49.0
FAN17G1207 Fragaria x ananassa HOM05D004390 ORTHO05D004950 2.2e-14 82.4 96 49.0
FAN22G0688 Fragaria x ananassa HOM05D004390 ORTHO05D004950 2.2e-14 82.4 96 49.0
THA.LOC104824890 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 2.2e-14 82.4 73 54.8
SMO364G0480 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 2.9e-14 82.0 96 47.9
Aa31LG7G14400 Aethionema arabicum HOM05D004390 ORTHO05D004950 3.8e-14 81.6 73 52.1
Thhalv10027263m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 3.8e-14 81.6 73 53.4
Phvul.001G260900 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 3.8e-14 81.6 69 50.7
Aa31LG7G15420 Aethionema arabicum HOM05D004390 ORTHO05D004950 5.0e-14 81.3 73 50.7
Carub.0007s0202 Capsella rubella HOM05D004390 ORTHO05D004950 5.0e-14 81.3 73 53.4
MELO3C011874.2 Cucumis melo HOM05D004390 ORTHO05D004950 5.0e-14 81.3 94 46.8
Duzib268G0993 Durio zibethinus HOM05D004390 ORTHO05D004950 5.0e-14 81.3 69 55.1
Glyma.05G146700 Glycine max HOM05D004390 ORTHO05D004950 5.0e-14 81.3 69 52.2
Glyma.08G103600 Glycine max HOM05D004390 ORTHO05D004950 5.0e-14 81.3 69 52.2
Glyma.11G249600 Glycine max HOM05D004390 ORTHO05D004950 5.0e-14 81.3 69 52.2
Nn4g22350 Nelumbo nucifera HOM05D004390 ORTHO05D004950 5.0e-14 81.3 69 52.2
AUR62024125 Chenopodium quinoa HOM05D004390 ORTHO05D004950 6.5e-14 80.9 69 53.6
Hma1.2p1_0065F.1_g035640 Hydrangea macrophylla HOM05D004390 ORTHO05D004950 6.5e-14 80.9 67 52.2
Manes.12G012800 Manihot esculenta HOM05D004390 ORTHO05D004950 6.5e-14 80.9 73 54.8
Mapoly0041s0086 Marchantia polymorpha HOM05D004390 ORTHO05D004950 6.5e-14 80.9 93 45.2
Medtr3g085510 Medicago truncatula HOM05D004390 ORTHO05D004950 6.5e-14 80.9 69 53.6
A01p00960 Brassica napus HOM05D004390 ORTHO05D004950 8.5e-14 80.5 73 53.4
A09p57580 Brassica napus HOM05D004390 ORTHO05D004950 8.5e-14 80.5 73 50.7
BraA01t00094Z Brassica rapa HOM05D004390 ORTHO05D004950 8.5e-14 80.5 73 53.4
ATR0561G166 Amborella trichopoda HOM05D004390 ORTHO05D004950 1.1e-13 80.1 67 50.7
AL7G12360 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 1.1e-13 80.1 73 52.1
BraA09t41150Z Brassica rapa HOM05D004390 ORTHO05D004950 1.1e-13 80.1 73 49.3
CARHR246620 Cardamine hirsuta HOM05D004390 ORTHO05D004950 1.1e-13 80.1 86 44.2
Glyma.18G007600 Glycine max HOM05D004390 ORTHO05D004950 1.1e-13 80.1 69 50.7
Gorai.008G164900 Gossypium raimondii HOM05D004390 ORTHO05D004950 1.1e-13 80.1 73 52.1
PSO478G0183 Papaver somniferum HOM05D004390 ORTHO05D004950 1.1e-13 80.1 67 53.7
Sc11g0000500 Simmondsia chinensis HOM05D004390 ORTHO05D004950 1.1e-13 80.1 73 50.7
C08p40770 Brassica napus HOM05D004390 ORTHO05D004950 1.4e-13 79.7 73 49.3
CARHR113610 Cardamine hirsuta HOM05D004390 ORTHO05D004950 1.4e-13 79.7 73 50.7
ClCG11G013760 Citrullus lanatus HOM05D004390 ORTHO05D004950 1.4e-13 79.7 94 46.8
CsaV3_5G030350 Cucumis sativus L. HOM05D004390 ORTHO05D004950 1.4e-13 79.7 94 46.8
Dinv14827 Davidia involucrata HOM05D001171 ORTHO05D001872 1.9e-13 79.3 73 49.3
Lsat_1_v5_gn_3_29821 Lactuca sativa HOM05D004390 ORTHO05D004950 1.9e-13 79.3 69 50.7
PSO017G1102 Papaver somniferum HOM05D004390 ORTHO05D004950 1.9e-13 79.3 67 52.2
Duzib248G1577 Durio zibethinus HOM05D004390 ORTHO05D004950 2.5e-13 79.0 94 44.7
Pp3c4_12150 Physcomitrium patens HOM05D004390 ORTHO05D004950 2.5e-13 79.0 103 41.7
TWI36G1003 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 2.5e-13 79.0 86 46.5
AT2G22425 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 3.2e-13 78.6 73 49.3
CANSAT80G1060 Cannabis sativa HOM05D004390 ORTHO05D004950 3.2e-13 78.6 95 41.1
Lsat_1_v5_gn_8_149361 Lactuca sativa HOM05D004390 ORTHO05D004950 3.2e-13 78.6 73 50.7
Pp3c10_14440 Physcomitrium patens HOM05D004390 ORTHO05D004950 3.2e-13 78.6 100 44.0
TWI18G1082 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 3.2e-13 78.6 86 44.2
TWI75G0215 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 3.2e-13 78.6 86 45.3
GSVIVG01010448001 Vitis vinifera HOM05D004390 ORTHO05D004950 3.2e-13 78.6 67 52.2
Gohir.A01G155400 Gossypium hirsutum HOM05D004390 ORTHO05D004950 4.2e-13 78.2 86 43.0
Sed0024223 Sechium edule HOM05D004390 ORTHO05D004950 4.2e-13 78.2 95 45.3
AT4G40042 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 5.5e-13 77.8 73 50.7
BcaC07g41074 Brassica carinata HOM05D004390 ORTHO05D004950 5.5e-13 77.8 73 47.9
BolC8t51641H Brassica oleracea HOM05D004390 ORTHO05D004950 5.5e-13 77.8 73 47.9
CARHR089330 Cardamine hirsuta HOM05D004390 ORTHO05D004950 5.5e-13 77.8 69 52.2
Cpa.g.sc34.218 Carica papaya HOM05D004390 ORTHO05D004950 5.5e-13 77.8 94 42.6
Gohir.D12G152500 Gossypium hirsutum HOM05D004390 ORTHO05D004950 5.5e-13 77.8 73 50.7
Lj7E465T0 Lonicera japonica HOM05D004390 ORTHO05D004950 7.2e-13 77.4 69 49.3
Phvul.002G174400 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 7.2e-13 77.4 67 50.7
BcaNung00935 Brassica carinata HOM05D004390 ORTHO05D004950 9.4e-13 77.0 99 44.4
BolC1t00106H Brassica oleracea HOM05D004390 ORTHO05D004950 9.4e-13 77.0 99 44.4
Lj4g0026719 Lotus japonicus HOM05D004390 ORTHO05D004950 9.4e-13 77.0 69 50.7
QL12p006243 Quercus lobata HOM05D004390 ORTHO05D004950 9.4e-13 77.0 69 49.3
Ca_18042_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 1.2e-12 76.6 73 52.1
ECA233G0624 Erigeron canadensis HOM05D004390 ORTHO05D004950 1.2e-12 76.6 73 47.9
ECA240G0924 Erigeron canadensis HOM05D004390 ORTHO05D004950 1.2e-12 76.6 73 47.9
HanXRQChr08g0207731 Helianthus annuus HOM05D004390 ORTHO05D004950 1.2e-12 76.6 69 47.8
Psat4g014960 Pisum sativum HOM05D004390 ORTHO05D004950 1.2e-12 76.6 73 52.1
Aqoxy5G03398 Aquilegia oxysepala HOM05D004390 ORTHO05D004950 1.6e-12 76.3 69 50.7
Carub.0004s0159 Capsella rubella HOM05D004390 ORTHO05D004950 1.6e-12 76.3 73 47.9
DCAR_007008 Daucus carota HOM05D004390 ORTHO05D004950 1.6e-12 76.3 94 43.6
Gohir.A12G148600 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.6e-12 76.3 96 42.7
Prupe.1G228300 Prunus persica HOM05D004390 ORTHO05D004950 1.6e-12 76.3 95 43.2
AL4G11930 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 2.1e-12 75.9 86 40.7
arahy.Tifrunner.gnm1.ann1.FA6GLZ Arachis hypogaea HOM05D004390 ORTHO05D004950 2.1e-12 75.9 69 47.8
EL10Ac6g13484 Beta vulgaris HOM05D004390 ORTHO05D004950 2.1e-12 75.9 95 43.2
Cfa009329 Carpinus fangiana HOM05D004390 ORTHO05D004950 2.1e-12 75.9 89 40.4
Psat5g095200 Pisum sativum HOM05D004390 ORTHO05D004950 2.1e-12 75.9 69 50.7
Sp7g35820 Schrenkiella parvula HOM05D004390 ORTHO05D004950 2.1e-12 75.9 89 42.7
Hund25458 Selenicereus undatus HOM05D004390 ORTHO05D004950 2.1e-12 75.9 96 42.7
CiPaw.06G101400 Carya illinoinensis HOM05D004390 ORTHO05D004950 2.7e-12 75.5 89 42.7
Cc09_g06290 Coffea canephora HOM05D015856 ORTHO05D004950 2.7e-12 75.5 95 41.1
Haze_10374 Corylus avellana HOM05D004390 ORTHO05D004950 2.7e-12 75.5 89 40.4
Thhalv10000378m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 2.7e-12 75.5 73 49.3
Medtr8g080380 Medicago truncatula HOM05D004390 ORTHO05D004950 2.7e-12 75.5 91 42.9
Ah.02g130970 Amaranthus hybridus HOM05D004390 ORTHO05D004950 3.6e-12 75.1 69 47.8
Cc11_g00910 Coffea canephora HOM05D004390 ORTHO05D004950 3.6e-12 75.1 94 44.7
Gohir.D01G154700 Gossypium hirsutum HOM05D004390 ORTHO05D004950 3.6e-12 75.1 99 42.4
Gorai.002G191500 Gossypium raimondii HOM05D004390 ORTHO05D004950 3.6e-12 75.1 99 42.4
CSS0004094 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 4.6e-12 74.7 73 49.3
CSS0048605 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 4.6e-12 74.7 73 49.3
Ca_16468_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 4.6e-12 74.7 69 49.3
Nn3g16498 Nelumbo nucifera HOM05D004390 ORTHO05D004950 4.6e-12 74.7 69 46.4
Os12g0438900 Oryza sativa ssp. japonica HOM05D004390 ORTHO05D004950 4.6e-12 74.7 97 42.3
arahy.Tifrunner.gnm1.ann1.L53BL2 Arachis hypogaea HOM05D004390 ORTHO05D004950 6.1e-12 74.3 67 47.8
BcaB08g35066 Brassica carinata HOM05D004390 ORTHO05D004950 6.1e-12 74.3 73 47.9
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 6.1e-12 74.3 75 44.0
Eucgr.B03484 Eucalyptus grandis HOM05D004390 ORTHO05D004950 6.1e-12 74.3 99 41.4
Oeu058917.1 Olea europaea HOM05D004390 ORTHO05D004950 6.1e-12 74.3 67 46.3
SMO145G0172 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 6.1e-12 74.3 70 50.0
SEGI_16803 Sequoiadendron giganteum HOM05D004390 ORTHO05D004950 6.1e-12 74.3 104 42.3
Thecc.02G210700 Theobroma cacao HOM05D004390 ORTHO05D004950 6.1e-12 74.3 94 42.6
HPP92_024163 Vanilla planifolia HOM05D000064 ORTHO05D000281 6.1e-12 74.3 69 46.4
HPP92_024177 Vanilla planifolia HOM05D004390 ORTHO05D004950 6.1e-12 74.3 69 46.4
Aa31LG6G15170 Aethionema arabicum HOM05D004390 ORTHO05D004950 7.9e-12 73.9 73 46.6
ClCG09G006830 Citrullus lanatus HOM05D004390 ORTHO05D004950 7.9e-12 73.9 94 42.6
QL03p053718 Quercus lobata HOM05D004390 ORTHO05D004950 7.9e-12 73.9 94 42.6
COL.COLO4_20382 Corchorus olitorius HOM05D001171 ORTHO05D001872 1.0e-11 73.6 90 42.2
Duzib251G0716 Durio zibethinus HOM05D004390 ORTHO05D004950 1.0e-11 73.6 94 43.6
Thhalv10021836m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.0e-11 73.6 69 47.8
PGR102G2095 Punica granatum HOM05D004390 ORTHO05D004950 1.0e-11 73.6 99 44.4
TAR371G0820 Trochodendron aralioides HOM05D004390 ORTHO05D004950 1.0e-11 73.6 94 41.5
Atru.chr11.2308 Acer truncatum HOM05D004390 ORTHO05D004950 1.4e-11 73.2 73 47.9
Potri.008G175775 Populus trichocarpa HOM05D004390 ORTHO05D004950 1.4e-11 73.2 94 39.4
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 1.8e-11 72.8 73 49.3
CAN.G638.34 Capsicum annuum HOM05D004390 ORTHO05D004950 1.8e-11 72.8 69 44.9
Migut.E00025 Erythranthe guttata HOM05D004390 ORTHO05D004950 1.8e-11 72.8 94 40.4
arahy.Tifrunner.gnm1.ann1.CM82MG Arachis hypogaea HOM05D004390 ORTHO05D004950 2.3e-11 72.4 91 41.8
Nitab4.5_0000379g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 2.3e-11 72.4 95 38.9
Sabra08G0134000 Salix brachista HOM05D004390 ORTHO05D004950 2.3e-11 72.4 94 39.4
TAR629G1658 Trochodendron aralioides HOM05D004390 ORTHO05D004950 2.3e-11 72.4 69 44.9
Zm00001eb052740 Zea mays HOM05D004390 ORTHO05D004950 2.3e-11 72.4 97 40.2
Potri.010G059300 Populus trichocarpa HOM05D004390 ORTHO05D004950 3.9e-11 71.6 94 41.5
Nitab4.5_0000367g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 5.1e-11 71.2 95 37.9
Actinidia09657 Actinidia chinensis HOM05D004390 ORTHO05D004950 6.7e-11 70.9 86 39.5
Actinidia20702 Actinidia chinensis HOM05D004390 ORTHO05D004950 6.7e-11 70.9 86 39.5
Rhsim10G0039200 Rhododendron simsii HOM05D004390 ORTHO05D004950 6.7e-11 70.9 86 41.9
Actinidia08077 Actinidia chinensis HOM05D001171 ORTHO05D001872 1.1e-10 70.1 89 39.3
Migut.K00715 Erythranthe guttata HOM05D004390 ORTHO05D004950 1.1e-10 70.1 67 41.8
Nitab4.5_0002210g0100 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.1e-10 70.1 73 43.8
TAR622G0138 Trochodendron aralioides HOM05D004390 ORTHO05D004950 1.1e-10 70.1 94 40.4
Zm00001eb218300 Zea mays HOM05D004390 ORTHO05D004950 1.1e-10 70.1 99 42.4
PSO063G2970 Papaver somniferum HOM05D004390 ORTHO05D004950 1.5e-10 69.7 69 46.4
Peaxi162Scf00128g01124 Petunia axillaris HOM05D004390 ORTHO05D004950 1.5e-10 69.7 95 37.9
MCO16G111 Micromonas commoda HOM05D004390 ORTHO05D004950 2.0e-10 69.3 99 39.4
TPR.G28271 Trifolium pratense HOM05D004390 ORTHO05D004950 2.0e-10 69.3 69 49.3
CSS0024228 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 2.5e-10 68.9 73 45.2
PSO782G4737 Papaver somniferum HOM05D004390 ORTHO05D004950 2.5e-10 68.9 69 44.9
MBI11_g07456_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 3.3e-10 68.6 94 40.4
Nitab4.5_0000592g0450 Nicotiana tabacum HOM05D004390 ORTHO05D004950 3.3e-10 68.6 86 37.2
Sopen03g001750 Solanum pennellii HOM05D004390 ORTHO05D004950 3.3e-10 68.6 69 42.0
MBI13_g26147_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 5.7e-10 67.8 69 40.6
TPR.G10940 Trifolium pratense HOM05D004390 ORTHO05D004950 5.7e-10 67.8 64 50.0
RcHm_v2.0_Chr4g0430591 Rosa chinensis HOM05D004390 ORTHO05D004950 7.4e-10 67.4 83 45.8
Lalb_Chr07g0187411 Lupinus albus HOM05D004390 ORTHO05D004950 9.7e-10 67.0 56 50.0
Carub.0003s1416 Capsella rubella HOM05D004390 ORTHO05D004950 1.7e-09 66.2 69 40.6
ATR1098G064 Amborella trichopoda HOM05D004390 ORTHO05D004950 2.2e-09 65.9 67 44.8
Rhsim12G0027700 Rhododendron simsii HOM05D004390 ORTHO05D004950 3.7e-09 65.1 69 43.5
MBI05_g44034_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 1.1e-08 63.5 67 40.3
Lalb_Chr12g0206281 Lupinus albus HOM05D004390 ORTHO05D004950 6.9e-08 60.8 60 50.0
MD13G1117200 Malus domestica HOM05D004390 ORTHO05D004950 1.2e-07 60.1 60 46.7
SMO197G0059 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 2.0e-07 59.3 62 41.9
Sp3g12740 Schrenkiella parvula HOM05D004390 ORTHO05D004950 5.9e-07 57.8 61 42.6
CiPaw.05G111600 Carya illinoinensis HOM05D004390 ORTHO05D004950 2.9e-06 55.5 76 40.8
MBI07_g16243_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D004950 3.8e-06 55.1 58 39.7
SEGI_01546 Sequoiadendron giganteum HOM05D007557 ORTHO05D009573 3.8e-06 55.1 78 41.0
Lalb_Chr22g0358881 Lupinus albus HOM05D004390 ORTHO05D004950 6.5e-06 54.3 39 53.8
Manes.13G018500 Manihot esculenta HOM05D004390 ORTHO05D004950 6.5e-06 54.3 69 40.6


User provided reference genes

Program Settings