Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g48001 Chara braunii HOM05D003018 ORTHO05D003402 2.7e-52 208.8 135 100.0
Oeu017358.1 Olea europaea HOM05D003018 ORTHO05D003402 8.1e-17 90.9 66 69.7
DCAR_010557 Daucus carota HOM05D003018 ORTHO05D003402 1.1e-16 90.5 57 75.4
TPR.G35918 Trifolium pratense HOM05D003018 ORTHO05D003402 1.1e-16 90.5 63 69.8
TAR374G1266 Trochodendron aralioides HOM05D003018 ORTHO05D003402 1.1e-16 90.5 58 74.1
CiPaw.06G038200 Carya illinoinensis HOM05D003018 ORTHO05D003402 1.4e-16 90.1 57 77.2
PSO017G1017 Papaver somniferum HOM05D003018 ORTHO05D003402 1.8e-16 89.7 56 75.0
PSO478G2764 Papaver somniferum HOM05D003018 ORTHO05D003402 1.8e-16 89.7 56 75.0
Nitab4.5_0007121g0040 Nicotiana tabacum HOM05D003018 ORTHO05D003402 2.4e-16 89.4 65 69.2
HanXRQChr16g0499771 Helianthus annuus HOM05D003018 ORTHO05D003402 3.1e-16 89.0 64 70.3
CARHR158570 Cardamine hirsuta HOM05D003018 ORTHO05D003402 4.0e-16 88.6 66 69.7
Gohir.D12G245300 Gossypium hirsutum HOM05D003018 ORTHO05D003402 4.0e-16 88.6 63 69.8
Gorai.008G262900 Gossypium raimondii HOM05D003018 ORTHO05D003402 4.0e-16 88.6 63 69.8
HanXRQChr10g0283991 Helianthus annuus HOM05D003018 ORTHO05D003402 4.0e-16 88.6 61 70.5
MBI07_g11061_MAGBIO Magnolia biondii HOM05D003018 ORTHO05D003402 4.0e-16 88.6 58 74.1
PGR142G0210 Punica granatum HOM05D003018 ORTHO05D003402 4.0e-16 88.6 56 75.0
SGA_v2.0_scaffold165G38214 Striga asiatica HOM05D003018 ORTHO05D003402 4.0e-16 88.6 57 73.7
MD07G1303500 Malus domestica HOM05D003018 ORTHO05D003402 5.3e-16 88.2 64 68.8
Mapoly0083s0018 Marchantia polymorpha HOM05D003018 ORTHO05D003402 5.3e-16 88.2 50 84.0
Potri.015G000600 Populus trichocarpa HOM05D003018 ORTHO05D003402 5.3e-16 88.2 57 73.7
Prupe.2G322200 Prunus persica HOM05D003018 ORTHO05D003402 5.3e-16 88.2 64 68.8
TWI39G0588 Tripterygium wilfordii HOM05D003018 ORTHO05D003402 5.3e-16 88.2 64 71.9
Aqoxy5G02912 Aquilegia oxysepala HOM05D003018 ORTHO05D003402 6.9e-16 87.8 57 71.9
Glyma.04G225600 Glycine max HOM05D003018 ORTHO05D003402 6.9e-16 87.8 57 75.4
Gohir.A11G017100 Gossypium hirsutum HOM05D003018 ORTHO05D003402 6.9e-16 87.8 57 73.7
Gohir.D11G016900 Gossypium hirsutum HOM05D003018 ORTHO05D003402 6.9e-16 87.8 57 73.7
Lalb_Chr08g0239401 Lupinus albus HOM05D003018 ORTHO05D003402 6.9e-16 87.8 65 70.8
Os04g0405100 Oryza sativa ssp. japonica HOM05D003018 ORTHO05D003402 6.9e-16 87.8 57 77.2
Potri.012G004600 Populus trichocarpa HOM05D003018 ORTHO05D003402 6.9e-16 87.8 57 75.4
HPP92_007053 Vanilla planifolia HOM05D003018 ORTHO05D003402 6.9e-16 87.8 58 74.1
Actinidia08721 Actinidia chinensis HOM05D003018 ORTHO05D003402 9.0e-16 87.4 49 83.7
Actinidia34288 Actinidia chinensis HOM05D003018 ORTHO05D003402 9.0e-16 87.4 49 83.7
arahy.Tifrunner.gnm1.ann1.KA8TW6 Arachis hypogaea HOM05D003018 ORTHO05D003402 9.0e-16 87.4 63 68.3
CSS0041512 Camellia sinensis var. sinensis HOM05D003018 ORTHO05D003402 9.0e-16 87.4 56 73.2
AUR62028118 Chenopodium quinoa HOM05D003018 ORTHO05D003402 9.0e-16 87.4 57 73.7
Eucgr.K00480 Eucalyptus grandis HOM05D003018 ORTHO05D003402 9.0e-16 87.4 56 75.0
Eucgr.K00528 Eucalyptus grandis HOM05D003018 ORTHO05D003402 9.0e-16 87.4 56 75.0
Thhalv10010930m.g Eutrema salsugineum HOM05D003018 ORTHO05D003402 9.0e-16 87.4 56 76.8
Gohir.A12G244400 Gossypium hirsutum HOM05D003018 ORTHO05D003402 9.0e-16 87.4 57 73.7
ATR0582G341 Amborella trichopoda HOM05D003018 ORTHO05D003402 1.2e-15 87.0 58 72.4
AUR62005947 Chenopodium quinoa HOM05D003018 ORTHO05D003402 1.2e-15 87.0 57 73.7
CsaV3_5G000150 Cucumis sativus L. HOM05D003018 ORTHO05D003402 1.2e-15 87.0 57 71.9
MD01G1231500 Malus domestica HOM05D003018 ORTHO05D003402 1.2e-15 87.0 57 71.9
Medtr3g093380 Medicago truncatula HOM05D003018 ORTHO05D003402 1.2e-15 87.0 57 71.9
Nn2g15903 Nelumbo nucifera HOM05D003018 ORTHO05D003402 1.2e-15 87.0 57 73.7
PGR042G2079 Punica granatum HOM05D003018 ORTHO05D003402 1.2e-15 87.0 56 75.0
arahy.Tifrunner.gnm1.ann1.SR3247 Arachis hypogaea HOM05D003018 ORTHO05D003402 1.5e-15 86.7 63 68.3
Migut.F00122 Erythranthe guttata HOM05D003018 ORTHO05D003402 1.5e-15 86.7 57 71.9
Sed0018717 Sechium edule HOM05D003018 ORTHO05D003402 1.5e-15 86.7 56 75.0
Zm00001eb181270 Zea mays HOM05D003018 ORTHO05D003402 1.5e-15 86.7 50 82.0
BcaC07g39417 Brassica carinata HOM05D003018 ORTHO05D003402 2.0e-15 86.3 56 75.0
A06p18200 Brassica napus HOM05D003018 ORTHO05D003402 2.0e-15 86.3 56 75.0
BraA06t24904Z Brassica rapa HOM05D003018 ORTHO05D003402 2.0e-15 86.3 56 75.0
Duzib068G0518 Durio zibethinus HOM05D003018 ORTHO05D003402 2.0e-15 86.3 65 66.2
Duzib084G0455 Durio zibethinus HOM05D003018 ORTHO05D003402 2.0e-15 86.3 67 67.2
Duzib205G1477 Durio zibethinus HOM05D003018 ORTHO05D003402 2.0e-15 86.3 62 67.7
ECA232G4756 Erigeron canadensis HOM05D003018 ORTHO05D003402 2.0e-15 86.3 58 70.7
Eucgr.A00976 Eucalyptus grandis HOM05D003018 ORTHO05D003402 2.0e-15 86.3 56 75.0
Sed0009908 Sechium edule HOM05D003018 ORTHO05D003402 2.0e-15 86.3 57 70.2
Solyc03g079940.3 Solanum lycopersicum HOM05D003018 ORTHO05D003402 2.0e-15 86.3 56 73.2
Sopen03g027480 Solanum pennellii HOM05D003018 ORTHO05D003402 2.0e-15 86.3 56 73.2
Thecc.03G212100 Theobroma cacao HOM05D003018 ORTHO05D003402 2.0e-15 86.3 57 71.9
CDE06G0409 Ceratophyllum demersum HOM05D003018 ORTHO05D003402 2.6e-15 85.9 63 66.7
Glyma.06G139200 Glycine max HOM05D003018 ORTHO05D003402 2.6e-15 85.9 50 82.0
Manes.05G197500 Manihot esculenta HOM05D003018 ORTHO05D003402 2.6e-15 85.9 64 68.8
BcaB01g00697 Brassica carinata HOM05D003018 ORTHO05D003402 3.4e-15 85.5 50 82.0
C08p24540 Brassica napus HOM05D003018 ORTHO05D003402 3.4e-15 85.5 50 82.0
BolC8t50072H Brassica oleracea HOM05D003018 ORTHO05D003402 3.4e-15 85.5 50 82.0
CiPaw.05G208700 Carya illinoinensis HOM05D003018 ORTHO05D003402 3.4e-15 85.5 67 64.2
Psat5g071120 Pisum sativum HOM05D003018 ORTHO05D003402 3.4e-15 85.5 50 80.0
Sp5g12550 Schrenkiella parvula HOM05D003018 ORTHO05D003402 3.4e-15 85.5 50 82.0
Atru.chr12.2524 Acer truncatum HOM05D003018 ORTHO05D003402 4.5e-15 85.1 56 73.2
CANSAT21G0709 Cannabis sativa HOM05D003018 ORTHO05D003402 4.5e-15 85.1 50 78.0
Carub.0005s1589 Capsella rubella HOM05D003018 ORTHO05D003402 4.5e-15 85.1 56 71.4
Dinv17276 Davidia involucrata HOM05D003018 ORTHO05D003402 4.5e-15 85.1 57 70.2
Dinv29191 Davidia involucrata HOM05D003018 ORTHO05D003402 4.5e-15 85.1 57 70.2
RcHm_v2.0_Chr1g0383311 Rosa chinensis HOM05D003018 ORTHO05D003402 4.5e-15 85.1 50 78.0
SEGI_14341 Sequoiadendron giganteum HOM05D003018 ORTHO05D003402 4.5e-15 85.1 64 67.2
GSVIVG01038683001 Vitis vinifera HOM05D003018 ORTHO05D003402 4.5e-15 85.1 57 70.2
Aa31LG4G18050 Aethionema arabicum HOM05D003018 ORTHO05D003402 5.8e-15 84.7 56 73.2
AL6G36250 Arabidopsis lyrata HOM05D003018 ORTHO05D003402 5.8e-15 84.7 64 68.8
AT5G24650 Arabidopsis thaliana HOM05D003018 ORTHO05D003402 5.8e-15 84.7 64 68.8
MSTRG.26952 Avicennia marina HOM05D003018 ORTHO05D003402 5.8e-15 84.7 68 63.2
CARHR188810 Cardamine hirsuta HOM05D003018 ORTHO05D003402 5.8e-15 84.7 64 68.8
Thhalv10004788m.g Eutrema salsugineum HOM05D003018 ORTHO05D003402 5.8e-15 84.7 64 68.8
SalBow4G0431 Salvia bowleyana HOM05D003018 ORTHO05D003402 5.8e-15 84.7 57 68.4
unitig_52.g16865 Utricularia gibba HOM05D003018 ORTHO05D003402 5.8e-15 84.7 49 79.6
CDE02G1662 Ceratophyllum demersum HOM05D003018 ORTHO05D003402 7.6e-15 84.3 63 63.5
Ciclev10021773m.g Citrus clementina HOM05D003018 ORTHO05D003402 7.6e-15 84.3 56 73.2
Gohir.A09G187100 Gossypium hirsutum HOM05D003018 ORTHO05D003402 7.6e-15 84.3 50 82.0
Gorai.006G203900 Gossypium raimondii HOM05D003018 ORTHO05D003402 7.6e-15 84.3 50 82.0
Lj3C891T18 Lonicera japonica HOM05D003018 ORTHO05D003402 7.6e-15 84.3 50 78.0
THA.LOC104798993 Tarenaya hassleriana HOM05D003018 ORTHO05D003402 7.6e-15 84.3 56 75.0
Zm00001eb242440 Zea mays HOM05D003018 ORTHO05D003402 7.6e-15 84.3 50 78.0
Lj1g0024936 Lotus japonicus HOM05D003018 ORTHO05D003402 9.9e-15 84.0 65 66.2
vmacro06209 Vaccinium macrocarpon HOM05D003018 ORTHO05D003502 9.9e-15 84.0 56 69.6
EL10Ac3g05130 Beta vulgaris HOM05D003018 ORTHO05D003402 1.3e-14 83.6 57 70.2
BcaNung01249 Brassica carinata HOM05D003018 ORTHO05D003402 1.3e-14 83.6 64 67.2
BcaNung02005 Brassica carinata HOM05D003018 ORTHO05D003402 1.3e-14 83.6 64 67.2
A06p35470 Brassica napus HOM05D003018 ORTHO05D003402 1.3e-14 83.6 64 67.2
C07p43070 Brassica napus HOM05D003018 ORTHO05D003402 1.3e-14 83.6 64 67.2
BolC7t44834H Brassica oleracea HOM05D003018 ORTHO05D003402 1.3e-14 83.6 64 67.2
BraA06t26470Z Brassica rapa HOM05D003018 ORTHO05D003402 1.3e-14 83.6 64 67.2
Sp2g22740 Schrenkiella parvula HOM05D003018 ORTHO05D003402 1.3e-14 83.6 64 67.2
Ca_16839_v3 Cicer arietinum L. HOM05D003018 ORTHO05D003402 1.7e-14 83.2 65 64.6
Phvul.009G040400 Phaseolus vulgaris HOM05D003018 ORTHO05D003402 1.7e-14 83.2 50 80.0
VMungo1309G0595 Vigna mungo HOM05D003018 ORTHO05D003402 1.7e-14 83.2 50 80.0
C08p05060 Brassica napus HOM05D003018 ORTHO05D003402 2.2e-14 82.8 56 71.4
FAN03G3459 Fragaria x ananassa HOM05D003018 ORTHO05D003402 2.2e-14 82.8 57 66.7
FAN10G1538 Fragaria x ananassa HOM05D003018 ORTHO05D003402 2.2e-14 82.8 50 74.0
THA.LOC104814958 Tarenaya hassleriana HOM05D003018 ORTHO05D003402 2.2e-14 82.8 64 68.8
unitig_62.g23859 Utricularia gibba HOM05D003018 ORTHO05D003402 2.2e-14 82.8 56 69.6
Aa31LG11G3900 Aethionema arabicum HOM05D003018 ORTHO05D003402 2.9e-14 82.4 50 78.0
AL5G29400 Arabidopsis lyrata HOM05D003018 ORTHO05D003402 2.9e-14 82.4 56 67.9
AT3G49560 Arabidopsis thaliana HOM05D003018 ORTHO05D003402 2.9e-14 82.4 56 67.9
CiPaw.05G209100 Carya illinoinensis HOM05D003018 ORTHO05D003402 2.9e-14 82.4 50 76.0
FvH4_7g33330 Fragaria vesca HOM05D003018 ORTHO05D003402 2.9e-14 82.4 50 76.0
FAN10G3922 Fragaria x ananassa HOM05D003018 ORTHO05D003402 2.9e-14 82.4 50 74.0
Hma1.2p1_0115F.1_g055830 Hydrangea macrophylla HOM05D003018 ORTHO05D003402 2.9e-14 82.4 50 78.0
Lalb_Chr11g0067561 Lupinus albus HOM05D003018 ORTHO05D003402 3.8e-14 82.0 49 79.6
Lalb_Chr23g0272051 Lupinus albus HOM05D003018 ORTHO05D003402 3.8e-14 82.0 64 65.6
unitig_64.g29776 Utricularia gibba HOM05D000525 ORTHO05D001368 3.8e-14 82.0 49 75.5
Carub.0006s2250 Capsella rubella HOM05D003018 ORTHO05D003402 6.4e-14 81.3 56 69.6
Pp3c25_7060 Physcomitrium patens HOM05D003018 ORTHO05D003402 6.4e-14 81.3 50 76.0
FAN01G2324 Fragaria x ananassa HOM05D003018 ORTHO05D003402 8.4e-14 80.9 50 74.0
PSO832G1145 Papaver somniferum HOM05D003018 ORTHO05D003402 1.1e-13 80.5 77 55.8
Pp3c16_18310 Physcomitrium patens HOM05D025156 ORTHO05D003402 1.1e-13 80.5 81 55.6
QL09p005993 Quercus lobata HOM05D003018 ORTHO05D003402 1.4e-13 80.1 76 59.2
SMO356G0102 Selaginella moellendorffii HOM05D003018 ORTHO05D003402 1.4e-13 80.1 49 77.6
Pp3c16_18078 Physcomitrium patens HOM05D003018 ORTHO05D003402 1.9e-13 79.7 61 67.2
Pp3c16_18085 Physcomitrium patens HOM05D003018 ORTHO05D003402 1.9e-13 79.7 61 67.2
PGSC0003DMG400000572 Solanum tuberosum HOM05D003018 ORTHO05D003402 3.2e-13 79.0 59 67.8
Migut.F00968 Erythranthe guttata HOM05D003018 ORTHO05D003402 5.5e-13 78.2 49 75.5
PSO339G1784 Papaver somniferum HOM05D003018 ORTHO05D003402 7.1e-13 77.8 57 66.7
PSO017G0083 Papaver somniferum HOM05D003018 ORTHO05D003402 9.3e-13 77.4 60 66.7
PSO729G0102 Papaver somniferum HOM05D003018 ORTHO05D003402 9.3e-13 77.4 60 66.7
PSO729G0279 Papaver somniferum HOM05D003018 ORTHO05D003402 9.3e-13 77.4 60 66.7
vmacro06475 Vaccinium macrocarpon HOM05D003018 ORTHO05D003402 1.2e-12 77.0 84 53.6
BcaC06g31152 Brassica carinata HOM05D003018 ORTHO05D003402 1.6e-12 76.6 50 70.0
C07p34140 Brassica napus HOM05D003018 ORTHO05D003402 1.6e-12 76.6 50 70.0
BolC7t43927H Brassica oleracea HOM05D003018 ORTHO05D003402 1.6e-12 76.6 50 70.0
BolC7t43940H Brassica oleracea HOM05D003018 ORTHO05D003402 1.6e-12 76.6 50 70.0
CAN.G303.60 Capsicum annuum HOM05D003018 ORTHO05D003402 1.6e-12 76.6 56 66.1
Peaxi162Scf01026g00260 Petunia axillaris HOM05D003018 ORTHO05D003402 3.5e-12 75.5 68 60.3
Zm00001eb084410 Zea mays HOM05D003018 ORTHO05D003402 4.6e-12 75.1 50 74.0
MCO01G667 Micromonas commoda HOM05D003018 ORTHO05D003402 6.0e-12 74.7 70 52.9
BcaC06g31155 Brassica carinata HOM05D003018 ORTHO05D003402 1.8e-11 73.2 50 68.0
BolC7t43925H Brassica oleracea HOM05D003018 ORTHO05D003402 1.8e-11 73.2 50 68.0
Lsat_1_v5_gn_2_3400 Lactuca sativa HOM05D003018 ORTHO05D003402 1.8e-11 73.2 62 61.3
Haze_00335 Corylus avellana HOM05D003018 ORTHO05D003402 2.3e-11 72.8 63 60.3
A06p42880 Brassica napus HOM05D003018 ORTHO05D003402 3.0e-11 72.4 50 66.0
BraA06t27200Z Brassica rapa HOM05D003018 ORTHO05D003402 3.0e-11 72.4 50 66.0
Nn7g35801 Nelumbo nucifera HOM05D003018 ORTHO05D003402 8.7e-11 70.9 50 70.0
Sc19g0000360 Simmondsia chinensis HOM05D003018 ORTHO05D003402 8.7e-11 70.9 57 57.9
BcaC06g31150 Brassica carinata HOM05D003018 ORTHO05D003402 1.9e-10 69.7 50 66.0
C07p34160 Brassica napus HOM05D003018 ORTHO05D003402 1.9e-10 69.7 50 66.0
BolC7t43931H Brassica oleracea HOM05D003018 ORTHO05D003402 1.9e-10 69.7 50 66.0
BcaC06g31154 Brassica carinata HOM05D003018 ORTHO05D032594 2.5e-10 69.3 50 66.0
C07p34120 Brassica napus HOM05D003018 ORTHO05D032594 2.5e-10 69.3 50 66.0
BolC7t43926H Brassica oleracea HOM05D003018 ORTHO05D032594 2.5e-10 69.3 50 66.0
A06p42910 Brassica napus HOM05D003018 ORTHO05D003402 7.4e-10 67.8 50 64.0
PRCOL_00000888 Prasinoderma coloniale HOM05D003018 ORTHO05D003402 1.4e-08 63.5 49 61.2
CBR_g46197 Chara braunii HOM05D051350 ORTHO05D132924 1.8e-08 63.2 68 73.5
Cre03.g183100 Chlamydomonas reinhardtii HOM05D003018 ORTHO05D003402 1.8e-08 63.2 46 69.6
BcaB08g34602 Brassica carinata HOM05D003018 ORTHO05D003402 3.1e-08 62.4 50 58.0
Nitab4.5_0000021g0210 Nicotiana tabacum HOM05D003018 ORTHO05D003402 9.0e-08 60.8 65 52.3
CBR_g46199 Chara braunii HOM05D051350 ORTHO05D003402 2.0e-07 59.7 68 70.6
C07p34110 Brassica napus HOM05D003018 ORTHO05D003402 3.4e-07 58.9 76 44.7
Cc02_g00590 Coffea canephora HOM05D003018 ORTHO05D003402 3.4e-07 58.9 60 55.0
Lsat_1_v5_gn_0_9661 Lactuca sativa HOM05D003018 ORTHO05D003402 3.4e-07 58.9 56 55.4
PSO339G5858 Papaver somniferum HOM05D003018 ORTHO05D003402 5.8e-07 58.2 65 47.7
PSO675G9013 Papaver somniferum HOM05D003018 ORTHO05D003402 7.6e-07 57.8 53 50.9
PSO339G1829 Papaver somniferum HOM05D003018 ORTHO05D003402 1.7e-06 56.6 49 57.1
Rhsim03G0218500 Rhododendron simsii HOM05D003018 ORTHO05D003402 2.9e-06 55.8 50 56.0
Ah.13g071050 Amaranthus hybridus HOM05D003018 ORTHO05D003402 6.5e-06 54.7 57 50.9


User provided reference genes

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