Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g46859 Chara braunii HOM05D003502 ORTHO05D004250 4.7e-277 957.6 595 100.0
Mapoly0102s0001 Marchantia polymorpha HOM05D003502 ORTHO05D004250 6.8e-34 149.8 499 31.1
Pp3c6_25960 Physcomitrium patens HOM05D003502 ORTHO05D004250 7.3e-28 129.8 397 28.7
AagrBONN_evm.TU.Sc2ySwM_344.1826 Anthoceros agrestis HOM05D003502 ORTHO05D004250 5.2e-26 123.6 418 26.8
SEGI_11487 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 1.6e-22 112.1 410 24.9
SEGI_34091 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 1.6e-22 112.1 410 24.9
Pp3c5_3010 Physcomitrium patens HOM05D003502 ORTHO05D004250 1.1e-20 105.9 133 41.4
Zm00001eb141360 Zea mays HOM05D003502 ORTHO05D004250 3.6e-19 100.9 399 25.1
CARHR040300 Cardamine hirsuta HOM05D003502 ORTHO05D004250 1.1e-18 99.4 132 37.1
ECA246G0536 Erigeron canadensis HOM05D003502 ORTHO05D004250 1.1e-18 99.4 132 36.4
Os12g0433500 Oryza sativa ssp. japonica HOM05D003502 ORTHO05D004250 1.1e-18 99.4 400 25.2
Lsat_1_v5_gn_6_108521 Lactuca sativa HOM05D003502 ORTHO05D004250 2.3e-18 98.2 391 24.0
Carub.0001s3934 Capsella rubella HOM05D003502 ORTHO05D004250 3.1e-18 97.8 132 37.1
AL1G57830 Arabidopsis lyrata HOM05D003502 ORTHO05D004250 5.2e-18 97.1 132 36.4
BolC5t32137H Brassica oleracea HOM05D003502 ORTHO05D004250 5.2e-18 97.1 132 36.4
AT1G50240 Arabidopsis thaliana HOM05D003502 ORTHO05D004250 8.9e-18 96.3 132 37.1
Thecc.10G089300 Theobroma cacao HOM05D003502 ORTHO05D004250 1.2e-17 95.9 398 25.1
Aa31LG10G3970 Aethionema arabicum HOM05D003502 ORTHO05D004250 2.0e-17 95.1 132 37.1
Phvul.007G241300 Phaseolus vulgaris HOM05D003502 ORTHO05D004250 2.6e-17 94.7 396 24.5
Sp1g37070 Schrenkiella parvula HOM05D003502 ORTHO05D004250 4.4e-17 94.0 130 36.2
Rhsim03G0220800 Rhododendron simsii HOM05D003502 ORTHO05D004250 5.8e-17 93.6 411 24.1
BcaC01g01220 Brassica carinata HOM05D003502 ORTHO05D004250 1.3e-16 92.4 129 36.4
PSO384G3919 Papaver somniferum HOM05D003502 ORTHO05D004250 1.3e-16 92.4 132 34.1
MSTRG.336 Avicennia marina HOM05D003502 ORTHO05D004250 1.7e-16 92.0 136 33.8
A08p03270 Brassica napus HOM05D003502 ORTHO05D004250 1.7e-16 92.0 129 35.7
C03p89540 Brassica napus HOM05D003502 ORTHO05D004250 1.7e-16 92.0 129 35.7
C05p34020 Brassica napus HOM05D003502 ORTHO05D004250 1.7e-16 92.0 120 37.5
BolC3t21268H Brassica oleracea HOM05D003502 ORTHO05D004250 1.7e-16 92.0 129 35.7
BraA08t32360Z Brassica rapa HOM05D003502 ORTHO05D004250 1.7e-16 92.0 129 35.7
BcaB04g17262 Brassica carinata HOM05D003502 ORTHO05D004250 2.2e-16 91.7 129 35.7
Lj3C889G13 Lonicera japonica HOM05D003502 ORTHO05D004250 2.2e-16 91.7 132 34.8
PSO339G0895 Papaver somniferum HOM05D003502 ORTHO05D004250 2.2e-16 91.7 132 34.1
PSO419G0001 Papaver somniferum HOM05D003502 ORTHO05D004250 2.2e-16 91.7 132 34.1
Cc02_g00380 Coffea canephora HOM05D003502 ORTHO05D004250 2.9e-16 91.3 129 35.7
FvH4_7g33760 Fragaria vesca HOM05D003502 ORTHO05D004250 2.9e-16 91.3 132 36.4
FAN03G0354 Fragaria x ananassa HOM05D003502 ORTHO05D004250 2.9e-16 91.3 132 36.4
FAN03G1761 Fragaria x ananassa HOM05D003502 ORTHO05D004250 2.9e-16 91.3 132 36.4
HanXRQChr05g0148851 Helianthus annuus HOM05D003502 ORTHO05D004250 2.9e-16 91.3 318 25.5
GSVIVG01024439001 Vitis vinifera HOM05D003502 ORTHO05D004250 2.9e-16 91.3 132 36.4
RcHm_v2.0_Chr1g0383891 Rosa chinensis HOM05D003502 ORTHO05D004250 3.7e-16 90.9 132 35.6
Sabra19G0056000 Salix brachista HOM05D003502 ORTHO05D004250 3.7e-16 90.9 132 33.3
MELO3C005424.2 Cucumis melo HOM05D003502 ORTHO05D004250 4.9e-16 90.5 132 34.8
Thhalv10011182m.g Eutrema salsugineum HOM05D003502 ORTHO05D004250 4.9e-16 90.5 129 35.7
ClCG01G005070 Citrullus lanatus HOM05D003502 ORTHO05D004250 6.4e-16 90.1 132 34.8
Glyma.20G069700 Glycine max HOM05D003502 ORTHO05D004250 8.3e-16 89.7 132 36.4
Lalb_Chr01g0010621 Lupinus albus HOM05D003502 ORTHO05D004250 8.3e-16 89.7 132 36.4
SalBow6G5501 Salvia bowleyana HOM05D003502 ORTHO05D004250 8.3e-16 89.7 132 34.1
THA.LOC104811354 Tarenaya hassleriana HOM05D003502 ORTHO05D004250 8.3e-16 89.7 129 35.7
Ca_25960_v3 Cicer arietinum L. HOM05D003502 ORTHO05D004250 1.1e-15 89.4 131 38.2
CsaV3_5G005350 Cucumis sativus L. HOM05D003502 ORTHO05D004250 1.1e-15 89.4 132 34.8
FAN10G2252 Fragaria x ananassa HOM05D000067 ORTHO05D004250 1.1e-15 89.4 132 35.6
FAN10G2333 Fragaria x ananassa HOM05D003502 ORTHO05D004250 1.1e-15 89.4 132 35.6
Glyma.10G118100 Glycine max HOM05D003502 ORTHO05D004250 1.1e-15 89.4 393 24.4
TPR.G19134 Trifolium pratense HOM05D003502 ORTHO05D004250 1.1e-15 89.4 132 37.9
CANSAT21G0253 Cannabis sativa HOM05D003502 ORTHO05D004250 1.9e-15 88.6 232 41.4
CANSAT56G1789 Cannabis sativa HOM05D003502 ORTHO05D004250 2.4e-15 88.2 230 25.7
FAN01G2009 Fragaria x ananassa HOM05D000067 ORTHO05D004250 2.4e-15 88.2 132 35.6
MD07G1306200 Malus domestica HOM05D003502 ORTHO05D004250 2.4e-15 88.2 132 34.8
vmacro06503 Vaccinium macrocarpon HOM05D003502 ORTHO05D004250 2.4e-15 88.2 132 34.8
COL.COLO4_32890 Corchorus olitorius HOM05D003502 ORTHO05D004250 3.2e-15 87.8 132 34.8
Duzib114G0543 Durio zibethinus HOM05D003502 ORTHO05D004250 4.1e-15 87.4 132 34.8
Lj6g0010845 Lotus japonicus HOM05D003502 ORTHO05D004250 4.1e-15 87.4 132 36.4
Potri.019G052500 Populus trichocarpa HOM05D003502 ORTHO05D004250 4.1e-15 87.4 132 32.6
TWI60G0235 Tripterygium wilfordii HOM05D003502 ORTHO05D004250 4.1e-15 87.4 132 33.3
Ciclev10000035m.g Citrus clementina HOM05D003502 ORTHO05D004250 5.4e-15 87.0 397 23.4
Manes.08G163900 Manihot esculenta HOM05D003502 ORTHO05D004250 5.4e-15 87.0 130 36.2
Migut.F01860 Erythranthe guttata HOM05D003502 ORTHO05D004250 7.1e-15 86.7 132 34.1
Sed0005246 Sechium edule HOM05D003502 ORTHO05D004250 7.1e-15 86.7 132 35.6
PGR042G1531 Punica granatum HOM05D003502 ORTHO05D004250 9.2e-15 86.3 397 23.9
Prupe.2G324200 Prunus persica HOM05D003502 ORTHO05D004250 1.2e-14 85.9 132 34.1
VMungo0720G2129 Vigna mungo HOM05D003502 ORTHO05D004250 1.2e-14 85.9 391 24.0
Psat6g094880 Pisum sativum HOM05D003502 ORTHO05D004250 1.6e-14 85.5 131 35.9
CiPaw.01G206800 Carya illinoinensis HOM05D003502 ORTHO05D004250 3.5e-14 84.3 131 35.1
Sed0020646 Sechium edule HOM05D003502 ORTHO05D004250 3.5e-14 84.3 132 33.3
MD01G1234000 Malus domestica HOM05D003502 ORTHO05D004250 4.6e-14 84.0 132 32.6
Atru.chr8.760 Acer truncatum HOM05D003502 ORTHO05D004250 6.0e-14 83.6 132 34.1
arahy.Tifrunner.gnm1.ann1.KF4QTS Arachis hypogaea HOM05D003502 ORTHO05D004250 6.0e-14 83.6 401 24.2
HPP92_008318 Vanilla planifolia HOM05D003502 ORTHO05D004250 6.0e-14 83.6 394 23.9
QL06p046981 Quercus lobata HOM05D003502 ORTHO05D004250 7.8e-14 83.2 131 34.4
SGA_v2.0_scaffold283G47001 Striga asiatica HOM05D003502 ORTHO05D004250 7.8e-14 83.2 129 34.1
Actinidia38803 Actinidia chinensis HOM05D003502 ORTHO05D004250 1.3e-13 82.4 129 32.6
BcaC05g27448 Brassica carinata HOM05D003502 ORTHO05D004250 1.3e-13 82.4 123 35.0
CSS0027375 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 1.3e-13 82.4 129 31.8
CSS0032069 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 1.3e-13 82.4 129 31.8
AUR62006100 Chenopodium quinoa HOM05D003502 ORTHO05D004250 1.3e-13 82.4 396 21.2
Dinv29168 Davidia involucrata HOM05D003502 ORTHO05D004250 1.3e-13 82.4 129 31.8
Prupe.3G137600 Prunus persica HOM05D003502 ORTHO05D004250 1.3e-13 82.4 133 33.8
Cfa013318 Carpinus fangiana HOM05D003502 ORTHO05D004250 1.7e-13 82.0 129 34.1
Hund20998 Selenicereus undatus HOM05D003502 ORTHO05D004250 1.7e-13 82.0 132 33.3
ATR0561G216 Amborella trichopoda HOM05D003502 ORTHO05D004250 2.3e-13 81.6 131 30.5
Gohir.D04G006300 Gossypium hirsutum HOM05D003502 ORTHO05D004250 2.3e-13 81.6 132 35.6
Nitab4.5_0005081g0060 Nicotiana tabacum HOM05D003502 ORTHO05D004250 2.3e-13 81.6 132 31.8
Ah.07g205720 Amaranthus hybridus HOM05D003502 ORTHO05D004250 3.0e-13 81.3 393 20.9
Gohir.A05G409100 Gossypium hirsutum HOM05D003502 ORTHO05D004250 3.0e-13 81.3 132 35.6
Gorai.012G007900 Gossypium raimondii HOM05D003502 ORTHO05D004250 3.0e-13 81.3 132 35.6
Nitab4.5_0000021g0390 Nicotiana tabacum HOM05D003502 ORTHO05D004250 3.9e-13 80.9 131 32.1
Sopen03g027640 Solanum pennellii HOM05D003502 ORTHO05D004250 3.9e-13 80.9 132 31.8
arahy.Tifrunner.gnm1.ann1.FUJ27D Arachis hypogaea HOM05D003502 ORTHO05D004250 5.1e-13 80.5 162 32.7
Aqoxy7G00566 Aquilegia oxysepala HOM05D003502 ORTHO05D004250 8.6e-13 79.7 132 31.1
DCAR_014574 Daucus carota HOM05D003502 ORTHO05D004250 8.6e-13 79.7 422 21.6
Medtr1g048630 Medicago truncatula HOM05D003502 ORTHO05D004250 8.6e-13 79.7 131 34.4
Nn1g07854 Nelumbo nucifera HOM05D003502 ORTHO05D004250 1.9e-12 78.6 129 31.0
Cpa.g.c44189 Carica papaya HOM05D003502 ORTHO05D004250 2.5e-12 78.2 85 43.5
COL.COLO4_28859 Corchorus olitorius HOM05D003502 ORTHO05D004250 4.3e-12 77.4 132 35.6
MBI04_g06222_MAGBIO Magnolia biondii HOM05D003502 ORTHO05D004250 5.6e-12 77.0 407 23.3
Oeu010168.1 Olea europaea HOM05D003502 ORTHO05D004250 5.6e-12 77.0 173 30.1
CAN.G303.73 Capsicum annuum HOM05D003502 ORTHO05D004250 7.3e-12 76.6 130 31.5
Haze_16219 Corylus avellana HOM05D003502 ORTHO05D004250 7.3e-12 76.6 128 32.8
AUR62019393 Chenopodium quinoa HOM05D003502 ORTHO05D004250 9.5e-12 76.3 396 21.7
SHI02505 Sapria himalayana HOM05D003502 ORTHO05D004250 1.6e-11 75.5 131 31.3
PRCOL_00004072 Prasinoderma coloniale HOM05D003502 ORTHO05D004250 3.1e-10 71.2 78 46.2
EL10Ac3g05293 Beta vulgaris HOM05D003502 ORTHO05D004250 4.0e-10 70.9 132 31.1
Eucgr.A02961 Eucalyptus grandis HOM05D003502 ORTHO05D004250 4.0e-10 70.9 128 29.7
HPP92_008321 Vanilla planifolia HOM05D003502 ORTHO05D004250 4.0e-10 70.9 85 38.8
Sc06g0007830 Simmondsia chinensis HOM05D003502 ORTHO05D004250 2.6e-09 68.2 175 28.0
TAR624G1438 Trochodendron aralioides HOM05D003502 ORTHO05D004250 2.2e-08 65.1 104 33.7
HanXRQChr05g0148841 Helianthus annuus HOM05D003502 ORTHO05D004250 2.9e-08 64.7 78 38.5
Lj2g0016050 Lotus japonicus HOM05D003502 ORTHO05D004250 1.9e-07 62.0 117 30.8
AUR62029697 Chenopodium quinoa HOM05D003502 ORTHO05D004250 2.7e-06 58.2 176 26.7
HanXRQChr16g0510941 Helianthus annuus HOM05D003502 ORTHO05D004250 2.7e-06 58.2 107 29.0


User provided reference genes

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