Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 0.0e+00 1369.8 712 100.0
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 1.6e-140 504.2 672 46.4
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 1.6e-132 477.6 613 48.9
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 2.1e-132 477.2 818 38.8
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 9.2e-128 461.8 613 48.1
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 7.8e-127 458.8 784 39.0
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 1.5e-122 444.5 608 44.7
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 1.3e-121 441.4 648 42.4
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 2.2e-121 440.7 607 47.3
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 6.4e-121 439.1 656 43.4
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.1e-120 438.3 650 42.5
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 7.1e-120 435.6 645 43.6
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 1.2e-119 434.9 802 36.2
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 2.7e-119 433.7 661 43.0
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 2.7e-119 433.7 761 38.0
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 3.5e-119 433.3 653 43.0
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 4.6e-119 433.0 656 43.0
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 4.6e-119 433.0 645 43.1
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 4.6e-119 433.0 610 44.1
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 1.3e-118 431.4 619 46.5
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 1.3e-118 431.4 651 42.7
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 2.3e-118 430.6 612 47.1
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 3.0e-118 430.3 643 44.0
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 5.1e-118 429.5 642 43.8
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 6.6e-118 429.1 616 44.0
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 6.6e-118 429.1 616 44.0
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 8.7e-118 428.7 624 46.2
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 4.3e-117 426.4 646 41.6
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 7.3e-117 425.6 665 42.9
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 1.3e-116 424.9 618 41.9
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 1.6e-116 424.5 655 43.2
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 2.1e-116 424.1 611 43.9
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 3.6e-116 423.3 611 44.8
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 4.8e-116 422.9 647 42.5
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 8.1e-116 422.2 654 42.4
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 8.1e-116 422.2 618 41.6
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 1.4e-115 421.4 611 44.8
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 1.4e-115 421.4 647 42.7
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 1.8e-115 421.0 699 38.6
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 1.8e-115 421.0 652 42.2
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 1.2e-114 418.3 675 41.3
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 2.0e-114 417.5 713 38.7
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 2.0e-114 417.5 650 41.8
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 2.0e-114 417.5 653 42.4
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 3.4e-114 416.8 640 43.1
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 3.4e-114 416.8 659 41.3
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 5.8e-114 416.0 654 42.8
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 7.6e-114 415.6 651 41.9
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 1.3e-113 414.8 592 43.2
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.3e-113 414.8 651 42.1
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.7e-113 414.5 648 41.0
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 3.8e-113 413.3 651 40.6
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 4.9e-113 412.9 651 41.8
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 4.9e-113 412.9 645 41.2
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 1.9e-112 411.0 651 42.4
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 1.9e-112 411.0 647 41.3
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.9e-112 411.0 651 41.6
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 1.9e-112 411.0 650 41.2
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 2.4e-112 410.6 622 43.6
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.4e-112 410.6 614 46.3
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 4.2e-112 409.8 653 41.5
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 5.4e-112 409.5 662 42.0
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 7.1e-112 409.1 705 40.4
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 9.3e-112 408.7 621 42.5
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 1.2e-111 408.3 606 43.4
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 1.6e-111 407.9 607 43.2
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 1.6e-111 407.9 647 40.2
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 1.6e-111 407.9 615 43.7
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 1.6e-111 407.9 654 39.8
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.1e-111 407.5 614 45.9
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 2.7e-111 407.1 650 41.8
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.7e-111 407.1 618 43.4
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 4.6e-111 406.4 646 42.7
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 4.6e-111 406.4 606 43.7
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 4.6e-111 406.4 615 46.0
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 6.0e-111 406.0 649 40.5
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 1.0e-110 405.2 606 44.2
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 1.0e-110 405.2 626 41.2
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-110 404.8 615 45.9
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 3.0e-110 403.7 642 41.6
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 3.9e-110 403.3 657 41.7
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 3.9e-110 403.3 603 44.4
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 3.9e-110 403.3 565 44.2
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 5.1e-110 402.9 604 44.4
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 6.7e-110 402.5 646 42.1
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 1.1e-109 401.7 648 43.1
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 2.5e-109 400.6 609 42.7
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 3.3e-109 400.2 607 44.5
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 1.3e-108 398.3 602 42.7
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.6e-108 397.9 628 40.0
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 2.1e-108 397.5 598 42.6
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 2.8e-108 397.1 635 40.3
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 6.2e-108 396.0 645 39.7
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 3.1e-107 393.7 606 43.2
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 3.4e-106 390.2 615 43.6
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 1.3e-105 388.3 571 46.1
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 2.9e-105 387.1 605 43.3
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 3.8e-105 386.7 603 43.3
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 1.9e-104 384.4 635 41.9
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.9e-104 384.4 701 37.5
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 4.2e-104 383.3 604 43.4
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 4.2e-104 383.3 437 50.3
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 7.1e-104 382.5 631 39.5
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 6.0e-103 379.4 630 40.5
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 3.0e-102 377.1 463 47.5
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 6.7e-102 375.9 594 41.4
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 5.3e-99 366.3 580 44.0
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 4.9e-97 359.8 710 35.4
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 7.9e-95 352.4 600 39.8
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 1.9e-93 347.8 723 37.6
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 1.5e-90 338.2 685 36.2
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 6.7e-86 322.8 694 36.2
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 8.8e-86 322.4 564 39.5
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 1.1e-85 322.0 604 37.3
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 2.0e-85 321.2 452 42.7
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 2.0e-85 321.2 641 36.3
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 7.4e-85 319.3 557 39.9
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.6e-79 301.6 396 45.5
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 2.7e-58 231.1 394 38.1
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.1e-56 225.7 229 53.7
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 3.0e-54 217.6 402 37.1
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 2.6e-53 214.5 429 36.1
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 1.2e-50 205.7 238 47.5
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 7.7e-50 203.0 154 64.9
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 3.8e-49 200.7 713 28.2
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 1.9e-48 198.4 362 37.3
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 5.5e-48 196.8 271 46.5
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 3.6e-47 194.1 377 37.1
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 5.2e-46 190.3 352 37.5
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.7e-45 186.8 145 63.4
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.2e-37 162.5 340 35.6
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 7.5e-37 159.8 604 29.5
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.9e-36 157.1 168 50.0
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-31 142.1 98 69.4
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 1.4e-30 139.0 146 55.5
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 2.4e-27 128.3 176 42.6
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.2e-27 127.9 220 36.8
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.1e-27 127.5 83 73.5
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 2.7e-26 124.8 216 37.0
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.8e-26 123.2 217 38.2
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.9e-25 120.9 82 69.5
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.1e-25 120.6 90 63.3
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.3e-24 117.5 74 71.6
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-23 115.9 83 67.5
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.9e-22 109.8 65 72.3
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.9e-20 104.0 60 78.3
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 8.3e-20 103.2 69 68.1
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-19 102.1 60 76.7
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 2.1e-18 98.6 68 67.6
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.2e-14 84.0 83 53.0
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 6.8e-14 83.6 150 39.3
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 2.9e-12 78.2 50 74.0
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 3.8e-12 77.8 87 50.6
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 8.4e-12 76.6 74 52.7
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 1.6e-07 62.4 93 36.6
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 5.3e-06 57.4 131 34.4
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 6.9e-06 57.0 94 42.6


User provided reference genes

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