Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 0.0e+00 1352.8 677 100.0
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 3.0e-83 313.9 288 52.4
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 1.8e-80 304.7 305 49.5
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 9.2e-77 292.4 291 49.5
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 1.2e-73 282.0 293 46.1
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 6.8e-72 276.2 298 44.6
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 5.8e-71 273.1 293 45.1
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 7.6e-71 272.7 288 44.1
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 7.6e-71 272.7 288 45.8
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 7.6e-71 272.7 297 45.5
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 3.8e-70 270.4 304 44.1
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 3.8e-70 270.4 304 44.1
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 4.9e-70 270.0 289 44.3
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 6.4e-70 269.6 314 42.4
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 8.4e-70 269.2 298 44.6
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 8.4e-70 269.2 291 44.7
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 8.4e-70 269.2 289 45.3
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 8.4e-70 269.2 299 43.8
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 1.1e-69 268.9 291 45.7
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 1.1e-69 268.9 305 43.0
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 2.4e-69 267.7 314 42.0
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 2.4e-69 267.7 293 44.0
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 4.2e-69 266.9 296 43.6
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 7.1e-69 266.2 295 44.1
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 1.6e-68 265.0 292 43.5
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 1.6e-68 265.0 293 44.0
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 2.1e-68 264.6 288 43.8
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 2.7e-68 264.2 314 41.7
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 2.7e-68 264.2 288 45.1
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 3.5e-68 263.8 310 43.5
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 4.6e-68 263.5 293 43.0
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 6.0e-68 263.1 312 42.9
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 7.8e-68 262.7 295 43.7
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.0e-67 262.3 292 42.5
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 1.3e-67 261.9 291 43.6
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 1.7e-67 261.5 306 42.2
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 1.7e-67 261.5 306 42.2
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 1.7e-67 261.5 292 45.2
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 1.7e-67 261.5 283 43.1
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 3.0e-67 260.8 288 43.1
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 3.9e-67 260.4 312 41.7
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 3.9e-67 260.4 312 42.0
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 3.9e-67 260.4 288 44.1
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 5.1e-67 260.0 308 41.9
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 6.6e-67 259.6 289 42.9
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 6.6e-67 259.6 289 42.9
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 8.7e-67 259.2 289 43.6
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 8.7e-67 259.2 292 42.5
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 8.7e-67 259.2 304 41.4
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 1.1e-66 258.8 295 43.4
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 1.5e-66 258.5 288 44.4
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 1.5e-66 258.5 289 42.6
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 1.5e-66 258.5 289 43.3
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 1.9e-66 258.1 292 44.9
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 2.5e-66 257.7 289 43.6
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 2.5e-66 257.7 289 42.9
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 2.5e-66 257.7 311 40.5
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 2.5e-66 257.7 292 43.8
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 2.5e-66 257.7 289 42.6
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 3.3e-66 257.3 292 41.4
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 3.3e-66 257.3 289 42.6
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 5.6e-66 256.5 289 42.9
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 5.6e-66 256.5 304 40.5
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 5.6e-66 256.5 289 43.6
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 5.6e-66 256.5 289 41.5
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 7.3e-66 256.1 306 41.2
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 9.6e-66 255.8 292 41.8
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 9.6e-66 255.8 288 43.4
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 2.1e-65 254.6 288 41.3
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 2.1e-65 254.6 289 43.3
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 3.6e-65 253.8 289 42.6
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 6.2e-65 253.1 288 42.0
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 1.1e-64 252.3 274 44.9
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 1.4e-64 251.9 288 43.4
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 3.1e-64 250.8 301 41.5
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 4.0e-64 250.4 292 41.8
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 5.3e-64 250.0 276 42.4
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 6.9e-64 249.6 276 43.1
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 1.2e-63 248.8 289 42.2
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 1.2e-63 248.8 288 42.0
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 1.5e-63 248.4 283 42.0
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 2.6e-63 247.7 262 45.0
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 2.6e-63 247.7 301 40.5
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 2.6e-63 247.7 301 40.5
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 7.6e-63 246.1 288 41.7
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.3e-62 245.4 302 40.4
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.7e-62 245.0 282 42.6
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 2.2e-62 244.6 278 42.1
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 2.9e-62 244.2 285 40.0
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 4.9e-62 243.4 309 39.5
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 4.9e-62 243.4 288 40.3
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 8.4e-62 242.7 278 42.1
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 1.9e-61 241.5 289 40.5
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 4.2e-61 240.4 289 40.8
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 4.2e-61 240.4 282 41.8
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 9.3e-61 239.2 279 41.6
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 6.0e-60 236.5 293 43.7
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 7.8e-60 236.1 262 49.6
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 1.7e-59 235.0 283 39.2
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 3.0e-59 234.2 269 46.8
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 6.6e-59 233.0 292 40.4
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 1.5e-58 231.9 275 39.3
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 1.9e-58 231.5 292 39.7
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 2.5e-58 231.1 298 41.3
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 3.6e-57 227.3 301 37.5
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 1.5e-55 221.9 277 40.1
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 3.4e-55 220.7 227 43.6
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 2.9e-54 217.6 292 41.1
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 1.1e-53 215.7 243 43.2
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 1.1e-53 215.7 243 43.2
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 1.4e-53 215.3 218 46.3
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 3.2e-53 214.2 298 38.3
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 5.4e-53 213.4 273 38.8
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 7.1e-53 213.0 315 37.1
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 2.1e-52 211.5 275 38.2
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 6.0e-52 209.9 240 41.2
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 2.3e-51 208.0 299 38.5
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 5.1e-51 206.8 215 43.3
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 6.7e-51 206.5 224 41.1
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 1.1e-50 205.7 317 35.0
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 4.3e-50 203.8 219 42.5
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 8.1e-49 199.5 301 36.2
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 3.4e-47 194.1 233 42.9
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 1.3e-46 192.2 201 45.3
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 4.2e-45 187.2 221 41.6
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 7.1e-45 186.4 211 42.7
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 1.2e-44 185.7 198 44.4
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 3.7e-41 174.1 311 37.9
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 8.4e-38 162.9 169 45.6
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 6.7e-35 153.3 309 31.7
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 1.5e-34 152.1 192 39.1
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 4.3e-34 150.6 149 46.3
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.3e-33 149.1 145 44.1
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 2.7e-28 131.3 139 46.0
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 3.3e-26 124.4 223 37.2
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 7.4e-26 123.2 223 37.2
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 3.7e-25 120.9 102 52.9
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 2.4e-24 118.2 283 29.0
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 4.1e-24 117.5 299 30.4
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 5.9e-23 113.6 141 41.1
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 1.0e-19 102.8 158 37.3
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.2e-17 95.1 105 40.0
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 7.2e-13 80.1 88 46.6
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 5.0e-06 57.4 78 35.9
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 5.0e-06 57.4 61 42.6


User provided reference genes

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