Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 0.0e+00 1156.4 568 100.0
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 2.1e-284 981.9 494 97.6
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 1.8e-246 855.9 447 92.4
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 1.3e-145 520.8 462 55.6
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 2.8e-143 513.1 441 57.8
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 1.4e-142 510.8 442 58.1
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 1.3e-140 504.2 444 57.0
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 2.9e-140 503.1 457 55.8
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 1.3e-137 494.2 448 57.4
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 8.7e-137 491.5 448 56.7
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 2.8e-135 486.5 447 55.3
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 1.4e-134 484.2 443 55.3
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 3.1e-134 483.0 445 55.1
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 5.3e-134 482.3 454 54.8
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 3.4e-133 479.6 445 55.5
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 3.4e-133 479.6 444 55.2
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 5.8e-133 478.8 453 54.1
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.3e-132 477.6 483 52.6
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 2.2e-132 476.9 445 55.3
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 2.9e-132 476.5 444 54.7
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 2.9e-132 476.5 454 54.2
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 3.8e-132 476.1 445 55.1
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 6.4e-132 475.3 453 53.9
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 8.4e-132 474.9 444 54.5
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 1.9e-131 473.8 444 55.0
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 1.9e-131 473.8 442 55.0
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 2.5e-131 473.4 447 55.5
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 2.5e-131 473.4 444 54.5
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 3.2e-131 473.0 445 54.4
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 3.2e-131 473.0 460 54.8
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 4.2e-131 472.6 453 53.6
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 9.3e-131 471.5 445 54.6
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 9.3e-131 471.5 446 54.7
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 9.3e-131 471.5 465 54.2
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 9.3e-131 471.5 442 55.4
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 1.2e-130 471.1 455 53.4
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 2.1e-130 470.3 445 54.6
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 2.7e-130 469.9 443 55.5
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 2.7e-130 469.9 445 54.4
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 4.6e-130 469.2 456 53.7
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 6.0e-130 468.8 446 54.3
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 6.0e-130 468.8 446 54.3
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 6.0e-130 468.8 445 54.6
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 1.0e-129 468.0 445 54.4
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 1.0e-129 468.0 454 53.5
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 1.3e-129 467.6 446 54.9
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 1.8e-129 467.2 445 54.4
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 1.8e-129 467.2 443 54.4
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 3.0e-129 466.5 442 54.5
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 3.0e-129 466.5 444 54.5
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 3.0e-129 466.5 442 52.9
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.9e-129 466.1 450 54.4
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 5.1e-129 465.7 494 51.4
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 6.7e-129 465.3 444 54.3
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 6.7e-129 465.3 452 53.8
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 8.7e-129 464.9 458 53.5
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 8.7e-129 464.9 450 54.4
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 8.7e-129 464.9 442 54.1
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 1.1e-128 464.5 449 54.3
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 1.1e-128 464.5 441 55.3
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 1.1e-128 464.5 446 54.7
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 1.5e-128 464.2 445 54.2
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 1.9e-128 463.8 451 55.2
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 2.5e-128 463.4 445 53.0
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 3.3e-128 463.0 459 53.8
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 3.3e-128 463.0 446 53.4
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 5.6e-128 462.2 467 53.1
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 7.4e-128 461.8 455 53.8
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 9.6e-128 461.5 442 53.4
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 9.6e-128 461.5 445 52.6
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 9.6e-128 461.5 447 54.1
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 1.3e-127 461.1 445 53.7
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 1.3e-127 461.1 445 54.8
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 1.3e-127 461.1 445 54.8
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 1.6e-127 460.7 472 52.3
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 2.1e-127 460.3 445 53.0
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 4.8e-127 459.1 455 53.4
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 4.8e-127 459.1 447 53.9
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 6.2e-127 458.8 460 52.6
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 6.2e-127 458.8 450 54.0
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 6.2e-127 458.8 457 52.7
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 6.2e-127 458.8 441 54.0
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 1.1e-126 458.0 441 52.2
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 1.4e-126 457.6 445 53.9
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 1.8e-126 457.2 441 53.1
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 2.4e-126 456.8 441 53.1
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.1e-126 456.4 454 53.3
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 5.3e-126 455.7 472 51.7
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 1.2e-125 454.5 445 53.3
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 1.2e-125 454.5 472 51.7
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 1.5e-125 454.1 447 53.5
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 1.5e-125 454.1 456 53.3
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 1.5e-125 454.1 445 53.3
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 2.0e-125 453.8 443 52.8
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 2.6e-125 453.4 472 51.7
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 4.5e-125 452.6 445 52.1
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 4.5e-125 452.6 444 53.2
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 1.3e-124 451.1 444 52.5
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 4.9e-124 449.1 445 53.0
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 6.5e-124 448.7 447 52.1
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 8.4e-124 448.4 444 52.0
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 1.1e-123 448.0 461 51.6
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 3.2e-123 446.4 444 51.8
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 4.2e-123 446.0 447 52.1
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 5.5e-123 445.7 448 53.8
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 7.1e-123 445.3 463 49.9
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 7.1e-123 445.3 455 54.1
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 1.2e-122 444.5 442 51.8
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 3.9e-121 439.5 443 51.5
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 1.9e-120 437.2 447 50.8
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 4.3e-120 436.0 448 51.1
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 3.7e-119 433.0 433 52.2
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 8.2e-119 431.8 456 50.4
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 9.0e-118 428.3 444 51.4
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 4.5e-117 426.0 445 50.1
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 4.5e-117 426.0 420 51.4
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 5.9e-117 425.6 446 49.1
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 3.2e-115 419.9 440 50.2
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 7.2e-115 418.7 444 49.8
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 4.6e-114 416.0 442 52.0
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 2.3e-113 413.7 450 47.8
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 5.1e-113 412.5 448 49.6
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 7.4e-112 408.7 455 48.1
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 2.8e-111 406.8 479 45.1
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 3.7e-111 406.4 422 49.8
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 8.2e-111 405.2 443 47.6
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 7.7e-109 398.7 447 46.5
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 2.2e-108 397.1 457 47.5
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 2.1e-106 390.6 448 47.1
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 2.7e-106 390.2 395 51.6
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 6.1e-106 389.0 446 46.9
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 3.9e-105 386.3 393 51.4
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 1.3e-103 381.3 444 48.2
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 2.4e-102 377.1 405 49.4
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 5.3e-102 375.9 415 48.7
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 2.7e-98 363.6 394 48.7
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 8.8e-97 358.6 433 45.3
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 3.5e-93 346.7 291 59.5
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 1.4e-86 324.7 448 42.9
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 1.8e-86 324.3 384 43.5
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 1.3e-84 318.2 220 66.4
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 3.8e-84 316.6 441 43.5
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 4.2e-83 313.2 363 47.4
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 2.8e-79 300.4 364 46.7
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 4.1e-78 296.6 216 63.4
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 1.1e-75 288.5 394 40.4
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 3.3e-75 287.0 368 45.1
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 2.0e-69 267.7 396 41.9
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 5.9e-69 266.2 392 40.8
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 2.2e-63 247.7 399 40.6
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 2.9e-63 247.3 163 69.3
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 8.3e-63 245.7 390 39.0
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.4e-56 223.4 322 40.7
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.3e-52 211.8 202 50.5
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.3e-52 211.8 202 50.5
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.3e-51 206.8 196 51.0
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.3e-51 206.8 196 51.0
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.3e-51 206.8 196 51.0
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 8.9e-49 199.1 271 43.5
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 1.2e-48 198.7 268 43.7
GSVIVG01020837001 Vitis vinifera HOM05D003673 ORTHO05D004764 3.0e-36 157.5 103 68.9
Cc05_g01440 Coffea canephora HOM05D003673 ORTHO05D004764 1.9e-35 154.8 105 66.7
AUR62035117 Chenopodium quinoa HOM05D003673 ORTHO05D017143 2.1e-29 134.8 228 38.6
AUR62039294 Chenopodium quinoa HOM05D003673 ORTHO05D017143 2.1e-29 134.8 228 38.6
AUR62039298 Chenopodium quinoa HOM05D003673 ORTHO05D017143 2.1e-29 134.8 228 38.6
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 6.4e-23 113.2 88 56.8
Atru.chr6.2045 Acer truncatum HOM05D003673 ORTHO05D017143 4.2e-22 110.5 104 51.0
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 5.4e-22 110.2 88 55.7
Cfa023357 Carpinus fangiana HOM05D003673 ORTHO05D017143 1.3e-20 105.5 101 52.5
AUR62044532 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.3e-20 105.5 127 44.9
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 3.0e-20 104.4 162 41.4
MD05G1024200 Malus domestica HOM05D003673 ORTHO05D004764 3.0e-20 104.4 75 62.7
ATR0763G191 Amborella trichopoda HOM05D003673 ORTHO05D017143 9.6e-19 99.4 119 46.2
COL.COLO4_38401 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.8e-17 95.1 144 41.7
CARHR006190 Cardamine hirsuta HOM05D003673 ORTHO05D004764 3.4e-16 90.9 52 78.8
TPR.G10161 Trifolium pratense HOM05D003673 ORTHO05D004764 4.5e-16 90.5 52 76.9
GSVIVG01013079001 Vitis vinifera HOM05D003673 ORTHO05D004764 1.7e-15 88.6 65 60.0
Dinv42661 Davidia involucrata HOM05D002888 ORTHO05D003321 1.9e-14 85.1 139 35.3
COL.COLO4_20758 Corchorus olitorius HOM05D003673 ORTHO05D004764 3.0e-12 77.8 68 55.9
Lj8C8T3 Lonicera japonica HOM05D003673 ORTHO05D004764 1.3e-07 62.4 38 71.1
AUR62039302 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.7e-07 62.0 135 36.3


User provided reference genes

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