Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 2.3e-275 951.8 566 100.0
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 1.9e-123 447.2 581 59.0
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 3.1e-49 200.7 117 86.3
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 8.3e-47 192.6 117 82.1
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 9.2e-46 189.1 124 73.4
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 9.2e-46 189.1 117 78.6
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 9.2e-46 189.1 124 73.4
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 1.2e-45 188.7 124 73.4
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 2.0e-45 188.0 124 72.6
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 2.7e-45 187.6 171 57.9
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 6.0e-45 186.4 124 71.8
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 1.7e-44 184.9 120 74.2
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 1.7e-44 184.9 124 70.2
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 2.3e-44 184.5 120 73.3
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 2.3e-44 184.5 117 77.8
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 3.0e-44 184.1 120 73.3
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 3.0e-44 184.1 170 58.2
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 3.9e-44 183.7 117 75.2
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 3.9e-44 183.7 118 74.6
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 5.0e-44 183.3 120 72.5
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 6.6e-44 183.0 120 73.3
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 6.6e-44 183.0 120 73.3
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 6.6e-44 183.0 174 58.0
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 8.6e-44 182.6 118 74.6
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.1e-43 182.2 170 58.2
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 1.1e-43 182.2 120 71.7
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 1.9e-43 181.4 120 72.5
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 1.9e-43 181.4 118 75.4
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 1.9e-43 181.4 118 73.7
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 2.5e-43 181.0 118 72.9
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 2.5e-43 181.0 161 58.4
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 2.5e-43 181.0 118 73.7
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 3.3e-43 180.6 117 75.2
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 3.3e-43 180.6 118 74.6
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 3.3e-43 180.6 119 73.1
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 3.3e-43 180.6 124 68.5
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 3.3e-43 180.6 124 68.5
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 4.3e-43 180.3 118 74.6
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 4.3e-43 180.3 119 71.4
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 5.6e-43 179.9 118 74.6
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 5.6e-43 179.9 118 73.7
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 5.6e-43 179.9 118 72.9
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 5.6e-43 179.9 118 72.9
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 7.3e-43 179.5 118 74.6
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 7.3e-43 179.5 118 73.7
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 9.5e-43 179.1 117 72.6
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 1.6e-42 178.3 118 74.6
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 1.6e-42 178.3 119 72.3
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 2.8e-42 177.6 114 75.4
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 3.6e-42 177.2 117 73.5
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 4.7e-42 176.8 117 71.8
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 4.7e-42 176.8 118 70.3
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 6.2e-42 176.4 123 69.1
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 8.1e-42 176.0 118 72.0
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 8.1e-42 176.0 115 72.2
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 8.1e-42 176.0 115 72.2
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 8.1e-42 176.0 115 72.2
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 8.1e-42 176.0 118 70.3
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 1.1e-41 175.6 125 68.0
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 1.8e-41 174.9 148 58.1
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 2.3e-41 174.5 104 88.5
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 2.3e-41 174.5 114 73.7
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 2.3e-41 174.5 124 67.7
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 3.1e-41 174.1 137 64.2
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 3.1e-41 174.1 117 72.6
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 5.2e-41 173.3 114 72.8
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 1.5e-40 171.8 114 71.1
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 1.5e-40 171.8 114 71.1
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 1.5e-40 171.8 178 51.7
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 1.5e-40 171.8 122 70.5
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 2.6e-40 171.0 114 70.2
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 2.6e-40 171.0 114 70.2
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 2.6e-40 171.0 127 65.4
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 2.6e-40 171.0 123 65.9
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 3.4e-40 170.6 114 70.2
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 3.4e-40 170.6 114 70.2
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 3.4e-40 170.6 114 70.2
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 3.4e-40 170.6 114 70.2
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 3.4e-40 170.6 127 65.4
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 7.5e-40 169.5 127 65.4
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 7.5e-40 169.5 114 70.2
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 7.5e-40 169.5 114 70.2
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 7.5e-40 169.5 117 73.5
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 9.9e-40 169.1 114 69.3
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 1.7e-39 168.3 114 70.2
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 1.7e-39 168.3 114 70.2
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 3.7e-39 167.2 114 69.3
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 4.9e-39 166.8 114 74.6
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 4.9e-39 166.8 117 70.1
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 1.4e-38 165.2 117 72.6
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 4.1e-38 163.7 114 71.1
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 1.1e-35 155.6 102 77.5
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 1.9e-35 154.8 111 70.3
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 1.1e-33 149.1 143 53.8
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 5.2e-33 146.7 208 46.6
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 6.8e-33 146.4 95 77.9
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 2.6e-32 144.4 96 70.8
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 1.1e-30 139.0 157 48.4
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 5.4e-30 136.7 118 56.8
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 1.6e-29 135.2 87 72.4
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 2.7e-29 134.4 118 57.6
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 2.7e-29 134.4 150 49.3
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 6.0e-29 133.3 93 66.7
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 7.8e-29 132.9 118 56.8
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 2.3e-28 131.3 86 69.8
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 2.3e-28 131.3 118 55.9
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 5.1e-28 130.2 90 66.7
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 8.6e-28 129.4 96 64.6
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 8.6e-28 129.4 96 64.6
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 1.1e-27 129.0 83 71.1
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 1.5e-27 128.6 86 67.4
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 1.5e-27 128.6 88 68.2
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 1.5e-27 128.6 83 71.1
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 4.3e-27 127.1 117 54.7
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 7.3e-27 126.3 84 67.9
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 9.6e-27 125.9 83 69.9
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.2e-26 125.6 141 48.2
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.6e-26 125.2 141 49.6
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 1.6e-26 125.2 87 70.1
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 2.1e-26 124.8 141 49.6
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 2.1e-26 124.8 141 49.6
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 2.8e-26 124.4 81 70.4
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 1.8e-25 121.7 84 65.5
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 1.9e-22 111.7 77 64.9
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 6.6e-20 103.2 66 77.3
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 6.2e-18 96.7 118 46.6
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 5.3e-17 93.6 57 82.5
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 3.4e-16 90.9 59 74.6
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 3.1e-09 67.8 45 77.8
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 7.6e-08 63.2 104 37.5


User provided reference genes

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