Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 1.2e-82 310.1 184 100.0
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 4.1e-19 99.0 87 58.6
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 4.1e-19 99.0 87 59.8
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 1.5e-18 97.1 86 58.1
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 2.0e-18 96.7 87 58.6
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 2.0e-18 96.7 87 57.5
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 2.0e-18 96.7 87 57.5
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 3.4e-18 95.9 87 56.3
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 3.4e-18 95.9 147 42.2
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 5.9e-18 95.1 95 53.7
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 7.7e-18 94.7 85 60.0
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 1.3e-17 94.0 87 56.3
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 1.7e-17 93.6 86 55.8
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 1.7e-17 93.6 87 57.5
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 2.2e-17 93.2 86 54.7
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 2.2e-17 93.2 86 54.7
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 2.9e-17 92.8 87 55.2
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 2.9e-17 92.8 87 56.3
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 2.9e-17 92.8 87 55.2
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 2.9e-17 92.8 87 56.3
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 2.9e-17 92.8 87 55.2
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 3.8e-17 92.4 87 55.2
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 3.8e-17 92.4 87 55.2
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 3.8e-17 92.4 87 54.0
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 3.8e-17 92.4 87 56.3
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 5.0e-17 92.0 87 55.2
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 5.0e-17 92.0 87 55.2
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 5.0e-17 92.0 87 54.0
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 5.0e-17 92.0 87 55.2
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 5.0e-17 92.0 87 56.3
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 5.0e-17 92.0 87 56.3
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 6.5e-17 91.7 87 55.2
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 8.5e-17 91.3 80 57.5
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 8.5e-17 91.3 87 55.2
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 8.5e-17 91.3 87 55.2
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 8.5e-17 91.3 87 55.2
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 8.5e-17 91.3 87 55.2
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 8.5e-17 91.3 78 57.7
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 8.5e-17 91.3 87 55.2
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 8.5e-17 91.3 87 55.2
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 1.1e-16 90.9 87 55.2
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 1.4e-16 90.5 87 54.0
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 1.4e-16 90.5 87 54.0
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 1.4e-16 90.5 87 54.0
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 1.9e-16 90.1 87 55.2
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 1.9e-16 90.1 87 54.0
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 2.5e-16 89.7 87 54.0
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 2.5e-16 89.7 87 54.0
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 2.5e-16 89.7 81 58.0
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 2.5e-16 89.7 81 55.6
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 2.5e-16 89.7 79 55.7
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 2.5e-16 89.7 87 55.2
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 3.2e-16 89.4 85 55.3
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 3.2e-16 89.4 95 53.7
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 3.2e-16 89.4 87 54.0
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 3.2e-16 89.4 87 52.9
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 3.2e-16 89.4 87 55.2
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 3.2e-16 89.4 87 54.0
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 4.2e-16 89.0 78 56.4
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 4.2e-16 89.0 87 54.0
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 4.2e-16 89.0 95 53.7
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 5.5e-16 88.6 87 52.9
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 5.5e-16 88.6 87 51.7
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 5.5e-16 88.6 87 52.9
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 5.5e-16 88.6 87 52.9
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 7.2e-16 88.2 87 52.9
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 9.4e-16 87.8 95 53.7
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 9.4e-16 87.8 87 50.6
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 9.4e-16 87.8 87 52.9
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 1.2e-15 87.4 87 52.9
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.2e-15 87.4 87 50.6
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 1.6e-15 87.0 100 50.0
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 1.6e-15 87.0 88 54.5
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 1.6e-15 87.0 87 54.0
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 1.6e-15 87.0 84 52.4
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 2.7e-15 86.3 86 53.5
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 3.6e-15 85.9 87 49.4
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 4.7e-15 85.5 87 50.6
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 4.7e-15 85.5 200 35.0
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 4.7e-15 85.5 86 52.3
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 7.9e-15 84.7 87 52.9
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 1.0e-14 84.3 95 50.5
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 1.4e-14 84.0 91 50.5
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 2.3e-14 83.2 94 48.9
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 3.9e-14 82.4 77 54.5
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 5.1e-14 82.0 81 53.1
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 6.7e-14 81.6 95 49.5
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 6.7e-14 81.6 87 50.6
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 8.8e-14 81.3 95 48.4
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 1.5e-13 80.5 81 53.1
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 2.6e-13 79.7 87 50.6
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 3.3e-13 79.3 85 54.1
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 4.4e-13 79.0 82 50.0
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 4.4e-13 79.0 84 48.8
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 5.7e-13 78.6 86 48.8
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 5.7e-13 78.6 86 48.8
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 5.7e-13 78.6 87 49.4
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 7.4e-13 78.2 87 47.1
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 9.7e-13 77.8 85 50.6
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 1.3e-12 77.4 95 47.4
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 1.3e-12 77.4 95 48.4
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 1.7e-12 77.0 95 48.4
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 1.7e-12 77.0 95 48.4
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 2.2e-12 76.6 85 49.4
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 2.2e-12 76.6 85 49.4
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 2.2e-12 76.6 85 49.4
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 2.2e-12 76.6 85 49.4
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 2.2e-12 76.6 73 57.5
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 4.8e-12 75.5 82 48.8
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 4.8e-12 75.5 95 47.4
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 4.1e-11 72.4 72 54.2
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 7.0e-11 71.6 87 44.8
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 1.7e-09 67.0 56 58.9
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 3.2e-08 62.8 61 54.1
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 3.2e-08 62.8 84 39.3
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 9.4e-08 61.2 85 40.0
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 1.2e-07 60.8 85 40.0
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 1.2e-07 60.8 85 40.0
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 1.2e-07 60.8 85 40.0
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 3.6e-07 59.3 85 38.8


User provided reference genes

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