Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g39746 Chara braunii HOM05D002496 ORTHO05D002787 0.0e+00 1384.8 659 100.0
SMO332G0020 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 1.3e-56 225.3 493 33.3
SMO334G0130 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 1.3e-56 225.3 493 33.3
CBR_g23680 Chara braunii HOM05D002496 ORTHO05D002787 5.1e-56 223.4 481 34.1
unitig_899.g15353 Utricularia gibba HOM05D002496 ORTHO05D002787 5.1e-56 223.4 499 33.1
MBI01_g25638_MAGBIO Magnolia biondii HOM05D002496 ORTHO05D002787 1.1e-55 222.2 494 33.0
Pp3c17_17550 Physcomitrium patens HOM05D002496 ORTHO05D002787 1.1e-55 222.2 493 33.3
Dinv13473 Davidia involucrata HOM05D002496 ORTHO05D002787 2.5e-55 221.1 494 32.4
Sopen12g035030 Solanum pennellii HOM05D002496 ORTHO05D002787 4.3e-55 220.3 494 32.8
FAN16G0954 Fragaria x ananassa HOM05D002496 ORTHO05D002787 9.7e-55 219.2 496 32.1
Nitab4.5_0000827g0130 Nicotiana tabacum HOM05D002496 ORTHO05D002787 9.7e-55 219.2 494 32.4
Solyc12g100360.1 Solanum lycopersicum HOM05D002496 ORTHO05D002787 9.7e-55 219.2 494 32.8
AagrBONN_evm.TU.Sc2ySwM_344.939 Anthoceros agrestis HOM05D002496 ORTHO05D002787 1.3e-54 218.8 502 32.1
FvH4_3g45741 Fragaria vesca HOM05D002496 ORTHO05D002787 1.3e-54 218.8 496 32.1
FAN25G0679 Fragaria x ananassa HOM05D002496 ORTHO05D002787 1.3e-54 218.8 496 32.1
PGSC0003DMG400004280 Solanum tuberosum HOM05D002496 ORTHO05D002787 1.3e-54 218.8 494 32.6
Lj2A763G36 Lonicera japonica HOM05D002496 ORTHO05D002787 1.6e-54 218.4 494 32.4
RcHm_v2.0_Chr5g0083811 Rosa chinensis HOM05D002496 ORTHO05D002787 1.6e-54 218.4 496 31.9
Ciclev10014012m.g Citrus clementina HOM05D002496 ORTHO05D002787 2.2e-54 218.0 494 32.0
Potri.001G003900 Populus trichocarpa HOM05D002496 ORTHO05D002787 2.2e-54 218.0 494 32.2
SGA_v2.0_scaffold3G01729 Striga asiatica HOM05D002496 ORTHO05D002787 2.2e-54 218.0 495 31.9
Actinidia39346 Actinidia chinensis HOM05D002496 ORTHO05D002787 2.8e-54 217.6 504 32.1
arahy.Tifrunner.gnm1.ann1.3G7H7K Arachis hypogaea HOM05D002496 ORTHO05D002787 2.8e-54 217.6 508 31.9
DCAR_029934 Daucus carota HOM05D002496 ORTHO05D002787 3.7e-54 217.2 493 32.7
Migut.D02566 Erythranthe guttata HOM05D002496 ORTHO05D002787 3.7e-54 217.2 495 32.5
Migut.D02589 Erythranthe guttata HOM05D002496 ORTHO05D002787 3.7e-54 217.2 495 32.5
Lj4g0028195 Lotus japonicus HOM05D002496 ORTHO05D002787 3.7e-54 217.2 494 32.4
Prupe.6G003300 Prunus persica HOM05D002496 ORTHO05D002787 3.7e-54 217.2 494 31.8
TAR369G0007 Trochodendron aralioides HOM05D002496 ORTHO05D002787 4.8e-54 216.9 501 31.9
SEGI_26512 Sequoiadendron giganteum HOM05D002496 ORTHO05D002787 6.3e-54 216.5 497 33.0
GSVIVG01025470001 Vitis vinifera HOM05D002496 ORTHO05D002787 6.3e-54 216.5 501 31.9
BcaB04g16962 Brassica carinata HOM05D002496 ORTHO05D002787 8.2e-54 216.1 504 31.5
CiPaw.13G177100 Carya illinoinensis HOM05D002496 ORTHO05D002787 8.2e-54 216.1 494 32.2
Peaxi162Scf00738g00312 Petunia axillaris HOM05D002496 ORTHO05D002787 8.2e-54 216.1 494 32.4
HPP92_024699 Vanilla planifolia HOM05D002496 ORTHO05D002787 8.2e-54 216.1 494 32.4
MSTRG.20937 Avicennia marina HOM05D002496 ORTHO05D002787 1.1e-53 215.7 495 31.9
Eucgr.J01766 Eucalyptus grandis HOM05D002496 ORTHO05D002787 1.1e-53 215.7 496 32.3
HanXRQChr13g0405751 Helianthus annuus HOM05D002496 ORTHO05D002787 1.1e-53 215.7 494 32.4
Duzib168G0200 Durio zibethinus HOM05D002496 ORTHO05D002787 1.4e-53 215.3 493 31.8
Nn7g35861 Nelumbo nucifera HOM05D002496 ORTHO05D002787 1.4e-53 215.3 494 31.6
arahy.Tifrunner.gnm1.ann1.P751E4 Arachis hypogaea HOM05D002496 ORTHO05D002787 1.8e-53 214.9 494 32.4
Potri.003G221100 Populus trichocarpa HOM05D002496 ORTHO05D002787 1.8e-53 214.9 494 31.6
Sabra01G0002600 Salix brachista HOM05D002496 ORTHO05D002787 1.8e-53 214.9 496 31.7
SalBow2G0058 Salvia bowleyana HOM05D002496 ORTHO05D002787 2.4e-53 214.5 496 32.5
vmacro12599 Vaccinium macrocarpon HOM05D002496 ORTHO05D002787 2.4e-53 214.5 496 32.3
ATR0827G153 Amborella trichopoda HOM05D002496 ORTHO05D002787 3.1e-53 214.2 494 32.0
ClCG03G014540 Citrullus lanatus HOM05D002496 ORTHO05D002787 3.1e-53 214.2 494 31.8
Rhsim01G0184300 Rhododendron simsii HOM05D002496 ORTHO05D002787 3.1e-53 214.2 496 32.1
Sed0022657 Sechium edule HOM05D002496 ORTHO05D002787 3.1e-53 214.2 494 31.6
TAR623G0218 Trochodendron aralioides HOM05D002496 ORTHO05D002787 3.1e-53 214.2 501 31.7
VMungo0251G1507 Vigna mungo HOM05D002496 ORTHO05D002787 3.1e-53 214.2 497 32.6
Cpa.g.sc119.40 Carica papaya HOM05D002496 ORTHO05D002787 4.1e-53 213.8 502 31.7
Ca_17842_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 4.1e-53 213.8 494 32.4
Ca_17843_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 4.1e-53 213.8 494 32.4
MELO3C015577.2 Cucumis melo HOM05D002496 ORTHO05D002787 4.1e-53 213.8 494 31.4
CsaV3_1G041650 Cucumis sativus L. HOM05D002496 ORTHO05D002787 4.1e-53 213.8 494 31.4
MD11G1003500 Malus domestica HOM05D002496 ORTHO05D002787 4.1e-53 213.8 494 31.8
Manes.03G087600 Manihot esculenta HOM05D002496 ORTHO05D002787 4.1e-53 213.8 494 31.4
Medtr8g088520 Medicago truncatula HOM05D002496 ORTHO05D002787 4.1e-53 213.8 494 32.2
THA.LOC104822681 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 4.1e-53 213.8 494 31.8
TPR.G6803 Trifolium pratense HOM05D002496 ORTHO05D002787 4.1e-53 213.8 494 32.4
A06p00230 Brassica napus HOM05D002496 ORTHO05D002787 5.3e-53 213.4 494 32.0
C06p10330 Brassica napus HOM05D002496 ORTHO05D002787 5.3e-53 213.4 494 32.0
BraA06t23239Z Brassica rapa HOM05D002496 ORTHO05D002787 5.3e-53 213.4 494 32.0
Cfa009562 Carpinus fangiana HOM05D002496 ORTHO05D002787 5.3e-53 213.4 494 31.8
Psat7g063600 Pisum sativum HOM05D002496 ORTHO05D002787 5.3e-53 213.4 494 32.4
PGR119G1355 Punica granatum HOM05D002496 ORTHO05D002787 5.3e-53 213.4 495 31.7
Haze_22941 Corylus avellana HOM05D002496 ORTHO05D002787 6.9e-53 213.0 494 31.8
HanXRQChr02g0057261 Helianthus annuus HOM05D002496 ORTHO05D002787 6.9e-53 213.0 494 32.2
Zm00001eb014030 Zea mays HOM05D002496 ORTHO05D002787 6.9e-53 213.0 494 32.6
BcaC08g43618 Brassica carinata HOM05D002496 ORTHO05D002787 9.0e-53 212.6 494 32.0
QL01p003675 Quercus lobata HOM05D002496 ORTHO05D002787 9.0e-53 212.6 487 32.2
BolC6t36109H Brassica oleracea HOM05D002496 ORTHO05D002787 1.2e-52 212.2 494 31.8
Carub.0001s4386 Capsella rubella HOM05D002496 ORTHO05D002787 1.2e-52 212.2 494 32.2
Glyma.08G125500 Glycine max HOM05D002496 ORTHO05D002787 1.2e-52 212.2 497 32.6
Thhalv10011175m.g Eutrema salsugineum HOM05D002496 ORTHO05D002787 1.5e-52 211.8 494 31.8
Glyma.05G167200 Glycine max HOM05D002496 ORTHO05D002787 1.5e-52 211.8 495 32.5
Gohir.A03G022300 Gossypium hirsutum HOM05D002496 ORTHO05D002787 1.5e-52 211.8 493 31.4
Lalb_Chr13g0295581 Lupinus albus HOM05D002496 ORTHO05D002787 1.5e-52 211.8 494 32.0
Thecc.09G199700 Theobroma cacao HOM05D002496 ORTHO05D002787 1.5e-52 211.8 494 31.4
Os02g0709400 Oryza sativa ssp. japonica HOM05D002496 ORTHO05D002787 2.0e-52 211.5 490 32.7
PSO384G1583 Papaver somniferum HOM05D002496 ORTHO05D002787 2.0e-52 211.5 495 32.7
Sp1g41030 Schrenkiella parvula HOM05D002496 ORTHO05D002787 2.0e-52 211.5 494 31.8
Sc16g0012220 Simmondsia chinensis HOM05D002496 ORTHO05D002787 2.0e-52 211.5 497 31.4
Phvul.002G247600 Phaseolus vulgaris HOM05D002496 ORTHO05D002787 2.6e-52 211.1 497 32.4
Aqoxy1G00475 Aquilegia oxysepala HOM05D002496 ORTHO05D002787 3.4e-52 210.7 501 31.5
AT1G55350 Arabidopsis thaliana HOM05D002496 ORTHO05D002787 3.4e-52 210.7 494 31.8
Cc01_g00070 Coffea canephora HOM05D002496 ORTHO05D002787 3.4e-52 210.7 492 32.1
Gorai.003G153800 Gossypium raimondii HOM05D002496 ORTHO05D002787 4.5e-52 210.3 493 31.4
Oeu023700.1 Olea europaea HOM05D002496 ORTHO05D002787 4.5e-52 210.3 494 31.6
PSO339G0705 Papaver somniferum HOM05D002496 ORTHO05D002787 4.5e-52 210.3 494 32.8
AL1G63400 Arabidopsis lyrata HOM05D002496 ORTHO05D002787 5.9e-52 209.9 494 31.8
CSS0046180 Camellia sinensis var. sinensis HOM05D002496 ORTHO05D002787 5.9e-52 209.9 501 31.5
EL10Ac4g10386 Beta vulgaris HOM05D002496 ORTHO05D002787 7.7e-52 209.5 495 32.1
THA.LOC104810325 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 7.7e-52 209.5 495 31.9
CANSAT11G2110 Cannabis sativa HOM05D002496 ORTHO05D002787 1.0e-51 209.1 496 31.5
Hma1.2p1_0241F.1_g100580 Hydrangea macrophylla HOM05D002496 ORTHO05D002787 1.0e-51 209.1 496 31.5
Sed0000966 Sechium edule HOM05D002496 ORTHO05D002787 1.0e-51 209.1 494 30.8
Hund21627 Selenicereus undatus HOM05D002496 ORTHO05D002787 1.0e-51 209.1 493 31.4
CAN.G2119.1 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-51 208.8 484 31.8
CARHR045010 Cardamine hirsuta HOM05D002496 ORTHO05D002787 1.3e-51 208.8 494 31.6
Aa31LG10G1150 Aethionema arabicum HOM05D002496 ORTHO05D002787 2.9e-51 207.6 487 31.4
AUR62040903 Chenopodium quinoa HOM05D002496 ORTHO05D002787 5.0e-51 206.8 494 31.8
MD03G1003600 Malus domestica HOM05D002496 ORTHO05D002787 5.0e-51 206.8 494 31.0
Oeu023952.2 Olea europaea HOM05D002496 ORTHO05D002787 2.5e-50 204.5 494 31.2
Mapoly0026s0110 Marchantia polymorpha HOM05D002496 ORTHO05D002787 4.2e-50 203.8 498 31.1
Mapoly0026s0090 Marchantia polymorpha HOM05D002496 ORTHO05D002787 1.6e-49 201.8 497 31.2
CAN.G2376.2 Capsicum annuum HOM05D002496 ORTHO05D002787 3.6e-49 200.7 458 32.5
AUR62019163 Chenopodium quinoa HOM05D002496 ORTHO05D002787 6.1e-49 199.9 473 31.9
ECA233G0145 Erigeron canadensis HOM05D002496 ORTHO05D002787 1.5e-47 195.3 378 35.2
Lsat_1_v5_gn_6_53141 Lactuca sativa HOM05D002496 ORTHO05D002787 4.3e-47 193.7 378 35.2
CDE02G1358 Ceratophyllum demersum HOM05D002496 ORTHO05D002787 4.8e-46 190.3 444 32.2
Sabra03G0164600 Salix brachista HOM05D002496 ORTHO05D002787 4.8e-46 190.3 538 28.8
Gohir.D03G146400 Gossypium hirsutum HOM05D002496 ORTHO05D002787 4.5e-44 183.7 331 35.3
COL.COLO4_05794 Corchorus olitorius HOM05D002496 ORTHO05D002787 7.2e-42 176.4 382 33.5
Atru.chr3.2106 Acer truncatum HOM05D002496 ORTHO05D002787 6.7e-40 169.9 291 35.4
FvH4_3g45640 Fragaria vesca HOM05D002496 ORTHO05D002787 5.7e-39 166.8 330 33.6
CAN.G1783.6 Capsicum annuum HOM05D002496 ORTHO05D002787 4.1e-37 160.6 291 35.1
CBR_g37133 Chara braunii HOM05D002496 ORTHO05D002787 5.0e-35 153.7 344 31.1
CAN.G1751.13 Capsicum annuum HOM05D002496 ORTHO05D002787 7.2e-34 149.8 450 29.3
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 1.8e-32 145.2 348 32.2
MCO05G112 Micromonas commoda HOM05D002496 ORTHO05D002787 5.2e-32 143.7 338 30.5
FAN11G2291 Fragaria x ananassa HOM05D002496 ORTHO05D002787 2.6e-31 141.4 329 31.9
FAN11G3798 Fragaria x ananassa HOM05D002496 ORTHO05D002787 1.3e-30 139.0 258 36.0
FvH4_3g45670 Fragaria vesca HOM05D002496 ORTHO05D002787 4.8e-30 137.1 353 30.9
Cre02.g112250 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 7.7e-28 129.8 351 29.3
CAN.G1669.10 Capsicum annuum HOM05D002496 ORTHO05D002787 4.2e-26 124.0 367 28.9
Cre10.g448850 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 3.6e-25 120.9 407 28.5
MCO07G349 Micromonas commoda HOM05D002496 ORTHO05D002787 3.6e-25 120.9 303 30.0
CBR_g23253 Chara braunii HOM05D002496 ORTHO05D002787 1.0e-24 119.4 270 30.7
Cre02.g112300 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 6.8e-24 116.7 362 27.9
Cre17.g728300 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 2.7e-20 104.8 385 27.5
PRCOL_00006516 Prasinoderma coloniale HOM05D002496 ORTHO05D002787 7.2e-18 96.7 199 33.2
CBR_g38075 Chara braunii HOM05D000019 ORTHO05D002787 4.4e-15 87.4 215 28.8
CBR_g38074 Chara braunii HOM05D007859 ORTHO05D002787 7.5e-15 86.7 190 31.6
MCO11G888 Micromonas commoda HOM05D002496 ORTHO05D002787 1.3e-14 85.9 346 26.0
MCO16G075 Micromonas commoda HOM05D002496 ORTHO05D002787 6.3e-14 83.6 137 36.5
MCO09G147 Micromonas commoda HOM05D002496 ORTHO05D002787 1.4e-13 82.4 325 26.2
CiPaw.14G136900 Carya illinoinensis HOM05D002496 ORTHO05D002787 7.0e-13 80.1 188 30.3
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 1.6e-09 68.9 148 33.8
FAN25G1480 Fragaria x ananassa HOM05D002496 ORTHO05D002787 4.0e-08 64.3 152 28.9


User provided reference genes

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