Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 4.5e-155 551.2 278 100.0
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 2.0e-65 253.4 251 53.8
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 4.8e-64 248.8 273 51.3
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 2.4e-63 246.5 249 53.4
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 6.9e-63 245.0 249 53.4
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 9.1e-63 244.6 248 54.4
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 1.2e-62 244.2 273 50.5
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 1.2e-62 244.2 249 52.2
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 2.0e-62 243.4 247 53.0
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 2.6e-62 243.0 249 53.0
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 2.6e-62 243.0 249 54.6
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 3.4e-62 242.7 248 52.4
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 5.9e-62 241.9 263 51.0
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 7.7e-62 241.5 250 54.0
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 7.7e-62 241.5 249 51.4
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 1.0e-61 241.1 248 52.4
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 1.3e-61 240.7 250 50.8
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 1.3e-61 240.7 247 52.6
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 1.7e-61 240.4 249 51.8
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.7e-61 240.4 248 54.0
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 1.7e-61 240.4 248 54.0
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 2.2e-61 240.0 250 51.2
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 2.2e-61 240.0 250 51.2
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 2.9e-61 239.6 273 49.8
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 3.8e-61 239.2 248 53.2
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 3.8e-61 239.2 250 52.4
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 3.8e-61 239.2 249 51.8
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 3.8e-61 239.2 250 51.6
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 3.8e-61 239.2 249 51.8
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 6.5e-61 238.4 247 51.4
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 6.5e-61 238.4 249 51.4
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 1.1e-60 237.7 249 52.6
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 1.1e-60 237.7 248 52.0
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 1.4e-60 237.3 250 52.4
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 1.4e-60 237.3 249 52.2
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 1.9e-60 236.9 249 51.8
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 1.9e-60 236.9 250 53.2
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 2.5e-60 236.5 250 52.8
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 2.5e-60 236.5 249 53.4
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 3.2e-60 236.1 250 50.8
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 5.5e-60 235.3 252 50.8
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 5.5e-60 235.3 248 50.0
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 5.5e-60 235.3 250 51.6
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 5.5e-60 235.3 249 51.0
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 7.2e-60 235.0 253 50.2
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 7.2e-60 235.0 247 52.2
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 7.2e-60 235.0 249 50.2
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 1.2e-59 234.2 251 50.2
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 1.6e-59 233.8 253 49.8
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 1.6e-59 233.8 273 49.8
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 1.6e-59 233.8 251 49.8
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 1.6e-59 233.8 251 49.8
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 1.6e-59 233.8 249 51.0
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 1.6e-59 233.8 273 48.0
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 2.1e-59 233.4 249 50.6
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 2.1e-59 233.4 265 49.8
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 2.1e-59 233.4 273 49.5
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 2.1e-59 233.4 273 49.5
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 2.1e-59 233.4 273 49.5
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 2.1e-59 233.4 273 50.2
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 2.1e-59 233.4 250 51.6
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 2.7e-59 233.0 253 49.0
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 2.7e-59 233.0 250 51.2
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 3.6e-59 232.6 249 49.4
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 4.7e-59 232.3 248 50.4
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 1.0e-58 231.1 248 49.6
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 1.0e-58 231.1 250 50.8
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 1.4e-58 230.7 253 49.4
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 1.8e-58 230.3 253 49.4
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 1.8e-58 230.3 261 48.3
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 2.3e-58 229.9 273 46.5
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 3.0e-58 229.6 253 49.0
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 3.0e-58 229.6 248 50.0
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 3.9e-58 229.2 253 49.4
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 5.1e-58 228.8 253 49.4
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 5.1e-58 228.8 249 49.4
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 6.7e-58 228.4 255 49.0
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 6.7e-58 228.4 248 49.2
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 6.7e-58 228.4 268 48.1
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 2.6e-57 226.5 249 50.2
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 5.7e-57 225.3 253 48.6
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 1.7e-56 223.8 253 48.6
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 1.7e-56 223.8 265 47.5
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 2.2e-56 223.4 260 49.6
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 4.8e-56 222.2 247 49.8
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 6.3e-56 221.9 270 47.0
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 1.8e-55 220.3 247 49.8
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 9.1e-55 218.0 253 46.6
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 2.6e-54 216.5 240 50.8
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 3.8e-53 212.6 226 50.9
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 5.0e-53 212.2 253 48.6
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 6.5e-53 211.8 261 47.1
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 1.4e-52 210.7 225 52.4
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 1.9e-52 210.3 225 52.9
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 5.5e-52 208.8 231 49.4
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 5.5e-52 208.8 251 46.2
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 5.5e-52 208.8 276 44.6
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 1.2e-51 207.6 189 58.7
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 8.0e-51 204.9 249 45.8
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 4.8e-48 195.7 248 48.0
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 4.8e-48 195.7 248 48.0
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 6.3e-48 195.3 166 61.4
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 6.5e-45 185.3 259 43.2
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.1e-44 184.5 314 38.5
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 7.2e-44 181.8 234 44.4
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 9.4e-44 181.4 285 40.4
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 1.4e-39 167.5 226 44.2
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 9.1e-39 164.9 182 48.9
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 3.0e-13 80.1 79 50.6
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 4.9e-08 62.8 58 53.4
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 6.4e-08 62.4 96 41.7
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 3.2e-07 60.1 59 54.2


User provided reference genes

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