Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 3596.6 1839 100.0
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1721.4 1965 49.9
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1641.7 1953 47.6
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1623.2 1950 47.7
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 1463.7 1964 43.3
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 1370.5 1951 41.6
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 1367.1 1947 41.7
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 1353.6 1942 41.1
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 1341.6 1959 40.3
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 1337.0 1951 40.9
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 1334.7 1951 40.7
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 1333.5 1947 40.4
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 1330.9 1959 40.6
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 1330.5 1944 39.9
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 1328.9 1943 40.3
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 1328.5 1943 40.2
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 1325.8 1947 40.6
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1325.8 1940 40.1
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1325.5 1939 40.1
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 1321.2 1952 40.9
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 1321.2 1855 41.5
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 1318.5 1946 39.7
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 1309.3 1946 39.9
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 1305.0 1947 40.3
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 1303.9 1960 40.3
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 1303.9 1954 40.4
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 1303.9 1933 40.5
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 1302.3 1960 40.5
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 1301.2 1951 39.9
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 1300.8 1930 40.7
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 1300.0 1933 40.2
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 1300.0 1948 39.6
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 1299.6 1950 39.4
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 1299.3 1952 40.2
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 1298.5 1970 39.4
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1298.1 1926 40.2
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1298.1 1950 40.1
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 1296.2 1946 39.8
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 1295.4 1947 40.1
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1292.3 1924 39.9
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1290.0 1957 40.1
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 1290.0 1957 40.5
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1287.3 1940 39.8
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 1284.2 1915 40.2
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 1276.5 1943 39.4
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 1275.4 1935 39.1
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 1275.0 1952 39.2
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 1270.4 1972 38.7
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 1265.4 1876 39.8
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 1263.4 1955 38.4
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 1262.7 1869 39.4
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 1259.2 1868 39.7
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 1257.7 1868 39.1
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 1256.1 1957 38.6
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 1255.7 1955 38.4
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 1255.7 2021 38.0
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 1251.5 1885 39.1
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 1242.3 1971 39.1
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 1237.2 1965 38.0
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1234.2 1598 43.6
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 1232.6 1946 39.9
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 1229.9 1960 38.0
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 1228.8 1964 39.1
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1223.8 1875 38.8
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 1221.1 2014 37.3
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 1215.7 2006 38.1
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 1215.3 1868 38.4
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 1213.0 2078 37.3
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 1206.0 1907 38.1
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 1205.7 1940 38.5
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 1202.6 1841 38.7
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 1201.4 2028 37.2
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 1201.0 1874 38.4
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 1187.9 1871 38.0
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 1187.6 1872 38.0
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 1171.4 1782 40.0
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 1153.3 1826 38.7
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 1151.0 1944 37.8
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 1107.8 1857 36.8
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 1106.3 1702 39.5
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 1093.6 1658 39.4
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 1087.4 2383 33.0
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 6.8e-300 1035.0 1575 39.9
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 6.0e-296 1021.9 1514 40.1
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 2.3e-279 966.8 1442 39.1
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 2.8e-277 959.9 1453 39.1
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 3.4e-275 953.0 1476 39.0
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 8.7e-263 911.8 1160 43.3
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 1.0e-226 792.0 1363 37.0
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 3.2e-217 760.4 1292 37.5
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 2.2e-213 747.7 1463 33.1
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 3.8e-210 736.9 1212 36.6
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 9.9e-190 669.1 707 51.3
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 1.3e-186 658.7 1119 38.2
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 4.9e-181 640.2 1010 40.6
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 1.7e-178 631.7 734 44.7
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 2.5e-177 627.9 738 45.7
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 9.6e-169 599.4 760 42.2
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 1.5e-166 592.0 1022 37.3
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 1.9e-161 575.1 1055 37.1
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 3.4e-158 564.3 739 40.9
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 3.9e-154 550.8 1627 28.1
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 6.7e-138 496.9 1613 27.0
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 6.9e-135 486.9 1145 33.0
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 7.2e-132 476.9 688 39.7
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 3.2e-116 424.9 1005 30.1
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 6.3e-112 410.6 490 44.7
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 1.2e-105 389.8 730 37.1
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.0e-85 323.6 504 38.9
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 4.3e-84 318.2 398 43.5
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 3.9e-77 295.0 578 33.9
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 5.6e-76 291.2 493 36.5
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 9.2e-63 247.3 213 57.3
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 3.0e-61 242.3 310 41.3
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 1.5e-57 229.9 244 48.0
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 7.3e-52 211.1 360 37.5
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 1.1e-50 207.2 327 37.3
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 1.1e-50 207.2 1778 22.7
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 2.4e-50 206.1 226 46.0
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 4.9e-48 198.4 326 37.4
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 5.4e-47 194.9 196 49.0
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 3.5e-46 192.2 208 49.5
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 6.0e-46 191.4 310 40.6
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 4.3e-36 158.7 327 35.5
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 4.3e-36 158.7 176 47.2
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 1.2e-33 150.6 465 29.2
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 3.4e-33 149.1 208 42.8
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 2.5e-31 142.9 835 25.0
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 4.3e-28 132.1 208 35.1
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 2.0e-25 123.2 332 30.4
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 4.2e-23 115.5 221 35.7
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 5.5e-23 115.2 113 51.3
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.2e-22 114.0 181 40.3
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 3.6e-22 112.5 118 49.2
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 1.4e-21 110.5 292 28.1
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 3.0e-21 109.4 383 26.4
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 2.5e-20 106.3 353 28.9
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 3.3e-20 105.9 284 32.7
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.7e-19 103.6 83 60.2
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 2.2e-19 103.2 147 38.8
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 1.1e-18 100.9 226 31.4
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 1.1e-18 100.9 226 31.4
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 1.8e-18 100.1 510 23.7
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 5.3e-18 98.6 97 50.5
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 2.6e-17 96.3 171 36.8
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 3.4e-17 95.9 120 45.0
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 2.1e-14 86.7 77 53.2
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 6.7e-13 81.6 335 25.4
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 4.4e-12 79.0 65 61.5
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 2.8e-11 76.3 143 35.0
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 8.2e-11 74.7 75 52.0
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 1.2e-09 70.9 116 32.8
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.4e-07 63.9 168 33.9
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 2.5e-07 63.2 56 51.8
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 3.2e-07 62.8 211 28.0
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 4.2e-07 62.4 103 36.9
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 4.2e-07 62.4 91 41.8
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 4.2e-07 62.4 67 43.3
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 1.6e-06 60.5 50 54.0
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 1.6e-06 60.5 60 51.7
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 8.0e-06 58.2 50 52.0


User provided reference genes

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