Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 4.6e-166 587.8 293 100.0
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 2.9e-160 568.5 293 96.2
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 3.0e-101 372.5 230 74.8
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 1.3e-99 367.1 244 71.3
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 1.4e-98 363.6 257 68.1
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 1.4e-98 363.6 262 67.2
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 7.0e-98 361.3 257 67.7
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 7.0e-98 361.3 257 68.1
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 7.0e-98 361.3 257 68.1
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 1.6e-97 360.1 257 67.7
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 2.7e-97 359.4 257 68.5
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 3.5e-97 359.0 267 67.0
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 3.5e-97 359.0 257 67.3
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 4.5e-97 358.6 257 67.3
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 5.9e-97 358.2 240 71.2
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 5.9e-97 358.2 230 73.9
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 7.7e-97 357.8 230 71.7
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 1.0e-96 357.5 258 67.8
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 1.0e-96 357.5 257 67.7
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 1.0e-96 357.5 257 66.9
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 1.3e-96 357.1 257 68.1
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 1.7e-96 356.7 240 70.4
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 2.3e-96 356.3 257 67.7
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 2.3e-96 356.3 251 69.3
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 2.9e-96 355.9 257 66.9
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 2.9e-96 355.9 257 68.5
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 2.9e-96 355.9 257 67.3
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 3.8e-96 355.5 233 71.7
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 3.8e-96 355.5 264 65.2
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 5.0e-96 355.1 257 66.5
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 5.0e-96 355.1 257 68.1
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 5.0e-96 355.1 257 66.1
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 6.6e-96 354.8 258 67.8
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 6.6e-96 354.8 260 65.8
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 8.6e-96 354.4 229 72.5
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 1.1e-95 354.0 258 67.8
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 1.1e-95 354.0 258 67.8
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 1.5e-95 353.6 229 72.9
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 1.5e-95 353.6 257 66.5
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 1.9e-95 353.2 257 66.9
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 1.9e-95 353.2 240 70.4
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 2.5e-95 352.8 230 71.7
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 3.3e-95 352.4 257 67.7
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 3.3e-95 352.4 237 70.5
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 3.3e-95 352.4 258 68.2
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 3.3e-95 352.4 257 66.1
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 4.2e-95 352.1 240 69.6
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 4.2e-95 352.1 240 70.4
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 5.5e-95 351.7 257 66.1
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 5.5e-95 351.7 240 69.6
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 5.5e-95 351.7 257 65.8
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 7.2e-95 351.3 259 64.9
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 7.2e-95 351.3 269 65.1
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 7.2e-95 351.3 257 66.5
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 7.2e-95 351.3 258 67.1
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 7.2e-95 351.3 257 66.5
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 9.5e-95 350.9 269 65.1
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 9.5e-95 350.9 240 69.2
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 9.5e-95 350.9 257 66.5
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 9.5e-95 350.9 258 67.1
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 1.2e-94 350.5 230 71.3
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 1.6e-94 350.1 230 71.3
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 1.6e-94 350.1 257 66.1
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 1.6e-94 350.1 235 69.8
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 2.1e-94 349.7 243 68.3
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 2.1e-94 349.7 238 70.6
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 2.8e-94 349.4 229 71.6
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.8e-94 349.4 240 68.8
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 2.8e-94 349.4 269 65.1
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 2.8e-94 349.4 235 69.8
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 3.6e-94 349.0 230 70.9
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 3.6e-94 349.0 229 71.2
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 3.6e-94 349.0 257 66.5
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 4.7e-94 348.6 230 70.9
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 6.1e-94 348.2 240 69.6
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 6.1e-94 348.2 261 65.9
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 8.0e-94 347.8 257 66.1
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 1.0e-93 347.4 257 66.1
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 1.0e-93 347.4 240 69.2
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 1.0e-93 347.4 231 71.0
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 1.0e-93 347.4 243 69.5
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 1.8e-93 346.7 257 65.8
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.8e-93 346.7 277 62.8
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 1.8e-93 346.7 230 70.4
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 2.3e-93 346.3 240 69.6
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 3.0e-93 345.9 257 65.8
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 4.0e-93 345.5 240 69.2
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 4.0e-93 345.5 253 66.0
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 4.0e-93 345.5 257 66.1
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 4.0e-93 345.5 258 65.9
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 5.2e-93 345.1 240 69.2
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 5.2e-93 345.1 257 65.4
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 5.2e-93 345.1 240 68.3
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 6.8e-93 344.7 240 68.3
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 6.8e-93 344.7 241 68.9
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 8.9e-93 344.4 257 65.0
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 1.2e-92 344.0 257 65.4
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 1.2e-92 344.0 258 65.5
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 1.5e-92 343.6 235 68.9
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.5e-92 343.6 236 69.5
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 2.6e-92 342.8 231 69.3
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 2.6e-92 342.8 231 69.3
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 3.4e-92 342.4 270 63.0
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 3.4e-92 342.4 270 63.0
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 3.4e-92 342.4 257 64.6
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 7.5e-92 341.3 257 65.0
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 9.8e-92 340.9 263 63.1
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 1.3e-91 340.5 270 62.2
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 1.7e-91 340.1 257 65.0
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 2.8e-91 339.3 233 68.7
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 2.8e-91 339.3 233 68.7
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 4.9e-91 338.6 257 64.6
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 1.1e-90 337.4 257 64.2
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 1.1e-90 337.4 235 68.1
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 5.4e-90 335.1 270 62.2
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 2.7e-89 332.8 215 72.1
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 7.8e-89 331.3 230 68.7
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 1.3e-88 330.5 309 56.3
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 1.9e-87 326.6 279 58.8
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 7.3e-87 324.7 257 62.6
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 1.4e-85 320.5 203 72.9
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 6.4e-83 311.6 279 57.7
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 2.4e-82 309.7 207 70.0
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 4.1e-82 308.9 249 60.6
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.6e-81 307.0 230 63.9
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 1.4e-77 293.9 262 57.6
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 3.4e-76 289.3 257 58.0
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 3.4e-76 289.3 230 61.7
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 3.5e-73 279.3 252 55.6
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 4.6e-73 278.9 301 48.5
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.5e-71 273.9 215 62.8
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 4.3e-71 272.3 322 47.8
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 4.0e-69 265.8 240 54.2
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 5.4e-66 255.4 163 73.0
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 9.2e-66 254.6 160 75.0
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 3.9e-64 249.2 152 76.3
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 8.6e-64 248.1 226 56.2
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 8.6e-64 248.1 159 73.0
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 2.8e-62 243.0 199 60.3
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 1.4e-58 230.7 148 72.3
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 1.6e-57 227.3 162 67.3
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 7.8e-57 224.9 224 54.5
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 1.9e-50 203.8 205 48.3
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 2.1e-49 200.3 117 81.2
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 1.1e-47 194.5 116 77.6
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 1.2e-44 184.5 211 46.9
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 4.5e-44 182.6 133 63.9
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 7.9e-41 171.8 101 79.2
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 8.7e-40 168.3 258 41.1
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 4.0e-37 159.5 109 68.8
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 3.2e-34 149.8 119 60.5
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 5.7e-31 139.0 88 69.3
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 2.1e-30 137.1 82 72.0
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 2.4e-29 133.7 163 47.2
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 3.1e-29 133.3 88 67.0
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.0e-29 132.9 88 67.0
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 5.3e-29 132.5 76 75.0
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 5.8e-28 129.0 88 64.8
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 1.4e-26 124.4 83 66.3
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.9e-26 124.0 81 69.1
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 1.9e-26 124.0 82 69.5
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 9.3e-26 121.7 81 66.7
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 6.1e-25 119.0 81 65.4
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.3e-24 117.9 74 70.3
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.3e-24 117.9 74 70.3
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.3e-24 117.9 74 70.3
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.3e-24 117.9 74 70.3
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.8e-24 117.5 74 70.3
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.5e-23 114.4 70 72.9
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 3.3e-23 113.2 74 68.9
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 5.7e-23 112.5 97 57.7
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 9.7e-23 111.7 84 61.9
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 3.7e-22 109.8 75 68.0
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 1.1e-21 108.2 69 71.0
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 1.3e-19 101.3 84 61.9
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 1.4e-10 71.2 67 55.2
arahy.Tifrunner.gnm1.ann1.52VWXA Arachis hypogaea HOM05D000069 ORTHO05D086405 3.7e-06 56.6 30 86.7


User provided reference genes

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