Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 6.4e-117 424.1 214 100.0
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.6e-14 84.0 82 52.4
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.7e-14 83.2 82 52.4
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 5.1e-13 79.0 56 66.1
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 2.5e-12 76.6 82 48.8
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 4.3e-12 75.9 87 43.7
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 7.3e-12 75.1 57 59.6
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 9.6e-12 74.7 59 54.2
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 1.2e-11 74.3 83 44.6
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 1.6e-11 73.9 63 57.1
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.1e-11 73.6 82 46.3
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.1e-11 73.6 82 46.3
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 2.1e-11 73.6 51 62.7
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 2.8e-11 73.2 52 59.6
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 2.8e-11 73.2 49 65.3
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 3.6e-11 72.8 58 53.4
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 4.7e-11 72.4 63 55.6
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 4.7e-11 72.4 63 54.0
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 4.7e-11 72.4 51 58.8
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 4.7e-11 72.4 50 60.0
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 4.7e-11 72.4 50 60.0
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 6.2e-11 72.0 56 55.4
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 6.2e-11 72.0 56 55.4
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 6.2e-11 72.0 56 55.4
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 6.2e-11 72.0 56 53.6
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 6.2e-11 72.0 49 59.2
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 6.2e-11 72.0 56 53.6
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 6.2e-11 72.0 56 55.4
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 8.1e-11 71.6 56 55.4
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 8.1e-11 71.6 49 61.2
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 8.1e-11 71.6 49 59.2
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 8.1e-11 71.6 82 41.5
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 8.1e-11 71.6 75 48.0
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 1.1e-10 71.2 56 55.4
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 1.1e-10 71.2 56 55.4
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 1.1e-10 71.2 56 53.6
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.1e-10 71.2 56 55.4
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 1.1e-10 71.2 56 55.4
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 1.1e-10 71.2 49 61.2
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 1.1e-10 71.2 50 62.0
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 1.1e-10 71.2 65 49.2
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.1e-10 71.2 50 56.0
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 1.1e-10 71.2 82 43.9
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 1.1e-10 71.2 49 59.2
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 1.1e-10 71.2 49 59.2
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 1.4e-10 70.9 56 53.6
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 1.4e-10 70.9 74 50.0
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 1.4e-10 70.9 56 53.6
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 1.4e-10 70.9 63 57.1
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 1.4e-10 70.9 56 53.6
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.4e-10 70.9 50 56.0
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.4e-10 70.9 50 56.0
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 1.4e-10 70.9 56 53.6
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 1.8e-10 70.5 73 42.5
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 1.8e-10 70.5 77 45.5
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 2.4e-10 70.1 85 44.7
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 2.4e-10 70.1 77 44.2
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 2.4e-10 70.1 50 60.0
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 3.1e-10 69.7 128 31.2
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 3.1e-10 69.7 50 56.0
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 4.0e-10 69.3 56 53.6
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 4.0e-10 69.3 56 51.8
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 4.0e-10 69.3 50 56.0
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 4.0e-10 69.3 73 43.8
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 5.2e-10 68.9 91 44.0
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 5.2e-10 68.9 82 40.2
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 8.9e-10 68.2 63 52.4
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 8.9e-10 68.2 76 44.7
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 8.9e-10 68.2 63 52.4
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 1.2e-09 67.8 56 50.0
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 1.2e-09 67.8 56 50.0
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 1.5e-09 67.4 57 54.4
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.5e-09 67.4 107 35.5
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 1.5e-09 67.4 75 42.7
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 2.0e-09 67.0 62 50.0
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 2.0e-09 67.0 49 55.1
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 2.0e-09 67.0 49 57.1
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 2.0e-09 67.0 56 55.4
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 2.0e-09 67.0 57 56.1
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 2.6e-09 66.6 56 50.0
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 2.6e-09 66.6 56 50.0
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 2.6e-09 66.6 57 52.6
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 2.6e-09 66.6 82 39.0
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 3.4e-09 66.2 57 57.9
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 3.4e-09 66.2 56 50.0
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 4.4e-09 65.9 58 50.0
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 4.4e-09 65.9 63 52.4
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 4.4e-09 65.9 56 55.4
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 7.6e-09 65.1 82 40.2
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 7.6e-09 65.1 92 33.7
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 9.9e-09 64.7 43 62.8
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 1.3e-08 64.3 48 56.2
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 1.3e-08 64.3 49 53.1
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 1.7e-08 63.9 49 55.1
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 2.2e-08 63.5 82 40.2
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 2.2e-08 63.5 48 56.2
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 2.9e-08 63.2 82 39.0
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 2.9e-08 63.2 57 47.4
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 3.8e-08 62.8 49 51.0
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 3.8e-08 62.8 82 39.0
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 3.8e-08 62.8 57 54.4
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 4.9e-08 62.4 50 54.0
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 4.9e-08 62.4 56 46.4
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 6.4e-08 62.0 49 49.0
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 8.4e-08 61.6 49 49.0
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 8.4e-08 61.6 53 47.2
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.1e-07 61.2 59 42.4
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.4e-07 60.8 49 51.0
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 1.9e-07 60.5 134 32.8
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 1.9e-07 60.5 57 52.6
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 2.4e-07 60.1 74 39.2
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 4.2e-07 59.3 81 42.0
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 5.4e-07 58.9 57 47.4
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 5.4e-07 58.9 56 46.4
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 5.4e-07 58.9 56 46.4
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 7.1e-07 58.5 57 45.6
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.6e-06 57.4 44 56.8
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 1.6e-06 57.4 44 56.8
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.6e-06 57.4 49 46.9
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 2.1e-06 57.0 45 51.1
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 2.1e-06 57.0 49 49.0
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 2.1e-06 57.0 60 41.7
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 2.7e-06 56.6 61 39.3
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 3.5e-06 56.2 50 46.0
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 7.8e-06 55.1 56 42.9


User provided reference genes

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