Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 6.6e-107 391.0 236 100.0
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 2.0e-79 299.7 230 78.7
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 1.7e-17 94.0 215 31.2
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 5.4e-16 89.0 226 30.1
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 4.6e-15 85.9 105 41.0
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 6.0e-15 85.5 94 43.6
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.0e-14 84.7 94 43.6
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.0e-14 84.7 94 43.6
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 1.0e-14 84.7 198 33.3
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 1.0e-14 84.7 215 31.2
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.7e-14 84.0 108 42.6
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 2.3e-14 83.6 197 32.0
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 2.3e-14 83.6 94 46.8
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 2.3e-14 83.6 99 41.4
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 3.0e-14 83.2 200 30.5
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 3.0e-14 83.2 200 30.5
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 5.1e-14 82.4 94 44.7
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 6.6e-14 82.0 213 30.0
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 6.6e-14 82.0 200 30.5
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 8.6e-14 81.6 200 31.0
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 8.6e-14 81.6 104 44.2
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 8.6e-14 81.6 200 31.5
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 8.6e-14 81.6 101 39.6
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 8.6e-14 81.6 198 29.3
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 1.1e-13 81.3 203 28.1
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 1.5e-13 80.9 94 43.6
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.5e-13 80.9 218 28.4
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 1.9e-13 80.5 93 43.0
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.5e-13 80.1 218 27.5
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 2.5e-13 80.1 94 41.5
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 2.5e-13 80.1 219 27.9
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 2.5e-13 80.1 93 43.0
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 3.3e-13 79.7 96 41.7
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.3e-13 79.7 221 26.7
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 3.3e-13 79.7 213 30.0
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 3.3e-13 79.7 200 29.0
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.3e-13 79.3 221 26.7
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 4.3e-13 79.3 215 26.5
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 4.3e-13 79.3 198 28.3
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 5.6e-13 79.0 198 28.8
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 5.6e-13 79.0 198 27.8
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 5.6e-13 79.0 219 26.5
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 5.6e-13 79.0 100 41.0
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 5.6e-13 79.0 114 35.1
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 7.3e-13 78.6 94 42.6
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 7.3e-13 78.6 94 42.6
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 7.3e-13 78.6 198 28.8
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 7.3e-13 78.6 220 28.2
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 9.5e-13 78.2 96 44.8
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 9.5e-13 78.2 215 27.9
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 1.2e-12 77.8 100 39.0
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.2e-12 77.8 199 32.2
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 1.2e-12 77.8 200 28.0
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 1.6e-12 77.4 215 27.0
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 1.6e-12 77.4 219 26.0
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 1.6e-12 77.4 219 26.5
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.6e-12 77.4 107 37.4
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 2.1e-12 77.0 217 29.0
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 2.8e-12 76.6 197 27.9
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 2.8e-12 76.6 219 26.9
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 2.8e-12 76.6 200 29.5
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 3.6e-12 76.3 211 28.0
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 3.6e-12 76.3 209 27.3
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 3.6e-12 76.3 199 30.2
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 4.7e-12 75.9 202 28.7
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 4.7e-12 75.9 199 29.6
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 4.7e-12 75.9 206 28.6
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 4.7e-12 75.9 197 29.9
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 4.7e-12 75.9 198 30.3
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 4.7e-12 75.9 200 29.5
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 6.2e-12 75.5 221 27.6
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 6.2e-12 75.5 206 29.1
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 6.2e-12 75.5 94 40.4
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 6.2e-12 75.5 198 27.8
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 6.2e-12 75.5 198 28.3
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 8.1e-12 75.1 100 41.0
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 8.1e-12 75.1 95 41.1
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 8.1e-12 75.1 201 28.4
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 8.1e-12 75.1 200 28.0
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.1e-11 74.7 197 29.4
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.1e-11 74.7 200 29.0
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.1e-11 74.7 216 27.8
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 1.8e-11 73.9 238 27.3
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 1.8e-11 73.9 194 29.4
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 2.3e-11 73.6 238 27.3
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.3e-11 73.6 96 42.7
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 2.3e-11 73.6 197 28.4
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 2.3e-11 73.6 216 27.8
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 2.3e-11 73.6 206 28.2
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 2.3e-11 73.6 197 28.9
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 2.3e-11 73.6 204 27.9
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 3.1e-11 73.2 197 28.9
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 5.2e-11 72.4 221 25.3
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 5.2e-11 72.4 213 29.6
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 5.2e-11 72.4 216 27.8
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 6.8e-11 72.0 102 39.2
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 8.9e-11 71.6 96 38.5
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 8.9e-11 71.6 221 25.3
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 8.9e-11 71.6 203 28.1
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 8.9e-11 71.6 193 28.5
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 8.9e-11 71.6 215 27.4
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 8.9e-11 71.6 215 27.0
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.2e-10 71.2 229 27.5
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 1.2e-10 71.2 223 28.3
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 1.2e-10 71.2 205 28.3
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.2e-10 71.2 94 38.3
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 1.5e-10 70.9 229 27.5
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 2.0e-10 70.5 197 26.9
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 2.6e-10 70.1 200 29.0
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 2.6e-10 70.1 102 41.2
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 2.6e-10 70.1 100 37.0
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 3.4e-10 69.7 199 27.1
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 3.4e-10 69.7 199 27.1
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 4.4e-10 69.3 215 27.9
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 5.8e-10 68.9 224 27.2
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 5.8e-10 68.9 100 41.0
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 5.8e-10 68.9 94 43.6
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 7.6e-10 68.6 205 27.8
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 7.6e-10 68.6 94 37.2
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 7.6e-10 68.6 231 26.8
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 7.6e-10 68.6 198 27.3
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 9.9e-10 68.2 204 26.5
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 9.9e-10 68.2 94 42.6
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.3e-09 67.8 96 40.6
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.3e-09 67.8 223 28.3
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 1.3e-09 67.8 100 36.0
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 2.2e-09 67.0 201 28.9
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 2.2e-09 67.0 201 28.9
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 2.9e-09 66.6 222 28.4
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 2.9e-09 66.6 185 29.7
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 3.7e-09 66.2 110 37.3
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 4.9e-09 65.9 222 24.8
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 4.9e-09 65.9 99 33.3
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 4.9e-09 65.9 197 26.4
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 6.4e-09 65.5 199 26.1
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 8.4e-09 65.1 211 24.6
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 8.4e-09 65.1 217 24.4
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.1e-08 64.7 199 26.1
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.1e-08 64.7 199 26.1
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.1e-08 64.7 223 23.8
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 1.1e-08 64.7 184 27.7
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 1.4e-08 64.3 202 27.7
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.9e-08 63.9 222 26.1
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.4e-08 63.5 200 26.0
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 2.4e-08 63.5 197 26.9
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 3.2e-08 63.2 95 36.8
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 7.1e-08 62.0 198 26.8
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 9.2e-08 61.6 85 38.8
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.6e-07 60.8 209 25.4
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.6e-07 60.8 119 32.8
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 2.1e-07 60.5 204 27.5
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.1e-07 60.5 204 27.5
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 4.6e-07 59.3 217 23.5
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 3.0e-06 56.6 226 23.5
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 5.1e-06 55.8 108 32.4
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 8.6e-06 55.1 226 23.5


User provided reference genes

Program Settings