Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 0.0e+00 1299.3 745 100.0
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 8.2e-111 405.6 770 34.8
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 1.0e-92 345.5 766 32.4
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 9.5e-91 339.0 754 32.0
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 8.0e-82 309.3 765 29.9
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 2.2e-79 301.2 756 29.9
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 2.9e-79 300.8 772 29.7
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 1.9e-78 298.1 763 29.0
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 1.9e-78 298.1 758 29.2
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 7.0e-78 296.2 766 29.5
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 1.2e-77 295.4 752 29.0
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 2.0e-77 294.7 760 29.2
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 2.7e-77 294.3 757 29.5
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.7e-77 294.3 748 29.8
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 2.7e-77 294.3 760 29.6
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 4.6e-77 293.5 760 29.3
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 4.6e-77 293.5 752 29.8
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 7.8e-77 292.7 771 29.4
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 1.0e-76 292.4 760 29.6
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 1.7e-76 291.6 739 30.0
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.7e-76 291.6 760 28.8
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 1.7e-76 291.6 770 30.1
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 1.7e-76 291.6 761 29.8
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 2.3e-76 291.2 760 28.8
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 2.3e-76 291.2 757 28.8
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 2.3e-76 291.2 761 29.7
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 3.9e-76 290.4 759 29.4
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 3.9e-76 290.4 760 28.8
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 3.9e-76 290.4 770 30.0
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 3.9e-76 290.4 749 29.5
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 5.0e-76 290.0 762 29.3
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 6.6e-76 289.7 760 28.8
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 8.6e-76 289.3 754 28.8
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 1.5e-75 288.5 760 29.1
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 5.6e-75 286.6 756 28.8
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 5.6e-75 286.6 759 28.6
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 7.3e-75 286.2 756 28.8
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 7.3e-75 286.2 756 29.2
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 7.3e-75 286.2 759 28.5
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 9.5e-75 285.8 761 28.5
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 9.5e-75 285.8 753 28.7
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 1.2e-74 285.4 756 29.4
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 1.2e-74 285.4 756 28.8
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 1.2e-74 285.4 756 29.4
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 1.2e-74 285.4 752 28.1
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 2.1e-74 284.6 756 29.1
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 2.1e-74 284.6 755 28.5
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 2.8e-74 284.3 761 30.4
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 3.6e-74 283.9 763 28.8
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 4.7e-74 283.5 759 28.5
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 4.7e-74 283.5 752 29.1
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 4.7e-74 283.5 752 29.4
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 4.7e-74 283.5 768 28.8
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 4.7e-74 283.5 758 28.6
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 4.7e-74 283.5 755 28.5
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 8.0e-74 282.7 762 28.9
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 2.3e-73 281.2 754 29.0
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.3e-73 281.2 754 29.4
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 3.1e-73 280.8 763 28.6
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 3.1e-73 280.8 762 28.1
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 4.0e-73 280.4 764 28.3
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 5.2e-73 280.0 762 28.9
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 5.2e-73 280.0 749 28.4
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 2.0e-72 278.1 757 29.3
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 2.6e-72 277.7 752 29.0
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 2.6e-72 277.7 737 29.4
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 4.4e-72 276.9 755 28.6
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 4.4e-72 276.9 742 28.6
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 1.7e-71 275.0 762 29.0
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 2.9e-71 274.2 769 30.3
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.9e-71 274.2 754 28.4
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 3.7e-71 273.9 762 28.0
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 8.3e-71 272.7 764 27.6
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 8.3e-71 272.7 754 28.5
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 8.3e-71 272.7 757 28.5
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 8.3e-71 272.7 758 28.5
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 1.1e-70 272.3 751 29.4
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 1.4e-70 271.9 776 27.2
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 2.4e-70 271.2 754 29.0
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 4.1e-70 270.4 754 28.0
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 2.7e-69 267.7 752 27.9
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 6.0e-69 266.5 757 28.0
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 1.0e-68 265.8 759 27.9
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 1.3e-68 265.4 759 28.6
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 1.7e-68 265.0 789 27.4
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 3.0e-68 264.2 766 27.5
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 5.1e-68 263.5 752 28.5
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 6.6e-68 263.1 743 28.0
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 1.5e-67 261.9 737 28.8
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 3.3e-67 260.8 768 28.3
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 7.3e-67 259.6 605 31.7
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 4.7e-66 256.9 758 28.0
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 5.2e-65 253.4 754 28.1
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 6.8e-65 253.1 754 28.2
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 1.2e-64 252.3 737 27.5
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 1.5e-64 251.9 761 27.2
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 1.3e-63 248.8 760 26.7
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 4.9e-63 246.9 768 25.8
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 3.2e-62 244.2 762 26.9
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 1.1e-59 235.7 768 27.5
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 1.8e-57 228.4 816 26.6
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 2.4e-57 228.0 758 26.1
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 6.4e-55 219.9 734 26.6
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 3.5e-53 214.2 415 33.0
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 2.5e-51 208.0 198 54.0
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 8.1e-50 203.0 229 46.7
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 1.7e-47 195.3 411 32.4
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 1.4e-46 192.2 494 29.6
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.5e-43 182.2 605 26.8
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 1.6e-42 178.7 642 25.5
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 6.4e-39 166.8 554 25.8
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 4.9e-31 140.6 197 43.7
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 7.6e-24 116.7 199 34.7
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 1.9e-22 112.1 190 33.7
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 5.5e-22 110.5 269 28.3
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.2e-21 109.4 104 52.9
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 3.7e-18 97.8 89 52.8
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 6.1e-13 80.5 82 51.2
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 5.1e-12 77.4 79 45.6
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 6.7e-12 77.0 250 24.0
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 1.7e-10 72.4 143 31.5
AagrBONN_evm.TU.Sc2ySwM_228.892 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.5e-08 65.9 130 31.5
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 1.5e-08 65.9 62 51.6


User provided reference genes

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