Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g30695 Chara braunii HOM05D005776 ORTHO05D007333 3.1e-210 734.9 394 100.0
SMO329G0044 Selaginella moellendorffii HOM05D005776 ORTHO05D007333 3.9e-51 206.5 172 57.6
AagrBONN_evm.TU.Sc2ySwM_344.5430 Anthoceros agrestis HOM05D005776 ORTHO05D007333 8.6e-51 205.3 210 50.0
Mapoly0011s0067 Marchantia polymorpha HOM05D005776 ORTHO05D007333 9.5e-50 201.8 228 48.2
Potri.007G034400 Populus trichocarpa HOM05D005776 ORTHO05D007333 1.1e-48 198.4 215 51.6
Carub.0007s0339 Capsella rubella HOM05D005776 ORTHO05D007333 4.0e-48 196.4 211 52.1
Hma1.2p1_0739F.1_g211300 Hydrangea macrophylla HOM05D005776 ORTHO05D007333 4.0e-48 196.4 172 55.8
Pp3c22_350 Physcomitrium patens HOM05D005776 ORTHO05D007333 4.0e-48 196.4 172 57.6
HanXRQChr12g0378471 Helianthus annuus HOM05D005776 ORTHO05D007333 5.2e-48 196.1 192 54.2
PGR102G0103 Punica granatum HOM05D005776 ORTHO05D007333 5.2e-48 196.1 185 55.1
THA.LOC104804218 Tarenaya hassleriana HOM05D005776 ORTHO05D007333 1.2e-47 194.9 221 48.9
MSTRG.3404 Avicennia marina HOM05D005776 ORTHO05D007333 1.5e-47 194.5 172 54.7
CSS0016523 Camellia sinensis var. sinensis HOM05D005776 ORTHO05D007333 2.0e-47 194.1 184 53.3
CSS0036517 Camellia sinensis var. sinensis HOM05D005776 ORTHO05D007333 2.0e-47 194.1 184 53.3
Lj4A136T80 Lonicera japonica HOM05D005776 ORTHO05D007333 2.0e-47 194.1 169 57.4
AL7G14000 Arabidopsis lyrata HOM05D005776 ORTHO05D007333 2.6e-47 193.7 219 50.2
Lj2g0005971 Lotus japonicus HOM05D005776 ORTHO05D007333 2.6e-47 193.7 191 52.4
SGA_v2.0_scaffold10G05128 Striga asiatica HOM05D005776 ORTHO05D007333 2.6e-47 193.7 176 53.4
arahy.Tifrunner.gnm1.ann1.41BUH4 Arachis hypogaea HOM05D005776 ORTHO05D007333 3.4e-47 193.4 200 51.5
MBI16_g29183_MAGBIO Magnolia biondii HOM05D005776 ORTHO05D007333 5.8e-47 192.6 199 51.8
Cc07_g19620 Coffea canephora HOM05D005776 ORTHO05D007333 9.9e-47 191.8 177 55.9
Rhsim10G0126200 Rhododendron simsii HOM05D005776 ORTHO05D007333 9.9e-47 191.8 172 57.6
Sp7g34590 Schrenkiella parvula HOM05D005776 ORTHO05D007333 9.9e-47 191.8 212 51.4
Nitab4.5_0000984g0010 Nicotiana tabacum HOM05D005776 ORTHO05D007333 1.3e-46 191.4 188 54.3
Oeu032924.1 Olea europaea HOM05D005776 ORTHO05D007333 1.3e-46 191.4 214 47.7
Peaxi162Scf00235g00723 Petunia axillaris HOM05D005776 ORTHO05D007333 1.3e-46 191.4 177 54.8
VMungo1215G2372 Vigna mungo HOM05D005776 ORTHO05D007333 1.3e-46 191.4 172 55.8
C01p02180 Brassica napus HOM05D005776 ORTHO05D007333 1.7e-46 191.0 173 57.2
BolC1t00210H Brassica oleracea HOM05D005776 ORTHO05D007333 1.7e-46 191.0 173 57.2
Lalb_Chr09g0333671 Lupinus albus HOM05D005776 ORTHO05D007333 2.2e-46 190.7 184 53.3
PSO541G0480 Papaver somniferum HOM05D001143 ORTHO05D007333 2.2e-46 190.7 186 52.2
QL06p044240 Quercus lobata HOM05D005776 ORTHO05D007333 2.2e-46 190.7 172 56.4
Sabra07G0030000 Salix brachista HOM05D005776 ORTHO05D007333 2.2e-46 190.7 215 49.3
GSVIVG01003777001 Vitis vinifera HOM05D005776 ORTHO05D007333 2.2e-46 190.7 172 54.7
Ciclev10026303m.g Citrus clementina HOM05D005776 ORTHO05D007333 2.9e-46 190.3 172 55.8
Medtr5g018580 Medicago truncatula HOM05D005776 ORTHO05D007333 2.9e-46 190.3 186 53.2
Nitab4.5_0002826g0010 Nicotiana tabacum HOM05D005776 ORTHO05D007333 2.9e-46 190.3 171 55.6
TWI09G1011 Tripterygium wilfordii HOM05D005776 ORTHO05D007333 2.9e-46 190.3 184 53.3
Aa31LG6G13780 Aethionema arabicum HOM05D005776 ORTHO05D007333 3.8e-46 189.9 173 57.8
Cfa004232 Carpinus fangiana HOM05D005776 ORTHO05D007333 3.8e-46 189.9 198 50.5
Actinidia12087 Actinidia chinensis HOM05D005776 ORTHO05D007333 4.9e-46 189.5 172 55.2
arahy.Tifrunner.gnm1.ann1.TE9NQ7 Arachis hypogaea HOM05D005776 ORTHO05D007333 4.9e-46 189.5 178 53.9
EL10Ac2g03922 Beta vulgaris HOM05D005776 ORTHO05D007333 4.9e-46 189.5 185 53.5
A01p02000 Brassica napus HOM05D005776 ORTHO05D007333 4.9e-46 189.5 225 48.9
BraA01t00188Z Brassica rapa HOM05D005776 ORTHO05D007333 4.9e-46 189.5 225 48.9
Haze_15167 Corylus avellana HOM05D005776 ORTHO05D007333 4.9e-46 189.5 198 50.5
Gohir.A03G118800 Gossypium hirsutum HOM05D005776 ORTHO05D007333 4.9e-46 189.5 205 48.8
Lsat_1_v5_gn_3_94020 Lactuca sativa HOM05D005776 ORTHO05D007333 4.9e-46 189.5 173 57.2
Manes.12G094700 Manihot esculenta HOM05D005776 ORTHO05D007333 4.9e-46 189.5 172 54.7
SalBow1G0426 Salvia bowleyana HOM05D005776 ORTHO05D007333 4.9e-46 189.5 177 53.7
SalBow1G6751 Salvia bowleyana HOM05D005776 ORTHO05D007333 4.9e-46 189.5 177 53.7
AT4G37200 Arabidopsis thaliana HOM05D005776 ORTHO05D007333 6.4e-46 189.1 173 56.6
Gohir.D02G141600 Gossypium hirsutum HOM05D005776 ORTHO05D007333 6.4e-46 189.1 205 48.8
Gorai.005G159700 Gossypium raimondii HOM05D005776 ORTHO05D007333 6.4e-46 189.1 205 48.8
CiPaw.01G029000 Carya illinoinensis HOM05D005776 ORTHO05D007333 8.4e-46 188.7 175 54.9
Ca_24808_v3 Cicer arietinum L. HOM05D005776 ORTHO05D007333 1.1e-45 188.3 186 52.2
Eucgr.H01941 Eucalyptus grandis HOM05D005776 ORTHO05D007333 1.1e-45 188.3 230 45.7
Thhalv10026051m.g Eutrema salsugineum HOM05D005776 ORTHO05D007333 1.1e-45 188.3 218 50.0
Glyma.01G182500 Glycine max HOM05D005776 ORTHO05D007333 1.1e-45 188.3 184 53.8
PSO675G1056 Papaver somniferum HOM05D005776 ORTHO05D007333 1.1e-45 188.3 186 51.1
Cfa017515 Carpinus fangiana HOM05D005776 ORTHO05D007333 1.4e-45 188.0 209 48.3
ECA246G4011 Erigeron canadensis HOM05D005776 ORTHO05D007333 1.9e-45 187.6 193 52.8
Migut.K00840 Erythranthe guttata HOM05D005776 ORTHO05D007333 1.9e-45 187.6 174 56.3
Phvul.002G023500 Phaseolus vulgaris HOM05D005776 ORTHO05D007333 1.9e-45 187.6 172 55.2
FAN19G1930 Fragaria x ananassa HOM05D005776 ORTHO05D007333 2.4e-45 187.2 173 54.3
Sc15g0005670 Simmondsia chinensis HOM05D005776 ORTHO05D007333 2.4e-45 187.2 159 58.5
Ah.10g034500 Amaranthus hybridus HOM05D000575 ORTHO05D004448 3.2e-45 186.8 184 53.3
COL.COLO4_07276 Corchorus olitorius HOM05D005776 ORTHO05D007333 3.2e-45 186.8 171 53.8
FvH4_1g14520 Fragaria vesca HOM05D005776 ORTHO05D007333 3.2e-45 186.8 173 54.3
FAN23G2656 Fragaria x ananassa HOM05D005776 ORTHO05D007333 3.2e-45 186.8 173 54.3
FAN28G0587 Fragaria x ananassa HOM05D005776 ORTHO05D007333 3.2e-45 186.8 173 54.3
vmacro11025 Vaccinium macrocarpon HOM05D005776 ORTHO05D007333 3.2e-45 186.8 184 51.6
ATR0733G088 Amborella trichopoda HOM05D005776 ORTHO05D007333 4.2e-45 186.4 172 54.7
CAN.G337.59 Capsicum annuum HOM05D005776 ORTHO05D007333 4.2e-45 186.4 213 49.3
AUR62009176 Chenopodium quinoa HOM05D005776 ORTHO05D007333 4.2e-45 186.4 184 52.2
MD02G1158600 Malus domestica HOM05D005776 ORTHO05D007333 4.2e-45 186.4 185 53.0
Sed0000268 Sechium edule HOM05D005776 ORTHO05D007333 4.2e-45 186.4 197 52.3
HPP92_012224 Vanilla planifolia HOM05D005776 ORTHO05D007333 4.2e-45 186.4 173 54.9
Aqoxy6G00958 Aquilegia oxysepala HOM05D005776 ORTHO05D007333 5.4e-45 186.0 196 51.0
CANSAT25G0990 Cannabis sativa HOM05D005776 ORTHO05D007333 5.4e-45 186.0 176 52.3
CsaV3_6G042720 Cucumis sativus L. HOM05D005776 ORTHO05D007333 5.4e-45 186.0 173 55.5
FAN26G3400 Fragaria x ananassa HOM05D005776 ORTHO05D007333 5.4e-45 186.0 173 53.8
unitig_578.g16073 Utricularia gibba HOM05D005776 ORTHO05D007333 5.4e-45 186.0 172 54.1
Zm00001eb213990 Zea mays HOM05D005776 ORTHO05D007333 5.4e-45 186.0 218 46.3
Cpa.g.sc15.62 Carica papaya HOM05D005776 ORTHO05D007333 7.1e-45 185.7 220 46.4
COL.COLO4_13087 Corchorus olitorius HOM05D005776 ORTHO05D007333 7.1e-45 185.7 171 53.2
Duzib251G0151 Durio zibethinus HOM05D005776 ORTHO05D007333 7.1e-45 185.7 179 53.1
Psat2g163800 Pisum sativum HOM05D005776 ORTHO05D007333 7.1e-45 185.7 186 52.2
Hund05302 Selenicereus undatus HOM05D005776 ORTHO05D007333 7.1e-45 185.7 172 55.2
Solyc07g064940.3 Solanum lycopersicum HOM05D005776 ORTHO05D007333 7.1e-45 185.7 215 47.9
Sopen07g033140 Solanum pennellii HOM05D005776 ORTHO05D007333 7.1e-45 185.7 215 47.9
TAR628G1436 Trochodendron aralioides HOM05D005776 ORTHO05D007333 7.1e-45 185.7 172 55.2
Os03g0767500 Oryza sativa ssp. japonica HOM05D005776 ORTHO05D007333 1.2e-44 184.9 204 48.5
RcHm_v2.0_Chr2g0103261 Rosa chinensis HOM05D005776 ORTHO05D007333 1.2e-44 184.9 201 47.8
PGSC0003DMG400022206 Solanum tuberosum HOM05D005776 ORTHO05D007333 1.2e-44 184.9 215 47.4
Thecc.02G289200 Theobroma cacao HOM05D005776 ORTHO05D007333 1.2e-44 184.9 179 51.4
ClCG01G016400 Citrullus lanatus HOM05D005776 ORTHO05D007333 1.6e-44 184.5 214 47.2
AUR62022050 Chenopodium quinoa HOM05D005776 ORTHO05D007333 2.7e-44 183.7 213 47.4
TPR.G29855 Trifolium pratense HOM05D005776 ORTHO05D007333 2.7e-44 183.7 187 51.3
CDE02G0814 Ceratophyllum demersum HOM05D005776 ORTHO05D007333 3.5e-44 183.3 173 54.3
MD15G1273400 Malus domestica HOM05D005776 ORTHO05D007333 6.0e-44 182.6 192 51.0
Prupe.7G145200 Prunus persica HOM05D005776 ORTHO05D007333 7.8e-44 182.2 212 47.2
MELO3C007510.2 Cucumis melo HOM05D005776 ORTHO05D007333 2.3e-43 180.6 179 54.7
Glyma.11G060800 Glycine max HOM05D005776 ORTHO05D007333 6.9e-40 169.1 117 64.1
Nn6g32162 Nelumbo nucifera HOM05D005776 ORTHO05D007333 5.8e-39 166.0 132 59.8
Duzib268G1673 Durio zibethinus HOM05D005776 ORTHO05D007333 4.9e-38 162.9 164 48.8
Gohir.A03G118600 Gossypium hirsutum HOM05D005776 ORTHO05D007333 3.2e-37 160.2 131 57.3
MD17G1248400 Malus domestica HOM05D005776 ORTHO05D007333 4.2e-37 159.8 157 53.5
BcaNung03515 Brassica carinata HOM05D005776 ORTHO05D007333 7.1e-37 159.1 162 53.1
MCO15G478 Micromonas commoda HOM05D005776 ORTHO05D007333 1.9e-34 151.0 182 45.6
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 3.3e-34 150.2 184 44.6
TAR625G0250 Trochodendron aralioides HOM05D005776 ORTHO05D007333 1.5e-31 141.4 126 56.3
Gorai.005G159300 Gossypium raimondii HOM05D005776 ORTHO05D007333 4.9e-30 136.3 116 56.0
PRCOL_00004254 Prasinoderma coloniale HOM05D005776 ORTHO05D007333 1.1e-29 135.2 177 42.4
Atru.chr3.470 Acer truncatum HOM05D005776 ORTHO05D007333 9.6e-26 122.1 172 41.9
CARHR245310 Cardamine hirsuta HOM05D005776 ORTHO05D007333 1.5e-23 114.8 117 53.8
CDE01G0348 Ceratophyllum demersum HOM05D001852 ORTHO05D001989 2.9e-22 110.5 102 54.9
CSS0005566 Camellia sinensis var. sinensis HOM05D005776 ORTHO05D007333 1.3e-19 101.7 183 37.2
BolC1t00269H Brassica oleracea HOM05D005776 ORTHO05D007333 4.3e-18 96.7 70 64.3
Gohir.D02G142060 Gossypium hirsutum HOM05D005776 ORTHO05D007333 2.1e-17 94.4 158 34.2
CARHR245300 Cardamine hirsuta HOM05D005776 ORTHO05D007333 2.4e-16 90.9 116 44.0
BcaNung00756 Brassica carinata HOM05D005776 ORTHO05D007333 7.6e-15 85.9 66 62.1
C01p02790 Brassica napus HOM05D005776 ORTHO05D007333 7.6e-15 85.9 66 62.1
Hma1.2p1_0739F.1_g211290 Hydrangea macrophylla HOM05D005776 ORTHO05D007333 7.6e-15 85.9 75 50.7
MELO3C026070.2 Cucumis melo HOM05D005776 ORTHO05D007333 3.2e-13 80.5 134 38.8
C01p10450 Brassica napus HOM05D005776 ORTHO05D007333 1.8e-08 64.7 73 46.6
Lsat_1_v5_gn_5_160121 Lactuca sativa HOM05D005776 ORTHO05D007333 1.5e-07 61.6 117 36.8
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 5.9e-07 59.7 82 32.9
Zm00001eb226480 Zea mays HOM05D001594 ORTHO05D002862 5.9e-07 59.7 36 61.1
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 7.7e-07 59.3 82 32.9
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 1.3e-06 58.5 98 33.7
Mapoly0072s0021 Marchantia polymorpha HOM05D006792 ORTHO05D008489 1.7e-06 58.2 88 31.8
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 2.2e-06 57.8 76 32.9
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 2.9e-06 57.4 88 35.2
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 2.9e-06 57.4 118 28.8
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 3.8e-06 57.0 114 28.9
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 3.8e-06 57.0 73 34.2
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 5.0e-06 56.6 74 35.1
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 5.0e-06 56.6 86 33.7
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 6.5e-06 56.2 82 32.9


User provided reference genes

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