Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 8.3e-108 393.7 190 100.0
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 4.9e-92 341.3 185 84.9
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 1.8e-91 339.3 183 84.2
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 4.1e-91 338.2 183 83.6
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 5.4e-91 337.8 187 81.8
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 9.2e-91 337.0 183 82.5
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 9.2e-91 337.0 183 83.1
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-90 336.7 183 83.6
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-90 336.7 183 83.6
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-90 336.7 183 83.6
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 1.2e-90 336.7 183 82.5
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 1.6e-90 336.3 183 83.1
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 1.6e-90 336.3 187 81.8
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 2.0e-90 335.9 183 83.1
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 2.7e-90 335.5 187 80.7
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.7e-90 335.5 187 81.3
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.7e-90 335.5 187 81.3
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 3.5e-90 335.1 183 82.5
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 3.5e-90 335.1 183 82.5
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 4.6e-90 334.7 188 81.4
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 4.6e-90 334.7 183 82.5
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 4.6e-90 334.7 183 83.1
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 4.6e-90 334.7 183 83.1
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 5.9e-90 334.3 187 80.2
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 5.9e-90 334.3 183 82.0
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 7.8e-90 334.0 187 80.7
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.0e-89 333.6 187 79.1
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 1.0e-89 333.6 187 80.7
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 1.0e-89 333.6 183 82.0
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 1.3e-89 333.2 183 81.4
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 1.3e-89 333.2 187 82.4
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 1.3e-89 333.2 182 84.6
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 1.3e-89 333.2 187 80.2
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 1.7e-89 332.8 183 82.0
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.7e-89 332.8 183 82.0
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.7e-89 332.8 186 79.6
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 1.7e-89 332.8 185 81.1
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.7e-89 332.8 183 82.0
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 2.3e-89 332.4 187 80.7
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 2.3e-89 332.4 186 82.8
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 2.3e-89 332.4 183 80.9
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 2.9e-89 332.0 187 79.7
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 2.9e-89 332.0 187 79.7
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 2.9e-89 332.0 187 80.2
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 2.9e-89 332.0 183 81.4
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 2.9e-89 332.0 187 79.7
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 2.9e-89 332.0 190 79.5
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 2.9e-89 332.0 187 80.2
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 3.9e-89 331.6 187 80.2
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 3.9e-89 331.6 187 80.7
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 5.0e-89 331.3 187 79.7
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 6.6e-89 330.9 183 79.8
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 6.6e-89 330.9 183 79.8
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 6.6e-89 330.9 183 80.9
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 6.6e-89 330.9 183 80.3
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 6.6e-89 330.9 183 80.3
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 6.6e-89 330.9 187 81.8
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 6.6e-89 330.9 186 79.6
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 8.6e-89 330.5 187 79.1
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 1.1e-88 330.1 186 79.6
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.1e-88 330.1 183 81.4
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.1e-88 330.1 187 78.1
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 1.5e-88 329.7 183 80.3
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 1.5e-88 329.7 183 80.3
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 1.5e-88 329.7 183 80.3
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 1.5e-88 329.7 183 80.9
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.5e-88 329.7 183 80.9
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.5e-88 329.7 183 80.9
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.5e-88 329.7 183 80.9
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.5e-88 329.7 183 80.9
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 1.5e-88 329.7 183 80.3
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 1.5e-88 329.7 187 78.6
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 1.5e-88 329.7 187 80.2
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 1.5e-88 329.7 183 80.9
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 1.9e-88 329.3 183 80.9
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 1.9e-88 329.3 183 79.8
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 1.9e-88 329.3 186 79.6
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 1.9e-88 329.3 183 80.3
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 1.9e-88 329.3 183 79.8
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 2.5e-88 328.9 183 80.3
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 2.5e-88 328.9 187 78.1
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 2.5e-88 328.9 183 80.3
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 2.5e-88 328.9 183 80.3
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 2.5e-88 328.9 187 78.1
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 2.5e-88 328.9 183 80.9
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 2.5e-88 328.9 183 79.8
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 2.5e-88 328.9 183 80.9
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 2.5e-88 328.9 183 80.3
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 2.5e-88 328.9 183 79.8
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 2.5e-88 328.9 183 80.3
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 3.3e-88 328.6 183 79.8
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 3.3e-88 328.6 183 80.9
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 3.3e-88 328.6 183 80.9
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 3.3e-88 328.6 183 80.9
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 3.3e-88 328.6 183 80.9
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 3.3e-88 328.6 190 78.9
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 4.3e-88 328.2 183 80.9
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 4.3e-88 328.2 187 79.1
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 4.3e-88 328.2 187 79.1
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 5.6e-88 327.8 187 78.1
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 7.3e-88 327.4 183 80.9
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 7.3e-88 327.4 183 79.8
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 7.3e-88 327.4 183 79.8
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 7.3e-88 327.4 183 79.8
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 7.3e-88 327.4 183 79.8
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 9.5e-88 327.0 187 78.1
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 9.5e-88 327.0 187 78.1
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 9.5e-88 327.0 187 78.1
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 9.5e-88 327.0 186 79.0
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 9.5e-88 327.0 183 80.3
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 1.2e-87 326.6 183 79.2
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 1.6e-87 326.2 183 80.3
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 1.6e-87 326.2 183 78.1
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 1.6e-87 326.2 188 77.7
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.6e-87 326.2 195 77.4
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 2.1e-87 325.9 183 79.8
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 2.1e-87 325.9 183 79.8
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 2.1e-87 325.9 189 79.9
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 2.8e-87 325.5 183 79.2
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 3.6e-87 325.1 183 78.7
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 6.1e-87 324.3 187 77.0
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 6.1e-87 324.3 187 78.1
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 8.0e-87 323.9 183 78.1
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 1.0e-86 323.6 187 76.5
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 2.3e-86 322.4 183 78.1
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 2.3e-86 322.4 183 79.8
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 3.1e-86 322.0 191 77.0
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 5.2e-86 321.2 187 77.0
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 6.8e-86 320.9 207 72.0
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 8.9e-86 320.5 183 78.1
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 8.9e-86 320.5 183 78.1
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 1.2e-85 320.1 183 77.6
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 1.5e-85 319.7 182 78.0
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 1.5e-85 319.7 182 78.0
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 2.6e-85 318.9 183 78.1
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 3.4e-85 318.5 185 77.3
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 9.8e-85 317.0 182 80.8
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.3e-81 305.8 191 75.4
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 1.6e-79 299.7 253 58.1
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 2.3e-78 295.8 191 70.2
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.4e-75 286.6 163 77.3
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.7e-73 279.6 190 70.5
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 1.5e-72 276.6 152 79.6
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 7.1e-67 257.7 140 82.1
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 9.2e-67 257.3 141 81.6
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 2.3e-65 252.7 143 77.6
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 4.7e-63 245.0 139 77.7
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 9.9e-61 237.3 130 79.2
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.2e-60 236.1 186 65.6
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 1.9e-59 233.0 187 63.6
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 7.1e-59 231.1 189 55.0
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 2.7e-58 229.2 128 76.6
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 6.6e-57 224.6 136 71.3
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.1e-56 223.8 161 65.8
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 2.5e-56 222.6 188 54.8
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 5.6e-56 221.5 149 67.1
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 1.1e-48 197.2 166 60.8
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 1.3e-44 183.7 157 60.5
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 9.6e-40 167.5 90 80.0
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.6e-37 159.5 90 77.8
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.2e-36 156.4 103 68.0
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 2.9e-36 156.0 125 57.6
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.8e-36 155.6 87 77.0
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 4.9e-36 155.2 90 75.6
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 6.5e-36 154.8 125 57.6
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.5e-35 152.9 87 77.0
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.2e-35 152.1 87 75.9
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.2e-35 152.1 87 75.9
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.8e-33 146.7 125 56.8
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 1.3e-31 140.6 93 72.0
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 2.8e-31 139.4 94 70.2
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.7e-31 139.0 157 45.9
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.1e-30 136.0 79 75.9
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 2.2e-28 129.8 70 84.3
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 6.1e-26 121.7 69 66.7
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.4e-21 105.9 100 48.0
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.4e-21 105.9 100 48.0
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.4e-21 105.9 100 48.0
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.4e-21 105.9 100 48.0
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.4e-21 105.9 100 48.0
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 7.7e-21 104.8 62 69.4
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 3.7e-15 85.9 44 88.6
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 1.5e-13 80.5 46 80.4
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 1.9e-11 73.6 44 77.3


User provided reference genes

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