Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 0.0e+00 1270.4 648 100.0
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 1.3e-274 949.5 649 74.9
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 3.0e-274 948.3 640 74.5
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 5.1e-274 947.6 649 74.6
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 6.6e-274 947.2 648 73.9
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 8.6e-274 946.8 649 74.3
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 2.5e-273 945.3 648 73.9
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 3.3e-273 944.9 648 73.6
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 5.6e-273 944.1 648 73.3
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 7.3e-273 943.7 648 73.3
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 1.2e-272 943.0 648 73.6
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 2.1e-272 942.2 648 74.1
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 3.6e-272 941.4 649 74.1
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 4.7e-272 941.0 639 74.2
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 8.1e-272 940.3 648 73.1
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 1.1e-271 939.9 639 74.2
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 1.4e-271 939.5 648 73.3
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 1.8e-271 939.1 648 73.6
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 2.3e-271 938.7 642 74.0
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 2.3e-271 938.7 648 73.0
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 3.1e-271 938.3 649 73.7
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 4.0e-271 937.9 648 73.3
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 5.2e-271 937.6 648 73.5
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 6.8e-271 937.2 640 73.9
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 1.5e-270 936.0 640 73.9
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 2.0e-270 935.6 648 72.8
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 2.0e-270 935.6 642 72.6
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 2.6e-270 935.3 648 73.0
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 3.4e-270 934.9 647 73.7
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 3.4e-270 934.9 648 72.8
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 4.4e-270 934.5 648 73.1
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 7.6e-270 933.7 642 73.7
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 7.6e-270 933.7 648 72.4
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 9.9e-270 933.3 640 73.3
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 1.3e-269 932.9 640 73.9
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 1.3e-269 932.9 642 73.1
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 1.3e-269 932.9 640 73.3
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 1.3e-269 932.9 648 72.8
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 1.3e-269 932.9 648 72.7
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 1.3e-269 932.9 641 73.8
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 1.3e-269 932.9 648 72.7
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 1.3e-269 932.9 648 73.0
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 1.7e-269 932.6 648 73.1
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 2.2e-269 932.2 640 73.9
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 2.9e-269 931.8 642 73.1
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 3.8e-269 931.4 648 72.8
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 3.8e-269 931.4 642 73.1
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 4.9e-269 931.0 648 72.5
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 4.9e-269 931.0 648 72.5
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 6.4e-269 930.6 645 72.9
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 6.4e-269 930.6 640 73.6
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 6.4e-269 930.6 647 72.3
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 8.4e-269 930.2 642 72.9
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 8.4e-269 930.2 642 72.9
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 1.1e-268 929.9 645 72.9
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 1.4e-268 929.5 644 73.0
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 1.4e-268 929.5 642 72.9
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 1.9e-268 929.1 642 72.9
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 1.9e-268 929.1 642 72.9
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 1.9e-268 929.1 642 72.9
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.9e-268 929.1 648 72.7
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 1.9e-268 929.1 640 72.8
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 1.9e-268 929.1 648 72.7
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 1.9e-268 929.1 647 73.0
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 2.4e-268 928.7 642 72.7
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 2.4e-268 928.7 645 72.7
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 2.4e-268 928.7 640 72.8
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 2.4e-268 928.7 649 73.7
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 3.2e-268 928.3 642 73.2
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 3.2e-268 928.3 648 72.7
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 3.2e-268 928.3 648 72.8
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 4.1e-268 927.9 645 72.7
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 5.4e-268 927.5 648 72.1
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 7.1e-268 927.2 648 72.2
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 9.2e-268 926.8 648 72.4
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 1.6e-267 926.0 648 72.4
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 2.1e-267 925.6 643 72.6
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 2.7e-267 925.2 645 72.4
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 2.7e-267 925.2 648 72.1
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 4.6e-267 924.5 640 72.7
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 7.8e-267 923.7 648 72.2
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 1.0e-266 923.3 640 72.3
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 1.7e-266 922.5 642 72.4
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 3.9e-266 921.4 647 70.9
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 5.1e-266 921.0 648 72.5
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 6.6e-266 920.6 648 71.8
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 6.6e-266 920.6 648 71.9
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 8.6e-266 920.2 644 72.2
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 1.5e-265 919.5 637 73.0
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 1.5e-265 919.5 658 71.4
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.2e-264 916.4 640 72.7
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 2.1e-264 915.6 639 72.1
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 1.8e-263 912.5 642 71.3
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 4.0e-263 911.4 648 72.1
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 5.2e-263 911.0 642 72.0
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 2.0e-262 909.1 648 72.2
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 3.4e-262 908.3 642 70.9
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 4.4e-262 907.9 673 69.2
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 1.7e-261 906.0 642 72.0
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 1.7e-261 906.0 643 71.7
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 7.1e-260 900.6 639 71.5
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 1.2e-259 899.8 639 71.0
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 1.6e-259 899.4 640 71.4
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 6.0e-259 897.5 639 71.2
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 3.6e-256 888.3 592 74.7
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 2.6e-246 855.5 658 68.5
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 1.1e-244 850.1 652 68.4
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 4.5e-238 828.2 638 65.0
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 2.5e-236 822.4 543 75.3
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 2.1e-235 819.3 543 74.6
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 4.2e-220 768.5 551 71.7
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 5.1e-218 761.5 503 77.7
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 5.1e-218 761.5 646 59.3
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 1.1e-209 733.8 640 61.9
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 1.5e-209 733.4 501 73.7
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 2.6e-206 722.6 512 70.9
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.5e-196 690.3 512 68.6
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 2.2e-192 676.4 648 58.5
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 9.5e-188 661.0 649 57.5
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 1.2e-179 634.0 648 51.2
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 5.0e-165 585.5 453 65.3
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 3.3e-164 582.8 544 58.6
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.6e-142 510.8 454 59.9
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 7.8e-142 508.4 361 69.8
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 4.6e-134 482.6 414 64.3
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 9.6e-124 448.4 317 72.9
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 1.6e-115 421.0 531 43.7
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 1.4e-114 417.9 299 72.9
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 3.0e-109 400.2 274 74.1
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 1.7e-72 278.1 203 70.9
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 5.9e-65 253.1 179 73.2
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 1.4e-61 241.9 240 54.2
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 2.6e-60 237.7 163 76.1
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.3e-59 235.3 242 55.4
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 6.4e-59 233.0 165 74.5
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 2.3e-48 198.0 150 66.0
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 5.2e-45 186.8 270 41.9
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 4.7e-38 163.7 233 47.2
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 4.0e-37 160.6 104 76.0
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 1.4e-34 152.1 90 84.4
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 2.7e-33 147.9 86 76.7
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 3.3e-31 141.0 99 70.7
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 2.1e-30 138.3 74 82.4
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 4.6e-25 120.6 92 66.3
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 1.3e-24 119.0 92 65.2
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 5.1e-24 117.1 108 60.2
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 3.3e-23 114.4 99 61.6
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 4.0e-21 107.5 115 52.2
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 5.3e-21 107.1 162 48.8
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 6.4e-19 100.1 131 48.1
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 1.1e-18 99.4 53 90.6
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 1.6e-17 95.5 50 90.0
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 2.3e-16 91.7 58 74.1
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.1e-15 89.4 63 63.5
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 2.4e-13 81.6 51 74.5
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 1.3e-08 65.9 65 50.8
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 9.6e-07 59.7 86 41.9
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 4.8e-06 57.4 61 52.5


User provided reference genes

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