Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g24064 Chara braunii HOM05D006277 ORTHO05D007673 5.8e-267 924.1 630 100.0
CBR_g31158 Chara braunii HOM05D000601 ORTHO05D007673 1.2e-51 208.8 412 44.7
CBR_g31160 Chara braunii HOM05D006277 ORTHO05D007673 1.4e-50 205.3 138 78.3
CBR_g39579 Chara braunii HOM05D000601 ORTHO05D007673 2.4e-47 194.5 595 39.3
Os02g0147100 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 3.7e-27 127.5 194 43.3
HPP92_017121 Vanilla planifolia HOM05D006277 ORTHO05D007673 6.2e-27 126.7 137 49.6
Os02g0147700 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 1.1e-26 125.9 191 43.5
Sc19g0000370 Simmondsia chinensis HOM05D006277 ORTHO05D007673 1.1e-26 125.9 157 47.1
HanXRQChr04g0117941 Helianthus annuus HOM05D006277 ORTHO05D007673 1.4e-26 125.6 203 38.4
ECA238G0260 Erigeron canadensis HOM05D006277 ORTHO05D007673 1.8e-26 125.2 202 41.1
Solyc03g079950.4 Solanum lycopersicum HOM05D006277 ORTHO05D007673 4.0e-26 124.0 150 46.7
CAN.G303.58 Capsicum annuum HOM05D006277 ORTHO05D007673 9.0e-26 122.9 194 42.3
Mapoly0143s0029 Marchantia polymorpha HOM05D006277 ORTHO05D007673 2.0e-25 121.7 159 50.9
Medtr3g093330 Medicago truncatula HOM05D006277 ORTHO05D007673 3.4e-25 120.9 186 41.9
CARHR188820 Cardamine hirsuta HOM05D006277 ORTHO05D007673 4.5e-25 120.6 185 42.2
PGSC0003DMG400000548 Solanum tuberosum HOM05D006277 ORTHO05D007673 4.5e-25 120.6 278 33.5
VMungo1309G1324 Vigna mungo HOM05D006277 ORTHO05D007673 4.5e-25 120.6 276 36.6
AT5G24630 Arabidopsis thaliana HOM05D006277 ORTHO05D007673 5.8e-25 120.2 179 43.6
EL10Ac3g05132 Beta vulgaris HOM05D006277 ORTHO05D007673 5.8e-25 120.2 209 38.8
AL6G36240 Arabidopsis lyrata HOM05D006277 ORTHO05D007673 1.0e-24 119.4 177 42.9
BcaNung02006 Brassica carinata HOM05D006277 ORTHO05D007673 1.0e-24 119.4 228 37.7
Ca_16838_v3 Cicer arietinum L. HOM05D006277 ORTHO05D007673 1.0e-24 119.4 253 37.5
Sopen03g027470 Solanum pennellii HOM05D006277 ORTHO05D007673 1.0e-24 119.4 203 38.9
COL.COLO4_14399 Corchorus olitorius HOM05D006277 ORTHO05D007673 1.3e-24 119.0 185 41.6
Nitab4.5_0007121g0020 Nicotiana tabacum HOM05D006277 ORTHO05D007673 1.3e-24 119.0 240 37.5
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 1.7e-24 118.6 137 46.7
CSS0047728 Camellia sinensis var. sinensis HOM05D006277 ORTHO05D007673 1.7e-24 118.6 119 52.1
AUR62030650 Chenopodium quinoa HOM05D006277 ORTHO05D007673 2.2e-24 118.2 155 43.9
Glyma.06G139100 Glycine max HOM05D006277 ORTHO05D007673 3.8e-24 117.5 243 36.2
MBI16_g10337_MAGBIO Magnolia biondii HOM05D006277 ORTHO05D007673 3.8e-24 117.5 229 39.3
ATR0626G063 Amborella trichopoda HOM05D006277 ORTHO05D007673 4.9e-24 117.1 195 41.0
Sp2g22750 Schrenkiella parvula HOM05D006277 ORTHO05D007673 4.9e-24 117.1 227 38.8
SEGI_26440 Sequoiadendron giganteum HOM05D006277 ORTHO05D007673 6.5e-24 116.7 251 36.3
AagrBONN_evm.TU.Sc2ySwM_362.1883 Anthoceros agrestis HOM05D006277 ORTHO05D007673 1.9e-23 115.2 244 37.3
Hund09753 Selenicereus undatus HOM05D006277 ORTHO05D007673 2.5e-23 114.8 271 33.6
Lsat_1_v5_gn_2_135460 Lactuca sativa HOM05D006277 ORTHO05D007673 3.2e-23 114.4 241 38.2
PSO384G3009 Papaver somniferum HOM05D006277 ORTHO05D007673 3.2e-23 114.4 187 40.1
Cc02_g00600 Coffea canephora HOM05D006277 ORTHO05D007673 4.2e-23 114.0 199 41.2
Lj1g0014471 Lotus japonicus HOM05D006277 ORTHO05D007673 4.2e-23 114.0 263 36.1
C07p43080 Brassica napus HOM05D006277 ORTHO05D007673 5.5e-23 113.6 238 35.7
Pp3c7_3940 Physcomitrium patens HOM05D006277 ORTHO05D007673 7.1e-23 113.2 185 42.2
BolC7t44835H Brassica oleracea HOM05D006277 ORTHO05D007673 9.3e-23 112.8 238 35.7
Aa31LG11G3890 Aethionema arabicum HOM05D006277 ORTHO05D007673 1.2e-22 112.5 257 35.4
AUR62028116 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.6e-22 112.1 311 30.9
CDE02G3091 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 2.1e-22 111.7 151 43.7
Thhalv10004336m.g Eutrema salsugineum HOM05D006277 ORTHO05D007673 2.1e-22 111.7 325 33.8
Sabra12G0006800 Salix brachista HOM05D006277 ORTHO05D007673 2.1e-22 111.7 230 37.0
Manes.18G108300 Manihot esculenta HOM05D006277 ORTHO05D007673 2.7e-22 111.3 226 37.2
Atru.chr12.2501 Acer truncatum HOM05D006277 ORTHO05D007673 3.5e-22 110.9 184 39.7
Ciclev10005393m.g Citrus clementina HOM05D006277 ORTHO05D007673 3.5e-22 110.9 249 34.5
Sabra12G0000500 Salix brachista HOM05D006277 ORTHO05D007673 3.5e-22 110.9 230 37.0
SalBow4G0692 Salvia bowleyana HOM05D006277 ORTHO05D007673 3.5e-22 110.9 289 33.2
Carub.0006s2249 Capsella rubella HOM05D006277 ORTHO05D007673 4.6e-22 110.5 327 35.5
Lalb_Chr23g0272041 Lupinus albus HOM05D006277 ORTHO05D007673 4.6e-22 110.5 190 39.5
Phvul.009G040200 Phaseolus vulgaris HOM05D006277 ORTHO05D007673 4.6e-22 110.5 277 34.3
Atru.chr12.2525 Acer truncatum HOM05D006277 ORTHO05D007673 6.0e-22 110.2 184 39.7
Aqoxy7G02781 Aquilegia oxysepala HOM05D006277 ORTHO05D007673 6.0e-22 110.2 194 37.6
Duzib205G1288 Durio zibethinus HOM05D006277 ORTHO05D007673 6.0e-22 110.2 266 34.6
Sed0010003 Sechium edule HOM05D006277 ORTHO05D007673 7.9e-22 109.8 262 34.0
Migut.F00123 Erythranthe guttata HOM05D006277 ORTHO05D007673 1.0e-21 109.4 235 37.9
Glyma.04G225700 Glycine max HOM05D006277 ORTHO05D007673 1.0e-21 109.4 290 34.1
Thecc.03G212000 Theobroma cacao HOM05D006277 ORTHO05D007673 1.0e-21 109.4 287 34.1
arahy.Tifrunner.gnm1.ann1.VE49IY Arachis hypogaea HOM05D006277 ORTHO05D007673 1.3e-21 109.0 332 33.4
arahy.Tifrunner.gnm1.ann1.YJ5L14 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.3e-21 109.0 328 33.5
PSO170G0956 Papaver somniferum HOM05D006277 ORTHO05D007673 1.3e-21 109.0 190 41.1
TAR626G1328 Trochodendron aralioides HOM05D006277 ORTHO05D007673 1.3e-21 109.0 218 36.7
A06p35430 Brassica napus HOM05D006277 ORTHO05D007673 1.8e-21 108.6 197 39.6
BraA06t26466Z Brassica rapa HOM05D006277 ORTHO05D007673 1.8e-21 108.6 197 39.6
AUR62005949 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.8e-21 108.6 334 31.7
CsaV3_2G019700 Cucumis sativus L. HOM05D006277 ORTHO05D007673 1.8e-21 108.6 235 36.6
Dinv29192 Davidia involucrata HOM05D006277 ORTHO05D007673 2.3e-21 108.2 275 34.5
Gohir.A08G106400 Gossypium hirsutum HOM05D006277 ORTHO05D007673 2.3e-21 108.2 203 37.9
Gorai.004G126300 Gossypium raimondii HOM05D006277 ORTHO05D007673 2.3e-21 108.2 203 37.9
QL09p006002 Quercus lobata HOM05D006277 ORTHO05D007673 2.3e-21 108.2 276 34.1
Zm00001eb232230 Zea mays HOM05D006277 ORTHO05D007673 2.3e-21 108.2 248 36.3
CANSAT21G1902 Cannabis sativa HOM05D006277 ORTHO05D007673 3.0e-21 107.8 262 34.7
arahy.Tifrunner.gnm1.ann1.NYS2P6 Arachis hypogaea HOM05D006277 ORTHO05D007673 3.9e-21 107.5 328 33.5
Prupe.2G322100 Prunus persica HOM05D006277 ORTHO05D007673 3.9e-21 107.5 205 39.5
Psat6g243000 Pisum sativum HOM05D006277 ORTHO05D007673 6.7e-21 106.7 283 34.6
HPP92_017116 Vanilla planifolia HOM05D006277 ORTHO05D007673 6.7e-21 106.7 311 33.1
MSTRG.26953 Avicennia marina HOM05D006277 ORTHO05D007673 8.7e-21 106.3 230 38.3
arahy.Tifrunner.gnm1.ann1.T9XRV5 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.1e-20 105.9 195 38.5
TPR.G35912 Trifolium pratense HOM05D006277 ORTHO05D007673 1.1e-20 105.9 286 35.0
PSO063G0207 Papaver somniferum HOM05D006277 ORTHO05D007673 1.5e-20 105.5 215 38.6
Potri.012G004700 Populus trichocarpa HOM05D006277 ORTHO05D007673 1.5e-20 105.5 206 36.4
TWI59G0797 Tripterygium wilfordii HOM05D006277 ORTHO05D007673 1.5e-20 105.5 230 37.0
Nitab4.5_0000021g0190 Nicotiana tabacum HOM05D006277 ORTHO05D007673 1.9e-20 105.1 295 34.6
THA.LOC104803317 Tarenaya hassleriana HOM05D006277 ORTHO05D007673 2.5e-20 104.8 298 31.9
Pp3c11_21910 Physcomitrium patens HOM05D006277 ORTHO05D007673 4.3e-20 104.0 253 35.6
FAN10G1913 Fragaria x ananassa HOM05D006277 ORTHO05D007673 7.4e-20 103.2 297 33.7
CiPaw.06G038300 Carya illinoinensis HOM05D006277 ORTHO05D007673 1.6e-19 102.1 209 37.3
FAN10G3443 Fragaria x ananassa HOM05D006277 ORTHO05D007673 2.1e-19 101.7 297 33.3
ClCG07G009750 Citrullus lanatus HOM05D006277 ORTHO05D007673 4.8e-19 100.5 278 34.9
MELO3C023191.2 Cucumis melo HOM05D006277 ORTHO05D007673 4.8e-19 100.5 262 33.6
Eucgr.K00479 Eucalyptus grandis HOM05D006277 ORTHO05D007673 4.8e-19 100.5 230 34.8
FAN01G0327 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.1e-18 99.4 297 32.7
FvH4_7g33320 Fragaria vesca HOM05D006277 ORTHO05D007673 1.4e-18 99.0 297 33.0
SGA_v2.0_scaffold18G08496 Striga asiatica HOM05D006277 ORTHO05D007673 1.4e-18 99.0 286 31.1
RcHm_v2.0_Chr1g0383301 Rosa chinensis HOM05D006277 ORTHO05D007673 9.0e-18 96.3 343 33.2
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 1.2e-17 95.9 222 35.6
LjContig00312_ERROPOS870357g0003049 Lotus japonicus HOM05D006277 ORTHO05D007673 1.2e-17 95.9 264 35.2
MD07G1303400 Malus domestica HOM05D006277 ORTHO05D007673 2.0e-17 95.1 291 32.6
Peaxi162Scf01026g00268 Petunia axillaris HOM05D006277 ORTHO05D007673 4.5e-17 94.0 301 33.6
MD01G1231400 Malus domestica HOM05D006277 ORTHO05D007673 5.9e-17 93.6 328 29.9
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 7.6e-17 93.2 154 41.6
DCAR_010558 Daucus carota HOM05D006277 ORTHO05D007673 7.6e-17 93.2 119 47.1
GSVIVG01038680001 Vitis vinifera HOM05D006277 ORTHO05D007673 1.3e-16 92.4 275 31.3
Rhsim03G0218400 Rhododendron simsii HOM05D006277 ORTHO05D007673 2.2e-16 91.7 276 33.3
FAN03G1266 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.1e-15 89.4 289 32.2
Haze_00334 Corylus avellana HOM05D006277 ORTHO05D007673 7.2e-15 86.7 186 34.9
PGR142G2769 Punica granatum HOM05D006277 ORTHO05D007673 2.7e-14 84.7 294 31.0
BcaNung01248 Brassica carinata HOM05D006277 ORTHO05D007673 7.9e-14 83.2 233 33.0
Actinidia08720 Actinidia chinensis HOM05D006277 ORTHO05D007673 1.8e-13 82.0 100 45.0
Gohir.D08G117800 Gossypium hirsutum HOM05D006277 ORTHO05D007673 3.0e-13 81.3 82 48.8
A09p06430 Brassica napus HOM05D000010 ORTHO05D000063 3.9e-13 80.9 194 35.6
PSO384G0555 Papaver somniferum HOM05D006277 ORTHO05D007673 1.5e-12 79.0 162 39.5
vmacro06474 Vaccinium macrocarpon HOM05D006277 ORTHO05D007673 2.5e-12 78.2 388 29.1
C09p07160 Brassica napus HOM05D000010 ORTHO05D000063 3.3e-12 77.8 149 38.9
Nn7g37003 Nelumbo nucifera HOM05D006277 ORTHO05D007673 4.3e-12 77.4 122 40.2
Cfa016128 Carpinus fangiana HOM05D006277 ORTHO05D007673 1.6e-11 75.5 155 33.5
MCO04G384 Micromonas commoda HOM05D006277 ORTHO05D007673 1.8e-10 72.0 168 33.3
Cpa.g.sc3.186 Carica papaya HOM05D006277 ORTHO05D007673 9.1e-10 69.7 338 27.5
Cre02.g105050 Chlamydomonas reinhardtii HOM05D006277 ORTHO05D007673 3.4e-09 67.8 135 37.8
CBR_g29826 Chara braunii HOM05D000019 ORTHO05D000048 4.5e-09 67.4 161 47.8
Oeu010718.2 Olea europaea HOM05D006277 ORTHO05D007673 5.9e-09 67.0 298 26.2
Potri.015G000701 Populus trichocarpa HOM05D006277 ORTHO05D007673 1.7e-08 65.5 106 36.8
CDE06G1557 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 6.5e-08 63.5 168 31.0
CBR_g29827 Chara braunii HOM05D000601 ORTHO05D137297 2.5e-07 61.6 78 52.6
CBR_g39576 Chara braunii HOM05D008350 ORTHO05D010575 4.6e-06 57.4 106 47.2


User provided reference genes

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