Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 8.3e-197 690.3 370 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 7.0e-103 378.3 282 67.0
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 9.1e-103 377.9 311 63.7
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 4.0e-98 362.5 320 60.3
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 1.8e-90 337.0 246 66.3
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 1.2e-89 334.3 246 65.9
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 2.0e-89 333.6 246 65.9
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 4.4e-89 332.4 246 65.4
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 5.7e-89 332.0 246 65.4
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 9.8e-89 331.3 246 64.6
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 1.7e-88 330.5 246 65.9
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 1.7e-88 330.5 262 61.8
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 2.2e-88 330.1 276 60.5
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 4.9e-88 328.9 246 64.2
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 4.9e-88 328.9 246 65.0
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 4.9e-88 328.9 246 65.4
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 4.9e-88 328.9 246 64.6
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 8.3e-88 328.2 246 63.0
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 1.1e-87 327.8 246 65.4
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 1.1e-87 327.8 246 65.0
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 1.1e-87 327.8 270 61.1
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 1.4e-87 327.4 246 65.0
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 2.4e-87 326.6 246 63.8
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 4.1e-87 325.9 246 65.0
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 5.4e-87 325.5 246 64.2
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 5.4e-87 325.5 246 63.8
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 7.0e-87 325.1 253 62.5
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 7.0e-87 325.1 246 63.8
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 7.0e-87 325.1 265 61.1
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 7.0e-87 325.1 246 64.2
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 9.2e-87 324.7 263 60.1
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 9.2e-87 324.7 243 63.8
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 9.2e-87 324.7 246 63.8
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 1.2e-86 324.3 246 65.0
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 1.6e-86 323.9 246 64.2
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 2.0e-86 323.6 246 63.4
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 2.0e-86 323.6 265 60.8
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 2.0e-86 323.6 246 63.4
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 2.0e-86 323.6 246 64.2
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 2.7e-86 323.2 263 59.7
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 2.7e-86 323.2 246 63.4
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 3.5e-86 322.8 275 59.6
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 4.6e-86 322.4 246 63.8
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 4.6e-86 322.4 246 63.8
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 5.9e-86 322.0 246 64.2
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 7.8e-86 321.6 246 63.4
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 7.8e-86 321.6 253 61.7
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 1.0e-85 321.2 246 63.8
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 1.0e-85 321.2 246 63.8
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 1.3e-85 320.9 280 58.6
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 1.3e-85 320.9 246 63.8
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 1.7e-85 320.5 246 63.8
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 1.7e-85 320.5 246 62.2
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 2.3e-85 320.1 246 62.6
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 2.3e-85 320.1 246 63.0
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 2.9e-85 319.7 243 64.6
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 3.9e-85 319.3 265 58.1
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 3.9e-85 319.3 246 62.2
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 5.0e-85 318.9 250 60.8
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 8.6e-85 318.2 246 62.6
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 8.6e-85 318.2 292 56.5
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 8.6e-85 318.2 246 63.4
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 1.1e-84 317.8 243 64.2
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.9e-84 317.0 243 64.2
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 3.3e-84 316.2 265 58.1
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.3e-84 316.2 246 62.6
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 3.3e-84 316.2 235 63.8
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 4.3e-84 315.8 243 63.0
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 4.3e-84 315.8 243 63.0
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 4.3e-84 315.8 243 63.0
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 4.3e-84 315.8 246 62.6
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 5.6e-84 315.5 265 59.6
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 5.6e-84 315.5 246 63.0
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 9.5e-84 314.7 264 59.5
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 1.2e-83 314.3 243 62.6
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 2.8e-83 313.2 265 59.2
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 2.8e-83 313.2 246 61.8
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 8.0e-83 311.6 243 63.4
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 1.0e-82 311.2 254 59.4
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 1.0e-82 311.2 246 61.4
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 1.4e-82 310.8 246 62.2
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 2.3e-82 310.1 246 62.6
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 3.1e-82 309.7 246 60.2
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 4.0e-82 309.3 243 61.3
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 4.0e-82 309.3 243 61.3
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 4.0e-82 309.3 243 61.3
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 4.0e-82 309.3 243 61.3
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 4.0e-82 309.3 243 61.3
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 4.0e-82 309.3 246 61.8
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 4.0e-82 309.3 313 53.4
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 6.8e-82 308.5 246 60.6
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 1.2e-81 307.8 246 61.4
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 1.2e-81 307.8 246 62.2
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 1.5e-81 307.4 246 63.0
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 1.5e-81 307.4 246 61.0
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 4.4e-81 305.8 243 60.9
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 7.5e-81 305.1 246 62.6
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 2.2e-80 303.5 246 61.8
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 2.9e-80 303.1 244 59.8
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 4.9e-80 302.4 246 61.0
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 4.9e-80 302.4 244 59.8
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 1.4e-79 300.8 246 59.8
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 3.2e-79 299.7 251 61.8
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 5.4e-79 298.9 258 57.8
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 2.0e-78 297.0 252 60.3
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 2.7e-78 296.6 252 60.3
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 3.5e-78 296.2 254 59.4
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 7.8e-78 295.0 257 59.1
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.0e-77 294.7 257 59.1
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.3e-77 294.3 257 59.1
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 3.9e-77 292.7 310 51.3
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 5.0e-77 292.4 257 59.5
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 4.7e-75 285.8 281 52.3
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.1e-74 284.6 242 58.7
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 1.4e-74 284.3 243 59.7
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 1.2e-73 281.2 249 56.6
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 1.2e-70 271.2 282 50.7
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 1.6e-70 270.8 243 58.4
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 1.3e-69 267.7 243 58.0
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 1.9e-68 263.8 217 59.9
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 8.1e-67 258.5 231 56.3
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 3.0e-61 240.0 251 51.0
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 3.9e-61 239.6 174 63.8
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 5.1e-61 239.2 174 62.6
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.6e-59 234.2 246 51.2
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.2e-57 228.0 215 54.9
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 2.2e-56 223.8 255 45.5
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 8.7e-53 211.8 149 63.8
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.6e-49 200.3 158 61.4
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 6.2e-43 179.1 183 51.4
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 1.1e-42 178.3 227 45.8
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 2.1e-38 164.1 165 52.7
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 6.2e-35 152.5 358 33.0
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 1.8e-34 151.0 263 37.3
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 1.3e-32 144.8 113 62.8
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.7e-24 117.9 93 55.9
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 5.0e-24 116.3 93 54.8
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 5.0e-24 116.3 93 54.8
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 7.2e-23 112.5 77 68.8
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 1.2e-22 111.7 97 61.9
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 3.5e-22 110.2 95 62.1
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.7e-19 100.1 177 34.5
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 8.8e-13 79.0 77 54.5
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 4.8e-11 73.2 80 40.0
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 3.1e-10 70.5 55 54.5
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 1.1e-07 62.0 39 74.4
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 1.1e-07 62.0 39 74.4


User provided reference genes

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