Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 3.2e-251 871.3 448 100.0
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 1.3e-151 540.4 434 65.0
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 7.6e-136 488.0 434 60.1
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.2e-135 486.5 435 60.5
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 4.6e-133 478.8 437 58.4
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 5.1e-132 475.3 435 60.7
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 5.6e-131 471.9 437 57.2
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 5.6e-131 471.9 429 60.4
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 7.3e-131 471.5 433 58.0
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.3e-130 470.7 436 58.3
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 2.8e-130 469.5 436 58.7
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 8.1e-130 468.0 433 59.4
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 8.1e-130 468.0 410 62.4
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.1e-129 467.6 433 59.4
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 3.1e-129 466.1 436 58.0
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 5.3e-129 465.3 436 57.8
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 2.0e-128 463.4 467 55.0
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 2.2e-127 459.9 439 57.6
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 2.9e-127 459.5 437 58.1
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 3.8e-127 459.1 432 57.9
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 6.4e-127 458.4 435 57.2
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.9e-126 456.8 440 56.1
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 5.4e-126 455.3 438 56.4
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 1.2e-125 454.1 423 57.9
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 1.0e-124 451.1 454 56.8
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 1.3e-124 450.7 434 58.1
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 3.9e-124 449.1 423 56.3
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 1.1e-123 447.6 429 57.1
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 4.3e-123 445.7 435 57.7
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 5.6e-123 445.3 435 55.2
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 7.4e-123 444.9 422 57.3
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 2.1e-122 443.4 435 55.9
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 3.7e-122 442.6 423 56.5
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 6.2e-122 441.8 433 56.4
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 6.2e-122 441.8 436 55.5
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 1.1e-121 441.0 433 56.4
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 1.4e-121 440.7 423 55.8
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 2.4e-121 439.9 434 55.5
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 2.4e-121 439.9 430 56.7
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.4e-121 439.9 351 64.7
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 3.1e-121 439.5 392 61.7
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 3.1e-121 439.5 431 56.1
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 5.3e-121 438.7 423 55.8
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 5.3e-121 438.7 423 55.6
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 6.9e-121 438.3 438 55.3
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 6.9e-121 438.3 423 56.0
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 1.5e-120 437.2 422 55.2
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 4.5e-120 435.6 438 53.9
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 5.8e-120 435.3 432 55.1
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 1.7e-119 433.7 435 54.5
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.1e-118 431.0 441 54.4
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 1.1e-118 431.0 445 54.4
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 1.1e-118 431.0 435 54.7
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 2.5e-118 429.9 392 61.5
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.5e-118 429.9 404 58.4
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.5e-118 429.9 404 58.4
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 2.5e-118 429.9 404 58.4
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 5.5e-118 428.7 435 54.3
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 9.3e-118 427.9 420 54.3
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 9.3e-118 427.9 435 54.0
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 3.5e-117 426.0 423 55.3
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 1.8e-116 423.7 435 53.8
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 2.3e-116 423.3 440 54.1
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 2.3e-116 423.3 435 54.3
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.3e-116 423.3 431 55.0
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 3.0e-116 422.9 435 53.6
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 7.4e-115 418.3 432 53.7
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 4.8e-114 415.6 438 54.6
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 3.1e-113 412.9 383 58.7
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 3.1e-113 412.9 383 58.7
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.1e-113 412.9 349 62.5
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 6.9e-113 411.8 419 55.1
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 9.0e-113 411.4 454 50.7
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 3.4e-112 409.5 422 53.3
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 4.5e-112 409.1 438 54.8
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 2.2e-111 406.8 436 51.8
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 6.5e-111 405.2 436 51.8
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 2.5e-110 403.3 460 48.0
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 3.2e-110 402.9 455 50.8
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 1.6e-109 400.6 432 50.0
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 2.7e-109 399.8 357 60.5
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 6.0e-109 398.7 429 52.2
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 7.9e-109 398.3 432 50.2
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 2.3e-108 396.7 449 50.1
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 9.7e-107 391.3 436 50.5
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 2.8e-106 389.8 432 50.2
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 8.2e-106 388.3 439 48.7
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.1e-105 387.9 435 52.0
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.4e-105 387.5 420 53.3
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 2.4e-105 386.7 446 49.1
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 6.9e-105 385.2 448 48.7
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 2.0e-104 383.6 438 48.4
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 4.5e-104 382.5 420 50.2
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.0e-103 381.3 406 52.7
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 2.9e-103 379.8 452 47.8
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 3.8e-103 379.4 453 47.7
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.1e-102 377.9 385 54.5
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 4.2e-102 375.9 403 51.4
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 5.5e-102 375.6 453 47.0
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 9.4e-102 374.8 350 59.4
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 1.6e-101 374.0 453 46.6
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 1.6e-101 374.0 375 55.7
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 4.6e-101 372.5 386 52.3
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 5.1e-100 369.0 316 63.0
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.1e-99 367.9 384 53.4
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 4.8e-98 362.5 280 67.1
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 6.3e-98 362.1 440 48.6
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 8.2e-98 361.7 299 63.5
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 6.9e-97 358.6 341 57.8
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 9.1e-97 358.2 434 48.8
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 2.6e-96 356.7 422 48.8
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.4e-96 356.3 300 61.7
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 5.0e-95 352.4 398 50.3
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 1.4e-94 350.9 398 50.0
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 4.1e-89 332.8 339 52.8
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.6e-88 330.1 452 46.0
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 6.1e-85 318.9 423 43.3
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 5.2e-84 315.8 397 45.8
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 5.7e-83 312.4 306 54.6
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 1.5e-75 287.7 522 40.2
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 1.3e-74 284.6 325 49.2
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 4.5e-72 276.2 322 46.9
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 2.7e-69 266.9 155 87.1
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.5e-67 261.2 180 76.1
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 2.6e-67 260.4 154 85.1
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.4e-67 260.0 320 44.7
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.4e-67 260.0 155 83.9
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 5.7e-67 259.2 154 84.4
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 1.2e-64 251.5 393 43.8
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 3.5e-64 250.0 155 81.3
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 9.8e-59 231.9 140 83.6
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.2e-58 230.7 145 80.0
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.1e-54 218.4 132 84.1
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.0e-52 211.8 278 45.7
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 5.2e-52 209.5 278 44.2
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.5e-51 208.0 183 60.7
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 9.8e-51 205.3 278 44.6
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 1.7e-50 204.5 182 58.8
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.7e-50 204.5 281 43.8
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 8.3e-50 202.2 354 38.1
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 3.5e-48 196.8 124 77.4
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 1.2e-45 188.3 278 41.4
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 2.1e-45 187.6 232 46.6
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.6e-45 186.8 277 41.5
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 8.9e-44 182.2 130 75.4
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 1.6e-40 171.4 98 87.8
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 4.6e-40 169.9 284 38.4
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.1e-38 165.2 200 46.0
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 4.0e-36 156.8 177 52.0
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 2.0e-35 154.5 131 61.1
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 2.4e-33 147.5 106 69.8
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 1.3e-31 141.7 196 46.4
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 3.9e-31 140.2 347 32.6
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 1.1e-30 138.7 160 46.9
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 9.6e-30 135.6 146 53.4
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 6.2e-29 132.9 234 37.2
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 9.9e-27 125.6 141 46.8
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 1.6e-21 108.2 218 36.2
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 8.1e-21 105.9 68 79.4
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 3.1e-20 104.0 58 89.7
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.1e-20 104.0 308 28.9
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 5.3e-20 103.2 55 94.5
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 4.8e-13 80.1 323 28.8
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 2.0e-11 74.7 112 39.3
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 3.8e-10 70.5 54 57.4
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.3e-07 62.0 85 41.2


User provided reference genes

Program Settings