Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 1.6e-261 905.6 459 100.0
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 1.5e-134 483.8 384 60.4
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 1.2e-133 480.7 387 60.5
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 2.1e-133 479.9 388 61.1
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 4.7e-133 478.8 391 60.1
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 6.2e-133 478.4 384 61.5
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 1.0e-132 477.6 387 60.5
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 1.4e-132 477.2 384 61.5
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 1.4e-132 477.2 384 61.5
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.4e-132 477.2 384 61.5
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 1.4e-132 477.2 393 60.1
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 2.3e-132 476.5 388 61.1
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 6.8e-132 474.9 384 60.7
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 8.9e-132 474.6 384 61.5
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 8.9e-132 474.6 385 61.3
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 8.9e-132 474.6 386 60.6
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 1.2e-131 474.2 386 59.6
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 1.2e-131 474.2 393 59.3
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 2.6e-131 473.0 391 58.1
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 4.4e-131 472.2 402 57.0
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 4.4e-131 472.2 385 60.3
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 5.8e-131 471.9 385 59.5
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 7.5e-131 471.5 385 59.7
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 1.3e-130 470.7 386 60.1
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 1.7e-130 470.3 385 60.5
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 2.2e-130 469.9 388 59.5
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 2.9e-130 469.5 384 60.4
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 3.7e-130 469.2 385 59.7
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 3.7e-130 469.2 385 60.3
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 3.7e-130 469.2 384 59.1
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.9e-130 468.8 388 59.5
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 4.9e-130 468.8 385 60.5
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 4.9e-130 468.8 384 60.2
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 6.4e-130 468.4 389 58.9
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 6.4e-130 468.4 388 59.0
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 8.3e-130 468.0 388 59.5
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 8.3e-130 468.0 385 60.0
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 8.3e-130 468.0 385 60.3
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 1.1e-129 467.6 384 58.9
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 1.1e-129 467.6 385 60.3
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 1.1e-129 467.6 388 59.5
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 1.9e-129 466.8 384 59.4
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 2.4e-129 466.5 395 59.7
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 3.2e-129 466.1 385 59.7
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 4.1e-129 465.7 385 59.0
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 5.4e-129 465.3 385 60.3
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 5.4e-129 465.3 384 60.7
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 7.0e-129 464.9 392 59.2
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 7.0e-129 464.9 386 60.4
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 9.2e-129 464.5 384 59.4
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 1.2e-128 464.2 385 59.0
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 2.0e-128 463.4 384 58.9
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 2.0e-128 463.4 385 59.7
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 2.7e-128 463.0 380 59.5
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 3.5e-128 462.6 385 59.2
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 4.6e-128 462.2 385 60.5
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 4.6e-128 462.2 386 59.6
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 6.0e-128 461.8 388 59.0
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 6.0e-128 461.8 384 59.6
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 7.8e-128 461.5 392 58.4
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 7.8e-128 461.5 390 57.4
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 1.0e-127 461.1 390 58.7
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 1.0e-127 461.1 385 59.2
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 1.3e-127 460.7 391 59.1
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 1.7e-127 460.3 385 60.5
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 1.7e-127 460.3 384 58.9
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 3.0e-127 459.5 384 58.1
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 5.0e-127 458.8 389 58.6
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 5.0e-127 458.8 384 58.9
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 6.6e-127 458.4 385 59.5
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 6.6e-127 458.4 385 59.2
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 6.6e-127 458.4 388 59.0
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 1.5e-126 457.2 392 58.9
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 2.5e-126 456.4 388 58.5
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 4.3e-126 455.7 384 58.1
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 1.6e-125 453.8 385 57.4
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.6e-125 453.8 403 57.6
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 2.1e-125 453.4 385 59.5
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 3.6e-125 452.6 388 57.7
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 1.8e-124 450.3 384 58.3
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 2.3e-124 449.9 384 58.6
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 2.3e-124 449.9 390 55.9
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 4.0e-124 449.1 385 58.7
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 4.0e-124 449.1 386 58.3
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 4.0e-124 449.1 385 58.7
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 6.8e-124 448.4 396 57.1
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 8.9e-124 448.0 393 58.3
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 1.2e-123 447.6 384 58.3
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 2.0e-123 446.8 385 58.4
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 2.0e-123 446.8 384 58.3
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 2.6e-123 446.4 385 57.9
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 3.4e-123 446.0 385 57.9
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 3.4e-123 446.0 385 57.9
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 5.8e-123 445.3 384 57.8
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 7.5e-123 444.9 387 57.4
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 1.3e-122 444.1 435 53.1
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 2.2e-122 443.4 390 55.1
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 2.9e-122 443.0 384 57.8
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 4.9e-122 442.2 384 57.6
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 6.4e-122 441.8 386 57.8
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 1.1e-121 441.0 417 54.4
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.1e-121 441.0 361 60.4
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 4.1e-121 439.1 384 56.5
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 1.0e-119 434.5 422 53.3
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 1.7e-119 433.7 360 59.4
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 1.1e-116 424.5 386 56.7
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 6.8e-116 421.8 390 55.6
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 8.9e-116 421.4 385 56.4
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 4.4e-115 419.1 384 55.7
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 5.8e-115 418.7 410 52.7
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 4.9e-114 415.6 473 48.2
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 1.1e-113 414.5 418 52.6
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 1.2e-112 411.0 385 55.3
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.2e-112 411.0 372 54.0
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 1.6e-112 410.6 338 57.1
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 5.1e-111 405.6 391 54.2
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 2.0e-107 393.7 388 53.9
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 1.4e-105 387.5 300 62.0
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 3.6e-101 372.9 315 58.1
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 2.7e-96 356.7 384 50.5
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 3.0e-87 326.6 264 62.1
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 4.8e-85 319.3 399 45.1
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 4.9e-82 309.3 397 42.8
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 4.5e-75 286.2 398 44.0
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 4.2e-73 279.6 219 62.6
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 6.1e-72 275.8 410 42.2
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 1.9e-70 270.8 361 44.0
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.1e-62 245.0 244 52.9
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.6e-62 243.8 233 53.6
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.6e-62 243.8 222 56.3
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.9e-60 235.7 192 58.3
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.3e-58 231.5 162 64.2
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 7.7e-51 205.7 182 53.8
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 3.8e-50 203.4 388 35.1
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 1.0e-47 195.3 479 33.0
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 2.5e-41 174.1 162 54.3
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 1.1e-33 148.7 92 71.7
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 2.9e-26 124.0 94 61.7
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 2.9e-26 124.0 94 61.7
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 9.5e-17 92.4 65 66.2
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.8e-16 90.9 137 46.0
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 8.0e-16 89.4 84 59.5
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 3.5e-11 73.9 47 70.2
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 1.3e-10 72.0 46 69.6
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 1.9e-09 68.2 43 67.4
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 4.3e-09 67.0 98 41.8


User provided reference genes

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