Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 3.4e-191 672.2 530 100.0
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 7.7e-103 378.6 231 78.8
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 3.8e-102 376.3 251 74.5
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 5.0e-102 375.9 251 74.1
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 6.5e-102 375.6 231 77.9
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 1.4e-101 374.4 231 79.2
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 1.4e-101 374.4 251 74.5
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.4e-101 374.4 246 75.2
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.4e-101 374.4 246 75.2
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 1.4e-101 374.4 246 75.2
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 1.4e-101 374.4 231 77.5
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 1.9e-101 374.0 261 70.5
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 2.5e-101 373.6 236 76.3
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 2.5e-101 373.6 231 78.4
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 4.2e-101 372.9 279 68.5
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 4.2e-101 372.9 273 70.7
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 5.5e-101 372.5 231 78.4
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 5.5e-101 372.5 231 77.1
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 9.4e-101 371.7 231 77.9
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 1.6e-100 370.9 264 70.8
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 1.6e-100 370.9 236 77.1
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 2.1e-100 370.5 266 71.4
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 2.7e-100 370.2 230 77.8
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 2.7e-100 370.2 230 78.3
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 3.6e-100 369.8 238 75.2
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 4.6e-100 369.4 231 76.6
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 6.1e-100 369.0 240 73.8
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 6.1e-100 369.0 271 71.2
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 6.1e-100 369.0 277 70.0
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 7.9e-100 368.6 246 74.0
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 7.9e-100 368.6 231 76.6
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 1.4e-99 367.9 231 77.1
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 1.8e-99 367.5 231 76.2
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.8e-99 367.5 248 72.6
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 1.8e-99 367.5 260 71.9
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 3.0e-99 366.7 265 68.3
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 3.0e-99 366.7 301 65.8
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 3.9e-99 366.3 230 75.7
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.9e-99 366.3 248 72.2
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 3.9e-99 366.3 231 74.5
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 3.9e-99 366.3 236 74.2
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 5.1e-99 365.9 248 72.2
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 6.7e-99 365.5 231 75.8
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 8.8e-99 365.2 240 73.3
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 8.8e-99 365.2 231 76.2
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 1.5e-98 364.4 281 66.5
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 2.0e-98 364.0 267 69.7
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 2.6e-98 363.6 231 75.3
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 2.6e-98 363.6 275 66.5
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 2.6e-98 363.6 248 71.4
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 3.3e-98 363.2 246 72.8
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 3.3e-98 363.2 231 77.1
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 4.4e-98 362.8 243 73.7
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 2.2e-97 360.5 264 68.9
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 3.7e-97 359.8 246 74.0
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 4.8e-97 359.4 269 69.1
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 8.2e-97 358.6 257 70.4
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 8.2e-97 358.6 238 73.9
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 1.1e-96 358.2 224 77.7
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 1.1e-96 358.2 260 70.4
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 1.8e-96 357.5 266 69.5
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 2.4e-96 357.1 231 74.0
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 5.3e-96 355.9 235 75.7
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 5.3e-96 355.9 228 75.9
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 6.9e-96 355.5 231 73.6
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 1.2e-95 354.8 258 69.8
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 1.2e-95 354.8 266 68.8
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 1.2e-95 354.8 272 67.3
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 4.5e-95 352.8 230 74.3
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 1.0e-94 351.7 275 68.0
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 1.0e-94 351.7 230 73.5
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 1.0e-94 351.7 230 73.5
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 1.3e-94 351.3 234 73.9
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 1.3e-94 351.3 230 73.5
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 2.2e-94 350.5 228 74.6
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 2.9e-94 350.1 228 74.6
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 5.0e-94 349.4 269 68.4
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 8.5e-94 348.6 276 65.2
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 8.5e-94 348.6 228 74.1
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 8.5e-94 348.6 230 73.5
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 8.5e-94 348.6 239 72.0
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 1.1e-93 348.2 228 73.7
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 1.1e-93 348.2 228 73.7
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 1.1e-93 348.2 228 73.7
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 1.1e-93 348.2 228 73.7
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 1.4e-93 347.8 246 70.3
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 2.5e-93 347.1 228 73.2
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 2.5e-93 347.1 228 73.2
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 3.2e-93 346.7 289 61.6
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 5.5e-93 345.9 228 73.2
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 9.4e-93 345.1 252 67.9
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 1.0e-91 341.7 212 76.9
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 1.4e-91 341.3 206 79.6
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 1.8e-91 340.9 275 62.2
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 5.2e-91 339.3 258 67.1
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.1e-90 338.2 261 67.8
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 2.6e-90 337.0 228 71.1
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 2.2e-89 334.0 336 56.5
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 8.2e-89 332.0 230 70.4
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 1.8e-88 330.9 315 56.8
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 1.5e-85 321.2 345 54.2
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 5.5e-85 319.3 340 52.9
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 2.8e-81 307.0 283 58.3
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 4.4e-74 283.1 177 77.4
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 9.8e-74 282.0 180 75.6
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 1.1e-72 278.5 177 76.8
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 9.1e-72 275.4 155 80.0
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 6.8e-67 259.2 221 62.9
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 7.5e-66 255.8 276 51.8
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 9.8e-66 255.4 149 75.8
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 7.0e-64 249.2 228 54.8
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 2.3e-62 244.2 160 69.4
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 2.1e-60 237.7 212 55.7
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 1.1e-56 225.3 144 75.0
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 9.8e-50 202.2 145 68.3
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 2.2e-49 201.1 134 73.1
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 8.3e-49 199.1 175 58.9
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 1.6e-47 194.9 147 67.3
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 4.6e-47 193.4 112 80.4
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 8.6e-46 189.1 171 61.4
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 1.3e-41 175.3 102 78.4
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.3e-41 175.3 192 54.2
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 5.4e-40 169.9 123 69.1
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.0e-38 165.6 97 79.4
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 2.3e-38 164.5 129 62.0
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 5.1e-38 163.3 96 76.0
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 4.3e-37 160.2 96 76.0
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 1.2e-36 158.7 154 59.7
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 1.6e-36 158.3 159 59.1
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 5.2e-35 153.3 108 73.1
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 8.9e-35 152.5 97 73.2
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 6.4e-33 146.4 84 76.2
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 2.1e-31 141.4 83 74.7
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 1.0e-30 139.0 96 74.0
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 8.7e-30 136.0 86 75.6
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 1.1e-29 135.6 96 75.0
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 3.3e-29 134.0 80 78.8
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 4.3e-29 133.7 80 76.2
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 1.4e-27 128.6 80 76.2
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 7.6e-26 122.9 98 66.3
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 6.0e-23 113.2 100 61.0
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.3e-22 112.1 81 67.9
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 1.8e-19 101.7 80 67.5
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 2.0e-18 98.2 60 76.7
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.2e-15 89.0 65 72.3
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 1.2e-15 89.0 54 68.5
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 2.7e-15 87.8 53 69.8
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 4.8e-12 77.0 61 59.0
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 1.4e-11 75.5 57 70.2
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 4.0e-11 73.9 71 62.0
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.0e-10 71.6 75 58.7
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 3.4e-10 70.9 43 79.1
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.9e-09 67.8 93 48.4


User provided reference genes

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