Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 2.6e-180 635.2 307 100.0
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 6.0e-76 288.5 313 49.5
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 6.3e-73 278.5 313 47.3
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 2.0e-71 273.5 313 49.2
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 2.1e-68 263.5 310 46.8
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 1.3e-67 260.8 310 45.5
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 5.1e-67 258.8 312 46.2
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.5e-66 257.3 311 46.3
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.9e-66 256.9 311 45.3
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 3.3e-66 256.1 313 44.7
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 3.3e-66 256.1 312 44.2
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 3.3e-66 256.1 311 45.0
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 4.3e-66 255.8 313 45.7
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 5.7e-66 255.4 313 46.3
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 5.7e-66 255.4 311 45.7
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 9.7e-66 254.6 310 44.8
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 9.7e-66 254.6 310 45.8
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 1.3e-65 254.2 311 45.7
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 1.6e-65 253.8 311 44.7
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.6e-65 253.8 311 45.0
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.6e-65 253.8 311 44.7
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 1.6e-65 253.8 311 44.7
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 4.8e-65 252.3 313 44.7
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 1.1e-64 251.1 311 44.1
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 1.1e-64 251.1 311 45.0
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 1.4e-64 250.8 311 44.4
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.8e-64 250.4 311 44.7
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.4e-64 250.0 311 44.4
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.4e-64 250.0 311 44.4
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 3.1e-64 249.6 311 45.0
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 3.1e-64 249.6 311 44.7
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 4.1e-64 249.2 311 44.7
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 5.3e-64 248.8 311 43.4
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 5.3e-64 248.8 311 43.4
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 5.3e-64 248.8 311 43.4
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 5.3e-64 248.8 310 45.2
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 6.9e-64 248.4 307 44.6
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 9.1e-64 248.1 310 45.5
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 9.1e-64 248.1 310 43.9
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 9.1e-64 248.1 311 45.0
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 9.1e-64 248.1 311 44.4
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 9.1e-64 248.1 311 44.4
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 9.1e-64 248.1 313 45.0
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 1.2e-63 247.7 310 45.2
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.2e-63 247.7 311 44.4
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 1.5e-63 247.3 311 44.7
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 1.5e-63 247.3 311 44.1
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 1.5e-63 247.3 313 44.1
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 2.0e-63 246.9 311 44.1
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 2.0e-63 246.9 305 44.9
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 2.0e-63 246.9 311 43.4
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 2.0e-63 246.9 311 43.7
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.0e-63 246.9 313 42.8
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 2.0e-63 246.9 311 43.7
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 2.6e-63 246.5 311 45.0
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 2.6e-63 246.5 311 43.7
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.6e-63 246.5 305 45.6
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 2.6e-63 246.5 311 44.4
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 3.4e-63 246.1 309 44.7
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 3.4e-63 246.1 314 45.5
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 4.5e-63 245.7 311 44.7
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 4.5e-63 245.7 311 43.4
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 4.5e-63 245.7 311 43.1
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 5.9e-63 245.4 312 43.9
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 7.7e-63 245.0 313 42.8
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.3e-62 244.2 309 44.7
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 1.3e-62 244.2 308 43.8
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 1.3e-62 244.2 311 43.4
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.7e-62 243.8 311 43.4
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.7e-62 243.8 312 43.6
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 1.7e-62 243.8 302 44.4
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 2.2e-62 243.4 312 43.3
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 2.2e-62 243.4 312 43.3
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 2.2e-62 243.4 316 43.0
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 2.2e-62 243.4 307 44.3
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.9e-62 243.0 311 42.8
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 2.9e-62 243.0 311 44.1
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 2.9e-62 243.0 323 42.7
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 3.8e-62 242.7 310 43.5
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 5.0e-62 242.3 313 42.5
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 6.5e-62 241.9 306 43.5
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 6.5e-62 241.9 313 41.5
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 8.5e-62 241.5 321 43.6
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 8.5e-62 241.5 338 42.0
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 8.5e-62 241.5 311 43.1
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.1e-61 241.1 311 43.4
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.4e-61 240.7 311 44.1
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.9e-61 240.4 311 43.1
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 1.9e-61 240.4 311 43.7
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 1.9e-61 240.4 313 42.8
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 3.2e-61 239.6 310 43.2
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 3.2e-61 239.6 311 43.7
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 3.2e-61 239.6 309 43.7
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 4.2e-61 239.2 311 44.1
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 4.2e-61 239.2 311 44.1
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 4.2e-61 239.2 311 42.4
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 4.2e-61 239.2 311 42.4
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 4.2e-61 239.2 310 42.6
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 7.2e-61 238.4 310 42.9
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 7.2e-61 238.4 311 44.1
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 7.2e-61 238.4 311 43.4
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 7.2e-61 238.4 312 43.9
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 9.4e-61 238.0 315 43.5
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 9.4e-61 238.0 310 42.3
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 9.4e-61 238.0 311 43.1
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.2e-60 237.7 311 43.7
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 1.6e-60 237.3 339 40.4
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.1e-60 236.9 311 42.8
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 2.7e-60 236.5 310 42.6
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 2.7e-60 236.5 308 43.5
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 3.6e-60 236.1 312 43.3
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 3.6e-60 236.1 339 41.0
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 4.6e-60 235.7 305 43.6
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 6.1e-60 235.3 311 43.1
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 7.9e-60 235.0 310 43.9
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 7.9e-60 235.0 310 43.9
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 7.9e-60 235.0 339 40.7
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.8e-59 233.8 309 43.0
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 3.0e-59 233.0 310 42.6
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 3.0e-59 233.0 305 41.0
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 3.9e-59 232.6 324 41.4
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 5.1e-59 232.3 311 43.1
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 6.7e-59 231.9 305 42.6
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 8.8e-59 231.5 311 42.8
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 1.5e-58 230.7 333 40.5
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 1.5e-58 230.7 312 42.0
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.0e-58 230.3 307 42.0
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 2.0e-58 230.3 320 41.6
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.6e-58 229.9 320 41.6
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 3.3e-58 229.6 308 42.9
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 3.3e-58 229.6 320 41.6
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 4.4e-58 229.2 320 41.6
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 4.4e-58 229.2 312 42.9
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.2e-57 226.9 320 41.6
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 1.1e-56 224.6 294 42.9
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 1.4e-56 224.2 307 42.7
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 5.3e-56 222.2 292 43.2
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 9.1e-56 221.5 291 45.7
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 1.5e-55 220.7 358 37.7
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 3.4e-55 219.5 291 42.3
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 4.5e-55 219.2 320 42.8
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.7e-54 217.2 292 41.8
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 2.2e-54 216.9 294 42.2
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 8.8e-51 204.9 360 38.9
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 1.1e-50 204.5 284 43.3
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 9.7e-50 201.4 310 40.0
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 9.1e-48 194.9 317 37.9
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 7.7e-47 191.8 277 40.8
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 2.8e-33 146.7 247 38.1
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 1.8e-32 144.1 294 32.7
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 7.0e-32 142.1 277 35.0
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.9e-30 136.7 195 40.5
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 1.4e-27 127.9 195 37.9
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 3.1e-24 116.7 432 26.9
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 3.8e-22 109.8 125 47.2
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.2e-20 104.8 96 51.0
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 1.2e-20 104.8 111 50.5
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 5.0e-14 82.8 95 45.3
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.9e-13 80.9 90 47.8
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.5e-13 80.5 78 52.6
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 6.2e-12 75.9 69 52.2
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 2.6e-10 70.5 279 25.1
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 2.3e-06 57.4 41 61.0


User provided reference genes

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