Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g21852 Chara braunii HOM05D006654 ORTHO05D008201 1.8e-116 422.5 208 100.0
Mapoly0061s0139 Marchantia polymorpha HOM05D006654 ORTHO05D008201 2.7e-72 275.8 161 82.0
arahy.Tifrunner.gnm1.ann1.653AWM Arachis hypogaea HOM05D006654 ORTHO05D008201 1.5e-70 270.0 161 78.9
arahy.Tifrunner.gnm1.ann1.S79YT6 Arachis hypogaea HOM05D006654 ORTHO05D008201 1.5e-70 270.0 161 78.9
Pp3c22_11190 Physcomitrium patens HOM05D006654 ORTHO05D008201 2.6e-70 269.2 161 80.1
Pp3c22_11201 Physcomitrium patens HOM05D006654 ORTHO05D008201 2.6e-70 269.2 161 80.1
Sc10g0010430 Simmondsia chinensis HOM05D006654 ORTHO05D008201 2.6e-70 269.2 161 78.9
Manes.06G118600 Manihot esculenta HOM05D006654 ORTHO05D008201 3.4e-70 268.9 161 78.3
QL10p003811 Quercus lobata HOM05D006654 ORTHO05D008201 3.4e-70 268.9 161 77.6
Manes.14G052100 Manihot esculenta HOM05D006654 ORTHO05D008201 4.4e-70 268.5 161 78.3
EL10As4g23406 Beta vulgaris HOM05D006654 ORTHO05D008201 5.7e-70 268.1 161 78.9
Dinv11162 Davidia involucrata HOM05D006654 ORTHO05D008201 5.7e-70 268.1 168 73.8
Oeu023486.1 Olea europaea HOM05D006654 ORTHO05D008201 5.7e-70 268.1 161 77.0
Thecc.03G127500 Theobroma cacao HOM05D006654 ORTHO05D008201 5.7e-70 268.1 161 78.3
Carub.0008s2414 Capsella rubella HOM05D006654 ORTHO05D008201 9.8e-70 267.3 161 78.3
CiPaw.12G042200 Carya illinoinensis HOM05D006654 ORTHO05D008201 9.8e-70 267.3 161 77.6
TWI23G1026 Tripterygium wilfordii HOM05D006654 ORTHO05D008201 9.8e-70 267.3 161 78.9
vmacro16672 Vaccinium macrocarpon HOM05D006654 ORTHO05D008201 9.8e-70 267.3 161 78.9
Atru.BG.190.p Acer truncatum HOM05D006654 ORTHO05D008201 1.3e-69 266.9 161 78.3
Aa31LG1G18600 Aethionema arabicum HOM05D006654 ORTHO05D008201 1.3e-69 266.9 161 78.3
GSVIVG01008527001 Vitis vinifera HOM05D006654 ORTHO05D008201 1.3e-69 266.9 161 77.6
ClCG03G003720 Citrullus lanatus HOM05D006654 ORTHO05D008201 1.7e-69 266.5 161 78.3
CsaV3_1G009610 Cucumis sativus L. HOM05D006654 ORTHO05D008201 1.7e-69 266.5 161 78.3
Thhalv10004858m.g Eutrema salsugineum HOM05D006654 ORTHO05D008201 1.7e-69 266.5 161 78.9
Gohir.A03G052100 Gossypium hirsutum HOM05D006654 ORTHO05D008201 1.7e-69 266.5 161 77.6
Gorai.003G121200 Gossypium raimondii HOM05D006654 ORTHO05D008201 1.7e-69 266.5 161 77.6
Rhsim12G0173900 Rhododendron simsii HOM05D006654 ORTHO05D008201 1.7e-69 266.5 161 78.3
SMO364G0616 Selaginella moellendorffii HOM05D006654 ORTHO05D008201 1.7e-69 266.5 161 77.0
Haze_07229 Corylus avellana HOM05D006654 ORTHO05D008201 2.2e-69 266.2 161 78.3
Pp3c18_15000 Physcomitrium patens HOM05D006654 ORTHO05D008201 2.2e-69 266.2 161 79.5
AL8G40500 Arabidopsis lyrata HOM05D006654 ORTHO05D008201 2.8e-69 265.8 161 77.6
CDE05G1175 Ceratophyllum demersum HOM05D006654 ORTHO05D008201 2.8e-69 265.8 161 77.6
RcHm_v2.0_Chr1g0314831 Rosa chinensis HOM05D006654 ORTHO05D008201 2.8e-69 265.8 161 77.6
BcaC01g02588 Brassica carinata HOM05D006654 ORTHO05D008201 3.7e-69 265.4 161 78.3
SEGI_01164 Sequoiadendron giganteum HOM05D006654 ORTHO05D008201 3.7e-69 265.4 161 77.6
AT5G63440 Arabidopsis thaliana HOM05D006654 ORTHO05D008201 4.8e-69 265.0 161 77.6
Oeu044257.1 Olea europaea HOM05D006654 ORTHO05D008201 4.8e-69 265.0 162 75.9
CSS0035351 Camellia sinensis var. sinensis HOM05D006654 ORTHO05D008201 6.3e-69 264.6 161 77.0
MBI07_g34629_MAGBIO Magnolia biondii HOM05D006654 ORTHO05D008201 6.3e-69 264.6 161 77.0
Phvul.007G001300 Phaseolus vulgaris HOM05D006654 ORTHO05D008201 6.3e-69 264.6 161 77.0
Sp2g26520 Schrenkiella parvula HOM05D006654 ORTHO05D008201 6.3e-69 264.6 161 77.6
AUR62029635 Chenopodium quinoa HOM05D006654 ORTHO05D008201 8.3e-69 264.2 161 77.0
ECA232G0809 Erigeron canadensis HOM05D006654 ORTHO05D008201 8.3e-69 264.2 161 77.0
Cc04_g10050 Coffea canephora HOM05D006654 ORTHO05D008201 1.1e-68 263.8 161 76.4
FAN03G1885 Fragaria x ananassa HOM05D006654 ORTHO05D008201 1.1e-68 263.8 161 77.0
HPP92_000346 Vanilla planifolia HOM05D006654 ORTHO05D008201 1.1e-68 263.8 161 75.8
Prupe.4G287600 Prunus persica HOM05D006654 ORTHO05D008201 1.4e-68 263.5 161 77.0
SGA_v2.0_scaffold161G37776 Striga asiatica HOM05D006654 ORTHO05D008201 1.8e-68 263.1 161 75.8
Actinidia08864 Actinidia chinensis HOM05D006654 ORTHO05D008201 2.4e-68 262.7 161 76.4
CARHR277290 Cardamine hirsuta HOM05D006654 ORTHO05D008201 2.4e-68 262.7 161 76.4
Cpa.g.sc13.133 Carica papaya HOM05D006654 ORTHO05D008201 2.4e-68 262.7 161 76.4
Zm00001eb305410 Zea mays HOM05D006654 ORTHO05D008201 2.4e-68 262.7 161 75.8
CAN.G352.15 Capsicum annuum HOM05D006654 ORTHO05D008201 3.1e-68 262.3 161 76.4
FAN01G0962 Fragaria x ananassa HOM05D006654 ORTHO05D008201 3.1e-68 262.3 161 76.4
FAN06G4528 Fragaria x ananassa HOM05D006654 ORTHO05D008201 3.1e-68 262.3 161 76.4
Lsat_1_v5_gn_4_76920 Lactuca sativa HOM05D006654 ORTHO05D008201 3.1e-68 262.3 161 75.8
Peaxi162Scf00089g00632 Petunia axillaris HOM05D006654 ORTHO05D008201 3.1e-68 262.3 161 76.4
PGSC0003DMG402015240 Solanum tuberosum HOM05D006654 ORTHO05D008201 3.1e-68 262.3 161 76.4
Aqoxy5G03402 Aquilegia oxysepala HOM05D006654 ORTHO05D008201 4.1e-68 261.9 161 76.4
TAR371G0211 Trochodendron aralioides HOM05D006654 ORTHO05D008201 4.1e-68 261.9 161 75.8
MD02G1316100 Malus domestica HOM05D006654 ORTHO05D008201 7.0e-68 261.2 161 75.8
Nitab4.5_0004750g0080 Nicotiana tabacum HOM05D006654 ORTHO05D008201 7.0e-68 261.2 161 75.8
THA.LOC104818189 Tarenaya hassleriana HOM05D006654 ORTHO05D008201 7.0e-68 261.2 161 76.4
FvH4_7g00630 Fragaria vesca HOM05D006654 ORTHO05D008201 9.1e-68 260.8 161 75.8
Glyma.20G249100 Glycine max HOM05D006654 ORTHO05D008201 9.1e-68 260.8 161 76.4
Hma1.2p1_0014F.1_g009560 Hydrangea macrophylla HOM05D006654 ORTHO05D008201 9.1e-68 260.8 161 76.4
Hma1.2p1_0014F.1_g009570 Hydrangea macrophylla HOM05D006654 ORTHO05D008201 9.1e-68 260.8 161 76.4
Lj5g0001059 Lotus japonicus HOM05D006654 ORTHO05D008201 9.1e-68 260.8 161 75.2
Migut.I00498 Erythranthe guttata HOM05D006654 ORTHO05D008201 1.2e-67 260.4 161 75.8
FAN10G2487 Fragaria x ananassa HOM05D006654 ORTHO05D008201 1.2e-67 260.4 161 75.8
Potri.012G096500 Populus trichocarpa HOM05D006654 ORTHO05D008201 1.2e-67 260.4 161 78.3
FAN01G2458 Fragaria x ananassa HOM05D006654 ORTHO05D008201 1.6e-67 260.0 161 75.2
HanXRQChr16g0497681 Helianthus annuus HOM05D006654 ORTHO05D008201 1.6e-67 260.0 162 75.9
MD07G1005800 Malus domestica HOM05D006654 ORTHO05D008201 1.6e-67 260.0 161 75.2
Os07g0295200 Oryza sativa ssp. japonica HOM05D006654 ORTHO05D008201 1.6e-67 260.0 161 75.8
CANSAT80G1342 Cannabis sativa HOM05D006654 ORTHO05D008201 2.0e-67 259.6 161 75.2
PGR083G1205 Punica granatum HOM05D006654 ORTHO05D008201 2.7e-67 259.2 161 77.0
Eucgr.F01379 Eucalyptus grandis HOM05D006654 ORTHO05D008201 1.0e-66 257.3 161 75.8
Nn4g22349 Nelumbo nucifera HOM05D006654 ORTHO05D008201 1.3e-66 256.9 161 75.8
Ca_11428_v3 Cicer arietinum L. HOM05D006654 ORTHO05D008201 2.3e-66 256.1 161 73.3
Potri.015G094300 Populus trichocarpa HOM05D006654 ORTHO05D008201 2.3e-66 256.1 161 77.0
Solyc03g111330.4 Solanum lycopersicum HOM05D006654 ORTHO05D008201 2.3e-66 256.1 161 75.2
Nitab4.5_0003282g0120 Nicotiana tabacum HOM05D006654 ORTHO05D008201 5.0e-66 255.0 161 74.5
PSO063G4350 Papaver somniferum HOM05D006654 ORTHO05D008201 8.6e-66 254.2 161 73.9
PSO782G1240 Papaver somniferum HOM05D006654 ORTHO05D008201 8.6e-66 254.2 161 73.9
Psat6g243960 Pisum sativum HOM05D006654 ORTHO05D008201 1.5e-65 253.4 160 73.8
TPR.G39480 Trifolium pratense HOM05D006654 ORTHO05D008201 1.5e-65 253.4 161 72.7
VMungo0720G2310 Vigna mungo HOM05D006654 ORTHO05D008201 1.9e-65 253.1 187 67.4
Medtr1g117000 Medicago truncatula HOM05D001235 ORTHO05D005684 5.5e-65 251.5 161 71.4
ATR0561G261 Amborella trichopoda HOM05D006654 ORTHO05D008201 2.1e-64 249.6 161 72.7
MELO3C002357.2 Cucumis melo HOM05D006654 ORTHO05D008201 2.6e-62 242.7 183 66.7
Duzib068G1280 Durio zibethinus HOM05D006654 ORTHO05D008201 9.2e-60 234.2 161 70.8
AagrBONN_evm.TU.Sc2ySwM_228.2755 Anthoceros agrestis HOM05D006654 ORTHO05D008201 5.2e-55 218.4 128 78.9
Lalb_Chr06g0164681 Lupinus albus HOM05D006654 ORTHO05D008201 3.3e-49 199.1 161 63.4
Nn3g16497 Nelumbo nucifera HOM05D006654 ORTHO05D008201 3.6e-48 195.7 127 74.0
Sopen03g030460 Solanum pennellii HOM05D006654 ORTHO05D008201 1.4e-47 193.7 126 72.2
COL.COLO4_28092 Corchorus olitorius HOM05D006654 ORTHO05D008201 8.9e-47 191.0 117 77.8
Ciclev10021838m.g Citrus clementina HOM05D006654 ORTHO05D008201 3.4e-46 189.1 117 76.1
C03p63160 Brassica napus HOM05D001045 ORTHO05D004836 4.4e-46 188.7 127 73.2
BolC3t18571H Brassica oleracea HOM05D001045 ORTHO05D004836 4.4e-46 188.7 127 73.2
Sed0016483 Sechium edule HOM05D006654 ORTHO05D008201 4.4e-46 188.7 117 77.8
A06p30050 Brassica napus HOM05D001045 ORTHO05D004836 5.8e-46 188.3 127 72.4
BraA06t25957Z Brassica rapa HOM05D001045 ORTHO05D004836 5.8e-46 188.3 127 72.4
Gohir.D03G115000 Gossypium hirsutum HOM05D006654 ORTHO05D008201 2.9e-45 186.0 129 69.8
Prupe.1G190000 Prunus persica HOM05D006654 ORTHO05D008201 2.9e-45 186.0 117 76.1
Lj9A478G90 Lonicera japonica HOM05D006654 ORTHO05D008201 4.9e-45 185.3 117 75.2
Sabra15G0115700 Salix brachista HOM05D006654 ORTHO05D008201 8.3e-45 184.5 122 75.4
Ca_29862_v3 Cicer arietinum L. HOM05D006654 ORTHO05D008201 1.2e-43 180.6 117 70.9
LjContig00075g0008356 Lotus japonicus HOM05D006654 ORTHO05D008201 2.2e-29 133.3 114 58.8
Hund10171 Selenicereus undatus HOM05D006654 ORTHO05D008201 6.4e-29 131.7 120 57.5
MSTRG.4601 Avicennia marina HOM05D006654 ORTHO05D008201 1.2e-27 127.5 74 79.7
AUR62025924 Chenopodium quinoa HOM05D006654 ORTHO05D008201 3.9e-26 122.5 74 77.0
SHI10786 Sapria himalayana HOM05D006654 ORTHO05D008201 1.1e-25 120.9 90 63.3
MCO06G092 Micromonas commoda HOM05D006654 ORTHO05D008201 3.3e-25 119.4 167 43.7
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 2.8e-24 116.3 80 67.5
Cre12.g485750 Chlamydomonas reinhardtii HOM05D006654 ORTHO05D008201 9.3e-20 101.3 164 32.9
C09p09330 Brassica napus HOM05D006654 ORTHO05D008201 3.5e-19 99.4 61 78.7
BolC9t53845H Brassica oleracea HOM05D006654 ORTHO05D008201 3.5e-19 99.4 61 78.7
PRCOL_00005389 Prasinoderma coloniale HOM05D006654 ORTHO05D008201 1.0e-18 97.8 178 34.8
BcaC04g23328 Brassica carinata HOM05D006654 ORTHO05D008201 3.3e-17 92.8 54 81.5
RcHm_v2.0_Chr7g0215371 Rosa chinensis HOM05D006654 ORTHO05D008201 4.6e-11 72.4 101 41.6
SalBow1G2859 Salvia bowleyana HOM05D006654 ORTHO05D008201 4.3e-09 65.9 37 83.8
SalBow1G7869 Salvia bowleyana HOM05D006654 ORTHO05D008201 4.3e-09 65.9 37 83.8
BcaB04g19916 Brassica carinata HOM05D006654 ORTHO05D008201 4.5e-06 55.8 30 86.7


User provided reference genes

Program Settings