Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 0.0e+00 1095.1 611 100.0
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 7.5e-86 322.4 392 47.4
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 3.6e-80 303.5 390 45.1
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 3.6e-80 303.5 390 45.1
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 6.2e-80 302.8 390 45.1
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 1.1e-79 302.0 403 42.4
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 1.1e-79 302.0 390 44.9
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 1.1e-79 302.0 390 44.4
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 2.3e-79 300.8 395 43.8
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 4.0e-79 300.1 395 43.8
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 2.6e-78 297.4 395 43.0
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 9.8e-78 295.4 390 42.6
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 1.3e-77 295.0 395 42.5
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 2.2e-77 294.3 397 43.6
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 2.9e-77 293.9 395 42.0
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.9e-76 291.2 389 44.0
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 5.4e-76 289.7 386 43.3
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 9.2e-76 288.9 386 43.3
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 3.5e-75 287.0 403 41.2
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 4.6e-75 286.6 386 43.8
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 4.6e-75 286.6 388 42.5
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 1.3e-74 285.0 389 41.6
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 1.3e-74 285.0 389 42.2
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.3e-74 285.0 383 43.3
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 1.3e-74 285.0 386 43.5
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 1.7e-74 284.6 404 41.3
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 1.7e-74 284.6 383 44.1
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 3.0e-74 283.9 403 41.9
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 6.6e-74 282.7 386 42.7
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 6.6e-74 282.7 386 44.3
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 6.6e-74 282.7 388 41.5
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 8.6e-74 282.3 406 41.1
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 1.1e-73 282.0 403 40.9
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 1.1e-73 282.0 403 40.9
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 1.1e-73 282.0 388 41.2
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 1.5e-73 281.6 405 42.0
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 1.9e-73 281.2 386 42.7
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 4.3e-73 280.0 403 40.7
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 4.3e-73 280.0 396 40.9
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 9.5e-73 278.9 386 41.7
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 1.2e-72 278.5 411 41.1
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 1.2e-72 278.5 406 41.6
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 1.6e-72 278.1 404 40.3
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 2.1e-72 277.7 403 40.7
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 3.6e-72 276.9 403 40.7
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 3.6e-72 276.9 388 42.5
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 6.2e-72 276.2 386 40.4
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 8.1e-72 275.8 386 41.2
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 1.4e-71 275.0 403 40.4
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 1.4e-71 275.0 410 42.4
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 1.8e-71 274.6 391 40.7
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 2.3e-71 274.2 391 42.7
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 4.0e-71 273.5 394 41.4
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 4.0e-71 273.5 396 42.4
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 5.2e-71 273.1 392 40.8
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 8.9e-71 272.3 386 39.9
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 2.0e-70 271.2 390 42.3
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 2.0e-70 271.2 395 41.3
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 2.0e-70 271.2 389 41.4
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 2.6e-70 270.8 388 41.2
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 3.4e-70 270.4 383 41.0
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 3.4e-70 270.4 388 40.7
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 3.4e-70 270.4 391 41.7
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 4.4e-70 270.0 391 40.7
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 4.4e-70 270.0 386 40.7
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 4.4e-70 270.0 391 41.9
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 9.9e-70 268.9 390 42.3
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 9.9e-70 268.9 408 40.2
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 2.9e-69 267.3 370 42.2
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 2.9e-69 267.3 392 39.8
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 3.7e-69 266.9 402 39.1
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 1.1e-68 265.4 385 39.5
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 1.4e-68 265.0 402 39.6
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 1.4e-68 265.0 402 39.6
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 2.4e-68 264.2 386 41.2
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 4.1e-68 263.5 403 39.5
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 6.0e-67 259.6 383 40.2
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 3.0e-66 257.3 388 40.5
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 6.6e-66 256.1 403 40.0
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 1.1e-65 255.4 386 38.3
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 6.8e-63 246.1 366 39.1
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 3.8e-61 240.4 334 43.4
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 7.1e-60 236.1 400 38.8
Cpa.g.sc2698.1 Carica papaya HOM05D003893 ORTHO05D005167 1.2e-59 235.3 174 65.5
CDE12G0573 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 2.7e-59 234.2 176 61.9
SMO364G0317 Selaginella moellendorffii HOM05D003893 ORTHO05D005167 3.9e-58 230.3 179 60.9
Os03g0100500 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 2.8e-56 224.2 178 59.0
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 1.4e-55 221.9 390 37.2
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 1.7e-53 214.9 389 37.5
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 1.7e-50 204.9 374 36.4
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 3.6e-48 197.2 389 35.5
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 1.2e-46 192.2 371 34.2
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 1.2e-43 182.2 152 56.6
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 6.0e-43 179.9 405 35.3
Rhsim11G0002000 Rhododendron simsii HOM05D003893 ORTHO05D005167 5.3e-39 166.8 137 61.3
VMungo0251G2254 Vigna mungo HOM05D003893 ORTHO05D005167 1.0e-37 162.5 104 68.3
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 3.2e-36 157.5 106 65.1
Cre15.g637350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 1.5e-30 138.7 151 45.0
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 9.3e-28 129.4 180 40.6
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 7.9e-27 126.3 354 28.8
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 5.1e-26 123.6 282 33.7
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 7.4e-25 119.8 286 32.5
CBR_g50064 Chara braunii HOM05D008989 ORTHO05D000937 2.8e-16 91.3 71 73.2
CBR_g4729 Chara braunii HOM05D001539 ORTHO05D000937 1.4e-15 89.0 70 71.4
Ah.07g199170 Amaranthus hybridus HOM05D003893 ORTHO05D005167 4.1e-15 87.4 54 72.2
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.6e-14 84.7 253 28.5
CBR_g29602 Chara braunii HOM05D001539 ORTHO05D000937 5.9e-14 83.6 72 68.1
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 1.3e-13 82.4 70 68.6
CBR_g12879 Chara braunii HOM05D001539 ORTHO05D000937 6.5e-13 80.1 80 63.8
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 5.1e-10 70.5 116 32.8
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 2.8e-08 64.7 99 32.3
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 4.1e-07 60.8 143 28.0


User provided reference genes

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