Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g20284 Chara braunii HOM05D007638 ORTHO05D009805 0.0e+00 1357.8 704 100.0
SEGI_06661 Sequoiadendron giganteum HOM05D007638 ORTHO05D009805 9.2e-96 355.5 321 50.2
Pp3c9_14850 Physcomitrium patens HOM05D007638 ORTHO05D009805 6.0e-87 326.2 320 46.9
Gohir.D09G190600 Gossypium hirsutum HOM05D007638 ORTHO05D009805 1.1e-75 288.9 318 41.8
Gorai.006G213300 Gossypium raimondii HOM05D007638 ORTHO05D009805 2.4e-75 287.7 318 41.5
Lj4g0022413 Lotus japonicus HOM05D007638 ORTHO05D009805 1.2e-74 285.4 369 39.3
Gohir.A09G196000 Gossypium hirsutum HOM05D007638 ORTHO05D009805 7.6e-74 282.7 318 41.2
HanXRQChr17g0549771 Helianthus annuus HOM05D007638 ORTHO05D009805 9.9e-74 282.3 362 39.0
Ca_21958_v3 Cicer arietinum L. HOM05D007638 ORTHO05D009805 1.3e-73 282.0 394 37.1
Prupe.5G071400 Prunus persica HOM05D007638 ORTHO05D009805 1.3e-73 282.0 340 39.4
CiPaw.12G109000 Carya illinoinensis HOM05D007638 ORTHO05D009805 1.7e-73 281.6 318 40.9
Eucgr.D02067 Eucalyptus grandis HOM05D007638 ORTHO05D009805 2.2e-73 281.2 327 40.1
QL12p012553 Quercus lobata HOM05D007638 ORTHO05D009805 2.2e-73 281.2 340 39.7
Solyc08g078750.4 Solanum lycopersicum HOM05D007638 ORTHO05D009805 4.9e-73 280.0 358 38.0
TWI15G0131 Tripterygium wilfordii HOM05D007638 ORTHO05D009805 4.9e-73 280.0 342 38.6
Dinv39130 Davidia involucrata HOM05D007638 ORTHO05D009805 6.4e-73 279.6 320 41.2
GSVIVG01001312001 Vitis vinifera HOM05D007638 ORTHO05D009805 6.4e-73 279.6 348 39.9
ATR1153G083 Amborella trichopoda HOM05D007638 ORTHO05D009805 1.1e-72 278.9 345 41.2
Sopen08g027220 Solanum pennellii HOM05D007638 ORTHO05D009805 1.4e-72 278.5 358 37.4
Thecc.03G253300 Theobroma cacao HOM05D007638 ORTHO05D009805 1.4e-72 278.5 375 36.3
Hma1.2p1_2238F.1_g317800 Hydrangea macrophylla HOM05D007638 ORTHO05D009805 3.2e-72 277.3 323 40.2
TAR636G1390 Trochodendron aralioides HOM05D007638 ORTHO05D009805 3.2e-72 277.3 318 39.9
CAN.G1218.20 Capsicum annuum HOM05D007638 ORTHO05D009805 4.2e-72 276.9 318 39.6
TPR.G37700 Trifolium pratense HOM05D007638 ORTHO05D009805 4.2e-72 276.9 322 41.0
EL10Ac5g13054 Beta vulgaris HOM05D007638 ORTHO05D009805 9.3e-72 275.8 320 40.9
Lalb_Chr16g0389341 Lupinus albus HOM05D007638 ORTHO05D009805 2.1e-71 274.6 318 41.2
Glyma.05G058500 Glycine max HOM05D007638 ORTHO05D009805 2.7e-71 274.2 319 40.4
AUR62007504 Chenopodium quinoa HOM05D007638 ORTHO05D009805 6.0e-71 273.1 372 37.9
Cfa012740 Carpinus fangiana HOM05D007638 ORTHO05D009805 1.0e-70 272.3 377 36.9
Nn1g01039 Nelumbo nucifera HOM05D007638 ORTHO05D009805 1.0e-70 272.3 320 40.3
PSO781G0038 Papaver somniferum HOM05D007638 ORTHO05D009805 1.0e-70 272.3 344 39.8
CANSAT21G1304 Cannabis sativa HOM05D007638 ORTHO05D009805 1.3e-70 271.9 376 37.2
Lsat_1_v5_gn_3_541 Lactuca sativa HOM05D007638 ORTHO05D009805 1.8e-70 271.6 336 37.5
MSTRG.25529 Avicennia marina HOM05D007638 ORTHO05D009805 3.0e-70 270.8 385 36.1
Oeu017018.1 Olea europaea HOM05D007638 ORTHO05D009805 3.0e-70 270.8 341 37.0
Ah.02g116770 Amaranthus hybridus HOM05D007638 ORTHO05D009805 3.9e-70 270.4 383 37.6
Sc07g0009320 Simmondsia chinensis HOM05D007638 ORTHO05D009805 3.9e-70 270.4 371 37.7
MD06G1060400 Malus domestica HOM05D007638 ORTHO05D009805 6.7e-70 269.6 346 38.4
Potri.003G110600 Populus trichocarpa HOM05D007638 ORTHO05D009805 6.7e-70 269.6 360 38.3
Atru.chr9.1327 Acer truncatum HOM05D007638 ORTHO05D009805 1.9e-69 268.1 342 37.7
PSO541G0423 Papaver somniferum HOM05D007638 ORTHO05D009805 1.9e-69 268.1 333 40.2
Cc08_g12610 Coffea canephora HOM05D007638 ORTHO05D009805 3.3e-69 267.3 320 40.3
Rhsim09G0039100 Rhododendron simsii HOM05D007638 ORTHO05D009805 3.3e-69 267.3 326 40.2
arahy.Tifrunner.gnm1.ann1.UY0NCU Arachis hypogaea HOM05D007638 ORTHO05D009805 7.4e-69 266.2 319 40.4
RcHm_v2.0_Chr7g0202991 Rosa chinensis HOM05D007638 ORTHO05D009805 1.6e-68 265.0 337 37.7
THA.LOC104812781 Tarenaya hassleriana HOM05D007638 ORTHO05D009805 2.1e-68 264.6 387 36.4
FvH4_5g18700 Fragaria vesca HOM05D007638 ORTHO05D009805 4.8e-68 263.5 352 36.4
Sed0016401 Sechium edule HOM05D007638 ORTHO05D009805 1.1e-67 262.3 329 37.7
Hund14529 Selenicereus undatus HOM05D007638 ORTHO05D009805 1.4e-67 261.9 323 38.4
CsaV3_5G004170 Cucumis sativus L. HOM05D007638 ORTHO05D009805 1.5e-66 258.5 348 35.9
Peaxi162Scf00002g00171 Petunia axillaris HOM05D007638 ORTHO05D009805 1.5e-66 258.5 338 37.6
Sabra03G0076700 Salix brachista HOM05D007638 ORTHO05D009805 2.6e-66 257.7 360 37.2
Migut.A00967 Erythranthe guttata HOM05D007638 ORTHO05D009805 3.4e-66 257.3 319 37.9
Ciclev10020230m.g Citrus clementina HOM05D007638 ORTHO05D009805 5.8e-66 256.5 318 37.7
Manes.02G038700 Manihot esculenta HOM05D007638 ORTHO05D009805 1.3e-65 255.4 408 35.3
Aqoxy7G00749 Aquilegia oxysepala HOM05D007638 ORTHO05D009805 3.2e-64 250.8 284 41.9
AUR62039957 Chenopodium quinoa HOM05D007638 ORTHO05D009805 1.6e-63 248.4 296 39.2
Aa31LG2G12650 Aethionema arabicum HOM05D007638 ORTHO05D009805 3.3e-61 240.7 318 38.7
arahy.Tifrunner.gnm1.ann1.E4IRCP Arachis hypogaea HOM05D007638 ORTHO05D009805 1.6e-60 238.4 283 40.3
Hma1.2p1_3173F.1_g333580 Hydrangea macrophylla HOM05D007638 ORTHO05D009805 3.1e-59 234.2 365 34.8
Sp7g15100 Schrenkiella parvula HOM05D007638 ORTHO05D009805 4.1e-59 233.8 317 36.0
Psat4g071600 Pisum sativum HOM05D007638 ORTHO05D009805 9.0e-59 232.6 314 37.6
FAN18G0664 Fragaria x ananassa HOM05D007638 ORTHO05D009805 4.5e-58 230.3 317 36.6
CDE11G1220 Ceratophyllum demersum HOM05D007638 ORTHO05D009805 1.3e-57 228.8 354 35.3
FAN13G2113 Fragaria x ananassa HOM05D007638 ORTHO05D009805 1.4e-56 225.3 317 36.3
SGA_v2.0_scaffold120G32873 Striga asiatica HOM05D007638 ORTHO05D009805 1.9e-56 224.9 391 32.2
DCAR_008488 Daucus carota HOM05D007638 ORTHO05D009805 3.2e-56 224.2 322 35.4
PGR031G3001 Punica granatum HOM05D007638 ORTHO05D009805 9.3e-56 222.6 374 35.0
FAN08G1927 Fragaria x ananassa HOM05D007638 ORTHO05D009805 4.6e-55 220.3 324 35.8
AagrBONN_evm.TU.Sc2ySwM_228.4592 Anthoceros agrestis HOM05D007638 ORTHO05D009805 6.1e-55 219.9 417 36.0
Nitab4.5_0008481g0020 Nicotiana tabacum HOM05D007638 ORTHO05D009805 1.1e-51 209.1 413 32.2
Nitab4.5_0000312g0180 Nicotiana tabacum HOM05D007638 ORTHO05D009805 5.9e-50 203.4 317 36.6
PGSC0003DMG400004754 Solanum tuberosum HOM05D007638 ORTHO05D009805 4.4e-37 160.6 239 35.6
Duzib084G1003 Durio zibethinus HOM05D007638 ORTHO05D009805 1.3e-36 159.1 206 39.8
vmacro00554 Vaccinium macrocarpon HOM05D007638 ORTHO05D009805 6.3e-36 156.8 322 29.8
Eucgr.D02064 Eucalyptus grandis HOM05D007638 ORTHO05D009805 2.2e-33 148.3 209 35.9
ClCG01G003990 Citrullus lanatus HOM05D007638 ORTHO05D009805 1.1e-32 146.0 383 26.4
Actinidia02124 Actinidia chinensis HOM05D007638 ORTHO05D009805 1.1e-27 129.4 241 34.0
FAN04G2384 Fragaria x ananassa HOM05D007638 ORTHO05D009805 1.3e-25 122.5 194 32.0
DCAR_008487 Daucus carota HOM05D007638 ORTHO05D009805 6.5e-25 120.2 179 38.0
Cpa.g.sc29.142 Carica papaya HOM05D007638 ORTHO05D009805 9.8e-21 106.3 177 35.6
CSS0011551 Camellia sinensis var. sinensis HOM05D007638 ORTHO05D009805 2.9e-17 94.7 97 39.2
unitig_0.g181 Utricularia gibba HOM05D000032 ORTHO05D009383 7.5e-13 80.1 100 41.0
Glyma.02G068300 Glycine max HOM05D000032 ORTHO05D009383 6.3e-12 77.0 67 55.2
SGA_v2.0_scaffold8G04635 Striga asiatica HOM05D000032 ORTHO05D009383 6.3e-12 77.0 68 51.5
Migut.D00539 Erythranthe guttata HOM05D000032 ORTHO05D009383 8.3e-12 76.6 71 52.1
Lalb_Chr03g0043781 Lupinus albus HOM05D000032 ORTHO05D009383 8.3e-12 76.6 63 54.0
FAN02G2103 Fragaria x ananassa HOM05D000032 ORTHO05D009383 1.4e-11 75.9 75 46.7
FAN05G0348 Fragaria x ananassa HOM05D000032 ORTHO05D009383 1.4e-11 75.9 75 46.7
Glyma.16G149800 Glycine max HOM05D000032 ORTHO05D009383 2.4e-11 75.1 67 53.7
FvH4_6g35850 Fragaria vesca HOM05D000032 ORTHO05D009383 3.1e-11 74.7 75 45.3
FAN14G3162 Fragaria x ananassa HOM05D000032 ORTHO05D009383 3.1e-11 74.7 75 45.3
FAN14G3671 Fragaria x ananassa HOM05D000032 ORTHO05D009383 3.1e-11 74.7 75 45.3
Ah.15g094020 Amaranthus hybridus HOM05D000032 ORTHO05D009383 4.1e-11 74.3 72 48.6
Cpa.g.sc17.215 Carica papaya HOM05D000032 ORTHO05D009383 7.0e-11 73.6 54 55.6
RcHm_v2.0_Chr2g0147891 Rosa chinensis HOM05D000032 ORTHO05D009383 9.1e-11 73.2 57 56.1
Aqoxy7G03583 Aquilegia oxysepala HOM05D000032 ORTHO05D009383 1.2e-10 72.8 67 50.7
HanXRQChr14g0453351 Helianthus annuus HOM05D000032 ORTHO05D009383 1.2e-10 72.8 54 53.7
Lsat_1_v5_gn_2_101321 Lactuca sativa HOM05D000032 ORTHO05D009383 1.2e-10 72.8 86 40.7
Eucgr.K02338 Eucalyptus grandis HOM05D000032 ORTHO05D009383 1.6e-10 72.4 68 41.2
Eucgr.L03255 Eucalyptus grandis HOM05D000032 ORTHO05D009383 1.6e-10 72.4 68 41.2
Potri.014G140100 Populus trichocarpa HOM05D000032 ORTHO05D009383 3.5e-10 71.2 65 46.2
VMungo0464G1688 Vigna mungo HOM05D000032 ORTHO05D009383 3.5e-10 71.2 63 50.8
MSTRG.18394 Avicennia marina HOM05D000032 ORTHO05D009383 4.5e-10 70.9 60 53.3
EL10Ac7g17945 Beta vulgaris HOM05D000032 ORTHO05D009383 4.5e-10 70.9 75 49.3
CARHR074860 Cardamine hirsuta HOM05D000032 ORTHO05D009383 4.5e-10 70.9 48 62.5
PSO384G0785 Papaver somniferum HOM05D000032 ORTHO05D009383 4.5e-10 70.9 50 58.0
SHI50144 Sapria himalayana HOM05D000032 ORTHO05D009383 4.5e-10 70.9 58 55.2
THA.LOC104823368 Tarenaya hassleriana HOM05D000032 ORTHO05D009383 4.5e-10 70.9 65 46.2
AagrBONN_evm.TU.Sc2ySwM_369.192 Anthoceros agrestis HOM05D000032 ORTHO05D009383 5.9e-10 70.5 61 54.1
Mapoly0135s0036 Marchantia polymorpha HOM05D000032 ORTHO05D009383 5.9e-10 70.5 81 43.2
PGSC0003DMG400032150 Solanum tuberosum HOM05D000032 ORTHO05D009383 5.9e-10 70.5 67 47.8
arahy.Tifrunner.gnm1.ann1.BLPY9G Arachis hypogaea HOM05D007638 ORTHO05D009383 7.7e-10 70.1 73 49.3
Cc01_g03330 Coffea canephora HOM05D000032 ORTHO05D009383 7.7e-10 70.1 61 52.5
Medtr6g033070 Medicago truncatula HOM05D000032 ORTHO05D009383 7.7e-10 70.1 59 50.8
Sc14g0008440 Simmondsia chinensis HOM05D000032 ORTHO05D009383 7.7e-10 70.1 59 54.2
TPR.G6050 Trifolium pratense HOM05D000032 ORTHO05D009383 7.7e-10 70.1 60 55.0
Ciclev10017882m.g Citrus clementina HOM05D000032 ORTHO05D009383 1.0e-09 69.7 51 58.8
Manes.04G096700 Manihot esculenta HOM05D000032 ORTHO05D009383 1.0e-09 69.7 68 45.6
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 1.0e-09 69.7 61 45.9
vmacro21760 Vaccinium macrocarpon HOM05D000032 ORTHO05D009383 1.0e-09 69.7 83 43.4
arahy.Tifrunner.gnm1.ann1.8UB6M3 Arachis hypogaea HOM05D000032 ORTHO05D009383 1.3e-09 69.3 72 47.2
MELO3C014755.2 Cucumis melo HOM05D000032 ORTHO05D009383 1.3e-09 69.3 72 44.4
Nn3g18407 Nelumbo nucifera HOM05D000032 ORTHO05D009383 1.3e-09 69.3 60 53.3
Peaxi162Scf00192g00012 Petunia axillaris HOM05D000032 ORTHO05D009383 1.3e-09 69.3 59 52.5
TWI32G0219 Tripterygium wilfordii HOM05D000032 ORTHO05D009383 1.3e-09 69.3 55 49.1
CSS0028588 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D009383 1.7e-09 68.9 54 55.6
AUR62001157 Chenopodium quinoa HOM05D000032 ORTHO05D009383 1.7e-09 68.9 44 63.6
AUR62016519 Chenopodium quinoa HOM05D000032 ORTHO05D009383 1.7e-09 68.9 44 63.6
Pp3c8_12050 Physcomitrium patens HOM05D000032 ORTHO05D009383 1.7e-09 68.9 64 51.6
Prupe.3G315400 Prunus persica HOM05D001005 ORTHO05D000836 1.7e-09 68.9 55 50.9
Sopen01g002340 Solanum pennellii HOM05D000032 ORTHO05D009383 1.7e-09 68.9 67 46.3
Ca_04506_v3 Cicer arietinum L. HOM05D000032 ORTHO05D009383 2.3e-09 68.6 62 50.0
Lj3g0015614 Lotus japonicus HOM05D000032 ORTHO05D009383 2.3e-09 68.6 63 50.8
AL3G10020 Arabidopsis lyrata HOM05D000032 ORTHO05D009383 2.9e-09 68.2 51 56.9
CSS0019503 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D009383 2.9e-09 68.2 47 59.6
ClCG05G012450 Citrullus lanatus HOM05D000032 ORTHO05D009383 2.9e-09 68.2 44 59.1
Hma1.2p1_0098F.1_g048240 Hydrangea macrophylla HOM05D000032 ORTHO05D009383 2.9e-09 68.2 47 57.4
Psat1g014560 Pisum sativum HOM05D000032 ORTHO05D009383 2.9e-09 68.2 47 59.6
Rhsim13G0227500 Rhododendron simsii HOM05D006358 ORTHO05D009383 2.9e-09 68.2 54 55.6
Solyc01g006340.3 Solanum lycopersicum HOM05D000032 ORTHO05D009383 2.9e-09 68.2 59 50.8
CDE07G0397 Ceratophyllum demersum HOM05D000032 ORTHO05D009383 3.8e-09 67.8 44 59.1
FAN09G2555 Fragaria x ananassa HOM05D000032 ORTHO05D009383 3.8e-09 67.8 75 42.7
Lj1A470G20 Lonicera japonica HOM05D000032 ORTHO05D009383 3.8e-09 67.8 67 43.3
Lj1A478G35 Lonicera japonica HOM05D000032 ORTHO05D009383 3.8e-09 67.8 67 43.3
MBI11_g17278_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D009383 3.8e-09 67.8 53 56.6
DCAR_008449 Daucus carota HOM05D000032 ORTHO05D009383 5.0e-09 67.4 72 47.2
Gohir.A10G069700 Gossypium hirsutum HOM05D000032 ORTHO05D009383 5.0e-09 67.4 80 45.0
Aa31LG5G11250 Aethionema arabicum HOM05D000032 ORTHO05D009383 6.6e-09 67.0 60 45.0
Nitab4.5_0003436g0100 Nicotiana tabacum HOM05D000032 ORTHO05D009383 6.6e-09 67.0 59 50.8
PGR044G2709 Punica granatum HOM05D000032 ORTHO05D009383 6.6e-09 67.0 85 41.2
Zm00001eb235630 Zea mays HOM05D000032 ORTHO05D009383 6.6e-09 67.0 53 52.8
CAN.G140.9 Capsicum annuum HOM05D000032 ORTHO05D009383 8.6e-09 66.6 56 53.6
Gohir.D10G081800 Gossypium hirsutum HOM05D000032 ORTHO05D009383 8.6e-09 66.6 78 46.2
PSO339G1569 Papaver somniferum HOM05D000032 ORTHO05D009383 8.6e-09 66.6 61 50.8
QL02p068178 Quercus lobata HOM05D000032 ORTHO05D009383 8.6e-09 66.6 68 50.0
GSVIVG01032945001 Vitis vinifera HOM05D007638 ORTHO05D009383 8.6e-09 66.6 49 57.1
Atru.chr12.440 Acer truncatum HOM05D000032 ORTHO05D009383 1.1e-08 66.2 53 56.6
Duzib187G1127 Durio zibethinus HOM05D000032 ORTHO05D009383 1.1e-08 66.2 107 35.5
MD17G1003800 Malus domestica HOM05D000032 ORTHO05D009383 1.1e-08 66.2 57 50.9
Sp3g00020 Schrenkiella parvula HOM05D000032 ORTHO05D009383 1.1e-08 66.2 52 50.0
TAR633G1362 Trochodendron aralioides HOM05D000032 ORTHO05D009383 1.1e-08 66.2 48 58.3
CsaV3_3G020080 Cucumis sativus L. HOM05D000032 ORTHO05D009383 1.9e-08 65.5 110 35.5
Cfa010055 Carpinus fangiana HOM05D001005 ORTHO05D000836 2.5e-08 65.1 64 45.3
ECA238G2389 Erigeron canadensis HOM05D000032 ORTHO05D009383 2.5e-08 65.1 85 40.0
arahy.Tifrunner.gnm1.ann1.U3NDHF Arachis hypogaea HOM05D000032 ORTHO05D009383 3.3e-08 64.7 65 46.2
AT3G02065 Arabidopsis thaliana HOM05D000032 ORTHO05D009383 4.3e-08 64.3 62 48.4
CiPaw.14G093500 Carya illinoinensis HOM05D000032 ORTHO05D009383 4.3e-08 64.3 52 51.9
CBR_g3873 Chara braunii HOM05D000032 ORTHO05D009383 4.3e-08 64.3 72 45.8
ATR0824G065 Amborella trichopoda HOM05D000032 ORTHO05D009383 9.5e-08 63.2 43 60.5
Gorai.011G088700 Gossypium raimondii HOM05D000032 ORTHO05D009383 1.2e-07 62.8 77 42.9
Thecc.04G052100 Theobroma cacao HOM05D000032 ORTHO05D009383 2.1e-07 62.0 77 40.3
Carub.0003s0002 Capsella rubella HOM05D000032 ORTHO05D009383 2.8e-07 61.6 49 53.1
Thhalv10020567m.g Eutrema salsugineum HOM05D000032 ORTHO05D009383 2.8e-07 61.6 48 47.9
EL10Ac9g22788 Beta vulgaris HOM05D000032 ORTHO05D009383 1.4e-06 59.3 234 26.5
COL.COLO4_13406 Corchorus olitorius HOM05D000032 ORTHO05D009383 2.3e-06 58.5 77 39.0
SMO201G0222 Selaginella moellendorffii HOM05D000032 ORTHO05D009383 8.9e-06 56.6 41 56.1


User provided reference genes

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