Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 1.1e-237 826.2 428 100.0
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 2.2e-68 263.8 403 40.0
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 6.5e-68 262.3 383 40.2
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.4e-67 261.2 374 41.4
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.9e-67 260.8 373 42.9
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 7.1e-67 258.8 371 42.9
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 7.1e-67 258.8 376 41.5
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.2e-66 258.1 375 42.7
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 1.6e-66 257.7 371 43.1
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.6e-66 257.7 379 42.0
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 1.6e-66 257.7 375 42.4
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.6e-66 257.7 375 41.9
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 2.1e-66 257.3 371 42.9
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.1e-66 257.3 372 42.5
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 2.7e-66 256.9 375 41.3
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 2.7e-66 256.9 371 42.0
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 3.5e-66 256.5 383 42.0
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 6.1e-66 255.8 375 41.3
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 6.1e-66 255.8 372 42.5
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 7.9e-66 255.4 328 44.2
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.0e-65 255.0 375 41.9
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.0e-65 255.0 375 41.9
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 1.3e-65 254.6 374 41.7
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 1.3e-65 254.6 372 42.5
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.8e-65 254.2 391 40.7
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 1.8e-65 254.2 376 42.0
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.8e-65 254.2 375 41.6
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 2.3e-65 253.8 376 42.0
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 2.3e-65 253.8 376 41.2
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 2.3e-65 253.8 387 40.1
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.3e-65 253.8 375 42.1
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 3.0e-65 253.4 376 42.0
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 3.0e-65 253.4 390 40.5
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 3.0e-65 253.4 374 41.4
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 3.0e-65 253.4 375 41.9
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 3.9e-65 253.1 384 41.1
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 5.1e-65 252.7 372 42.5
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 5.1e-65 252.7 375 42.1
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 5.1e-65 252.7 375 42.4
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 5.1e-65 252.7 384 40.1
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 5.1e-65 252.7 372 41.9
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 5.1e-65 252.7 387 41.9
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 6.7e-65 252.3 375 43.2
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 8.7e-65 251.9 383 41.3
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 1.5e-64 251.1 372 42.7
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.5e-64 251.1 370 41.9
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.9e-64 250.8 375 40.8
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 1.9e-64 250.8 375 41.9
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.9e-64 250.8 385 40.3
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.9e-64 250.8 407 39.8
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.9e-64 250.8 375 42.1
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.9e-64 250.8 371 42.6
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 2.5e-64 250.4 379 41.7
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 2.5e-64 250.4 379 41.2
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 2.5e-64 250.4 405 41.2
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 3.3e-64 250.0 376 42.3
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 4.3e-64 249.6 323 46.1
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 4.3e-64 249.6 374 42.0
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 4.3e-64 249.6 375 40.5
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 5.7e-64 249.2 375 41.3
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 5.7e-64 249.2 389 40.9
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 7.4e-64 248.8 380 40.5
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 7.4e-64 248.8 372 41.7
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 9.7e-64 248.4 371 42.0
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 9.7e-64 248.4 371 42.0
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 9.7e-64 248.4 370 41.9
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.3e-63 248.1 398 39.9
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 1.3e-63 248.1 376 42.0
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.3e-63 248.1 371 41.0
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 1.3e-63 248.1 372 41.7
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.6e-63 247.7 376 41.0
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.2e-63 247.3 390 40.5
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 3.7e-63 246.5 371 41.2
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 3.7e-63 246.5 371 41.0
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 6.3e-63 245.7 371 41.2
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 8.2e-63 245.4 380 40.5
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.4e-62 244.6 375 40.3
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.8e-62 244.2 379 40.1
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.8e-62 244.2 376 39.6
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 2.4e-62 243.8 373 41.0
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 3.1e-62 243.4 373 42.1
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.1e-62 243.4 371 41.5
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 4.1e-62 243.0 371 40.2
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 4.1e-62 243.0 371 40.4
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 5.3e-62 242.7 371 41.2
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 5.3e-62 242.7 375 40.8
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 5.3e-62 242.7 373 41.6
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 9.0e-62 241.9 379 41.4
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 1.2e-61 241.5 371 40.7
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 2.0e-61 240.7 375 41.3
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 2.0e-61 240.7 373 41.6
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 2.0e-61 240.7 371 39.9
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 2.0e-61 240.7 406 38.9
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 2.6e-61 240.4 378 41.5
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 3.4e-61 240.0 371 40.4
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 3.4e-61 240.0 377 39.5
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 5.9e-61 239.2 374 40.6
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 7.7e-61 238.8 375 40.5
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 1.0e-60 238.4 371 39.9
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.3e-60 238.0 359 41.2
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.3e-60 238.0 390 40.5
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.3e-60 238.0 372 39.8
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.7e-60 237.7 380 40.8
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 2.2e-60 237.3 375 40.5
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 3.8e-60 236.5 402 39.3
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 6.5e-60 235.7 369 41.5
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 6.5e-60 235.7 376 40.7
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 8.5e-60 235.3 375 40.3
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 8.5e-60 235.3 378 40.7
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 1.1e-59 235.0 359 40.4
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 1.1e-59 235.0 372 39.2
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.4e-59 234.6 375 39.2
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.4e-59 234.6 372 40.6
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 1.4e-59 234.6 417 38.6
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 2.5e-59 233.8 365 41.4
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.5e-59 233.8 371 40.2
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 7.2e-59 232.3 371 39.9
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 7.2e-59 232.3 369 39.3
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.2e-58 231.5 368 40.8
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 2.7e-58 230.3 374 39.0
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 2.3e-57 227.3 388 39.2
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 5.1e-57 226.1 406 37.9
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 8.8e-57 225.3 285 45.6
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 9.7e-56 221.9 371 39.6
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.2e-55 220.7 359 39.6
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 2.8e-55 220.3 286 43.7
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 1.1e-54 218.4 373 39.7
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 2.4e-54 217.2 395 37.5
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 5.3e-54 216.1 333 39.6
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 4.5e-53 213.0 288 43.8
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.4e-51 208.0 361 38.8
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 5.7e-48 196.1 371 35.6
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 1.3e-47 194.9 227 46.7
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 8.2e-47 192.2 374 36.1
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.1e-46 191.8 195 52.3
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 3.1e-46 190.3 294 40.5
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 9.1e-46 188.7 336 39.0
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 1.2e-45 188.3 251 45.4
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 7.2e-43 179.1 231 43.7
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.0e-40 171.0 227 41.4
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 7.4e-40 169.1 574 26.8
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 4.8e-39 166.4 172 51.7
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 1.3e-36 158.3 304 36.8
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 3.8e-36 156.8 227 44.5
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 9.4e-35 152.1 280 35.7
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.0e-32 144.4 203 39.4
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 2.0e-32 144.4 299 35.1
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 3.4e-32 143.7 416 30.5
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 8.3e-31 139.0 184 41.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.7e-28 131.3 323 32.2
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 1.9e-27 127.9 306 32.4
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 3.0e-25 120.6 132 48.5
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.3e-23 115.2 186 39.8
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 5.5e-19 99.8 175 40.0
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 6.1e-18 96.3 186 38.7
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 3.4e-16 90.5 149 35.6
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 5.0e-12 76.6 62 59.7
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.1e-11 75.5 111 44.1
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.8e-09 68.2 140 31.4
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 4.9e-07 60.1 57 52.6
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 8.3e-07 59.3 137 35.0


User provided reference genes

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