Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 4.8e-219 764.6 508 100.0
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 3.9e-96 356.3 513 45.0
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 6.2e-94 349.0 502 45.2
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 5.3e-93 345.9 523 47.2
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 6.9e-93 345.5 506 43.9
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 6.9e-93 345.5 507 44.4
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 1.2e-92 344.7 545 42.4
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 4.5e-92 342.8 518 43.2
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 7.6e-92 342.0 511 44.2
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 7.6e-92 342.0 386 52.6
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.3e-91 341.3 381 52.2
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 2.9e-91 340.1 525 45.5
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 2.9e-91 340.1 507 44.6
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 1.9e-90 337.4 382 52.6
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 2.5e-90 337.0 508 44.1
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 4.2e-90 336.3 504 45.6
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 7.1e-90 335.5 388 53.1
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 1.6e-89 334.3 510 43.5
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 2.1e-89 334.0 505 44.0
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 3.5e-89 333.2 381 51.7
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 3.5e-89 333.2 517 44.7
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 3.5e-89 333.2 390 50.5
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 4.6e-89 332.8 504 44.0
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.6e-89 332.8 514 43.6
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 4.6e-89 332.8 380 50.5
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 4.6e-89 332.8 517 44.5
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 4.6e-89 332.8 502 42.4
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 1.3e-88 331.3 525 43.6
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.3e-88 331.3 500 43.4
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.3e-88 331.3 307 58.6
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.3e-88 331.3 504 43.8
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 1.3e-88 331.3 514 43.8
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.8e-88 330.9 514 44.0
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 1.8e-88 330.9 519 44.5
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.3e-88 330.5 506 43.9
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 3.0e-88 330.1 380 51.3
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 3.0e-88 330.1 385 51.2
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 3.0e-88 330.1 385 50.1
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 3.9e-88 329.7 505 42.8
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 3.9e-88 329.7 504 44.8
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 5.1e-88 329.3 510 43.3
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 6.7e-88 328.9 513 43.7
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 8.7e-88 328.6 514 43.0
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 1.1e-87 328.2 522 43.5
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 1.1e-87 328.2 515 43.7
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.1e-87 328.2 515 43.7
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 1.1e-87 328.2 389 50.1
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 1.1e-87 328.2 532 43.4
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.5e-87 327.8 515 43.7
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 1.9e-87 327.4 513 43.1
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.5e-87 327.0 515 43.5
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 3.3e-87 326.6 513 42.9
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 4.3e-87 326.2 516 44.2
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 4.3e-87 326.2 388 50.3
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 4.3e-87 326.2 388 50.3
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 5.7e-87 325.9 393 50.4
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 5.7e-87 325.9 388 50.0
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 5.7e-87 325.9 515 43.5
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 5.7e-87 325.9 508 42.7
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 7.4e-87 325.5 388 50.3
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 7.4e-87 325.5 514 44.7
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 7.4e-87 325.5 380 56.8
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 9.6e-87 325.1 395 49.4
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 1.6e-86 324.3 389 50.9
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 1.6e-86 324.3 389 50.9
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 1.6e-86 324.3 513 41.7
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 1.6e-86 324.3 503 43.3
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.6e-86 324.3 517 43.5
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.8e-86 323.6 512 44.3
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 4.8e-86 322.8 562 40.4
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 1.1e-85 321.6 503 43.9
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 1.1e-85 321.6 517 42.0
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 2.4e-85 320.5 392 50.5
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 4.0e-85 319.7 513 47.4
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 5.3e-85 319.3 503 42.7
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 6.9e-85 318.9 504 42.7
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 1.2e-84 318.2 373 50.1
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 2.6e-84 317.0 523 42.3
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 3.4e-84 316.6 382 50.5
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 4.5e-84 316.2 513 42.3
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 4.5e-84 316.2 505 41.8
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.0e-83 315.1 508 41.9
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.7e-83 314.3 380 49.5
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.7e-83 314.3 522 42.0
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 3.8e-83 313.2 403 48.4
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 3.8e-83 313.2 514 42.4
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 5.0e-83 312.8 510 41.4
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 6.5e-83 312.4 378 50.5
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 8.4e-83 312.0 510 42.2
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 2.5e-82 310.5 512 43.2
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 4.2e-82 309.7 298 55.7
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 7.1e-82 308.9 506 42.3
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 9.3e-82 308.5 508 41.3
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 1.2e-81 308.1 506 44.7
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 1.2e-81 308.1 513 47.4
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.6e-81 307.8 517 43.1
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 3.5e-81 306.6 379 48.3
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 7.9e-81 305.4 397 48.4
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 1.8e-80 304.3 503 42.5
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 3.0e-80 303.5 506 42.9
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 3.0e-80 303.5 425 47.3
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 6.7e-80 302.4 505 43.8
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.5e-79 301.2 510 41.0
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.5e-79 301.2 510 41.0
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 1.5e-79 301.2 395 49.1
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 2.5e-79 300.4 438 44.7
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 2.5e-79 300.4 378 47.6
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 8.2e-78 295.4 512 41.8
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.4e-77 294.7 504 41.1
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 5.3e-77 292.7 307 53.7
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 2.6e-76 290.4 498 40.4
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 2.1e-73 280.8 304 53.3
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 3.6e-73 280.0 563 37.5
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 3.6e-73 280.0 380 51.6
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 3.0e-72 276.9 367 45.5
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 5.1e-72 276.2 508 40.0
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 3.4e-68 263.5 274 54.7
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 1.8e-56 224.6 448 36.8
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.8e-53 214.5 440 37.7
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 9.1e-53 212.2 169 66.9
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 8.5e-51 205.7 246 50.4
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 9.4e-50 202.2 451 36.4
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.1e-45 188.7 127 74.8
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 1.4e-37 161.8 256 39.5
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 1.4e-37 161.8 256 39.5
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 3.8e-35 153.7 268 39.2
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 2.8e-33 147.5 402 32.3
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 6.8e-32 142.9 244 39.3
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.0e-28 131.3 503 31.0
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 5.9e-28 129.8 367 35.7
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 1.7e-27 128.3 74 83.8
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 2.3e-27 127.9 503 31.0
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 3.9e-27 127.1 386 32.1
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 1.2e-25 122.1 69 85.5
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.1e-24 117.5 198 38.4
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 6.8e-24 116.3 272 34.9
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 5.8e-23 113.2 67 77.6
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.2e-22 111.3 209 38.8
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 6.4e-22 109.8 302 36.4
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 1.1e-21 109.0 447 28.2
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 3.2e-21 107.5 73 72.6
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 1.7e-19 101.7 105 54.3
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.7e-19 101.7 91 54.9
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 8.6e-19 99.4 66 74.2
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 2.8e-17 94.4 130 40.8
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 2.8e-17 94.4 130 40.8
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 2.3e-16 91.3 87 58.6
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 5.6e-10 70.1 92 48.9
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 2.1e-09 68.2 63 57.1
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 2.9e-06 57.8 53 58.5
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 8.4e-06 56.2 65 44.6
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 8.4e-06 56.2 65 44.6


User provided reference genes

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