Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 0.0e+00 1777.3 1292 100.0
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 2.3e-121 441.4 977 35.7
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 2.5e-99 368.2 909 35.4
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 7.6e-96 356.7 1214 33.1
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 9.6e-91 339.7 996 32.4
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 2.6e-88 331.6 984 31.6
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 1.0e-87 329.7 982 31.3
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 2.2e-87 328.6 986 30.0
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 4.9e-87 327.4 986 31.4
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 2.7e-85 321.6 994 29.2
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 7.9e-85 320.1 987 31.4
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 3.0e-84 318.2 975 30.1
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 5.1e-84 317.4 975 30.1
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 1.1e-83 316.2 974 30.3
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 1.5e-83 315.8 990 31.1
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 5.7e-83 313.9 985 29.6
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 1.6e-82 312.4 987 30.7
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 2.8e-82 311.6 973 29.8
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 3.7e-82 311.2 986 30.2
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 3.7e-82 311.2 973 30.0
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 4.8e-82 310.8 985 31.1
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 4.8e-82 310.8 984 30.4
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 6.2e-82 310.5 977 30.0
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 8.2e-82 310.1 1241 31.6
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 1.8e-81 308.9 979 30.6
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 1.8e-81 308.9 978 30.5
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 1.8e-81 308.9 985 30.2
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 5.3e-81 307.4 1006 30.0
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 2.0e-80 305.4 973 29.8
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 3.4e-80 304.7 975 29.3
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.4e-80 304.7 997 30.9
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.4e-80 304.7 977 31.4
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 4.5e-80 304.3 980 29.5
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 4.5e-80 304.3 992 29.0
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 4.5e-80 304.3 979 29.2
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 5.8e-80 303.9 987 29.7
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.0e-79 303.1 978 31.5
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 2.2e-79 302.0 986 30.4
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 2.9e-79 301.6 987 30.1
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 2.9e-79 301.6 987 30.8
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 3.8e-79 301.2 962 30.8
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 6.5e-79 300.4 975 30.6
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 1.4e-78 299.3 932 29.6
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 1.4e-78 299.3 1001 28.9
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 2.5e-78 298.5 976 29.5
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 2.5e-78 298.5 978 30.3
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 2.5e-78 298.5 937 31.2
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 4.2e-78 297.7 912 31.2
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 9.3e-78 296.6 995 28.9
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 1.2e-77 296.2 1148 31.0
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.6e-77 295.8 959 30.8
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 2.1e-77 295.4 987 31.1
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 2.1e-77 295.4 973 28.8
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 7.9e-77 293.5 977 29.6
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 3.0e-76 291.6 911 30.2
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 3.9e-76 291.2 985 28.5
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 3.9e-76 291.2 973 29.5
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 5.1e-76 290.8 983 27.8
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 6.7e-76 290.4 985 30.3
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 1.5e-75 289.3 969 29.8
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 2.5e-75 288.5 986 29.9
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 3.3e-75 288.1 980 28.2
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 5.7e-75 287.3 986 30.0
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 7.4e-75 287.0 933 30.2
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.3e-74 286.2 1007 29.2
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 1.6e-74 285.8 930 30.2
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 4.8e-74 284.3 963 28.6
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 8.2e-74 283.5 935 29.8
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 1.8e-73 282.3 989 28.5
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 3.1e-73 281.6 980 29.4
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 4.1e-73 281.2 976 28.5
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 6.9e-73 280.4 960 28.0
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 1.5e-72 279.3 973 29.3
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 1.0e-71 276.6 976 28.8
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.3e-71 276.2 976 28.1
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 1.7e-71 275.8 985 28.7
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 1.7e-71 275.8 987 27.5
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 3.8e-71 274.6 1212 26.7
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 3.8e-71 274.6 936 28.8
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 1.1e-70 273.1 974 28.4
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 1.4e-70 272.7 980 29.0
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 1.4e-70 272.7 916 30.3
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.5e-70 271.9 936 30.6
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 2.5e-70 271.9 940 30.4
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 5.5e-70 270.8 996 28.1
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 2.1e-69 268.9 973 27.4
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 2.7e-69 268.5 935 28.9
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 3.6e-69 268.1 980 29.9
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 6.1e-69 267.3 989 28.0
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 6.1e-69 267.3 983 29.9
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 7.9e-69 266.9 994 28.6
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.4e-68 266.2 974 27.8
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 3.0e-68 265.0 938 30.3
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 3.0e-68 265.0 977 28.2
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 3.9e-68 264.6 936 28.5
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.0e-67 262.3 937 29.8
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 2.5e-67 261.9 936 29.0
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 5.7e-67 260.8 976 28.0
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 3.7e-66 258.1 986 27.4
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 8.2e-66 256.9 924 30.4
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 2.4e-65 255.4 942 29.5
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 2.4e-65 255.4 953 32.3
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 3.1e-65 255.0 977 27.2
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 5.0e-63 247.7 986 27.3
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 2.5e-62 245.4 988 27.6
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 2.5e-62 245.4 909 29.3
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 4.2e-62 244.6 982 26.8
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 5.5e-62 244.2 973 26.1
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 2.7e-61 241.9 932 29.1
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 1.8e-60 239.2 980 28.5
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 3.9e-60 238.0 439 39.2
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 5.7e-59 234.2 394 41.4
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 9.7e-59 233.4 989 25.6
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 2.2e-58 232.3 975 27.5
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 1.5e-56 226.1 437 36.6
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 1.0e-55 223.4 411 42.1
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 2.2e-55 222.2 475 36.8
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 2.9e-55 221.9 975 24.9
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 3.2e-54 218.4 441 37.6
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 1.8e-52 212.6 498 34.3
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 1.1e-51 209.9 982 25.8
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 9.1e-49 200.3 764 29.3
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 7.2e-46 190.7 985 24.5
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 2.0e-43 182.6 990 23.9
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 8.3e-42 177.2 815 28.7
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 5.9e-40 171.0 156 51.9
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 2.2e-39 169.1 964 24.6
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 1.6e-37 162.9 287 38.3
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 1.0e-36 160.2 996 23.8
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 1.4e-36 159.8 154 46.8
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 5.2e-36 157.9 1054 29.3
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.2e-35 156.8 268 38.1
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 7.5e-35 154.1 261 37.9
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.8e-33 149.4 210 41.0
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.2e-32 146.7 171 48.5
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 3.5e-32 145.2 211 41.7
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 6.6e-31 141.0 204 38.7
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 6.6e-31 141.0 228 36.8
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 3.6e-29 135.2 175 42.9
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 3.6e-29 135.2 175 42.9
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 5.2e-28 131.3 975 22.7
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 2.0e-27 129.4 180 41.1
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 1.3e-26 126.7 684 25.9
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 1.3e-23 116.7 979 22.4
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 4.3e-22 111.7 870 29.0
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 9.5e-22 110.5 152 42.8
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.6e-21 109.8 385 29.1
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.4e-20 106.7 129 51.9
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 6.8e-20 104.4 262 35.9
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 6.8e-20 104.4 130 50.8
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 8.9e-20 104.0 261 35.6
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 2.6e-19 102.4 257 35.8
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 3.4e-19 102.1 263 35.0
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 4.4e-19 101.7 268 35.1
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 4.4e-19 101.7 253 34.4
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 2.4e-17 95.9 213 37.1
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 5.6e-14 84.7 212 32.5
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 7.3e-14 84.3 119 47.1
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 1.6e-13 83.2 212 32.5
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 1.1e-12 80.5 212 32.1
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 1.4e-12 80.1 177 32.2
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.7e-10 73.2 78 52.6
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 4.1e-09 68.6 126 30.2
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.3e-07 63.5 131 43.5


User provided reference genes

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