Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g18689 Chara braunii HOM05D006238 ORTHO05D007458 1.5e-49 200.7 265 100.0
SMO364G0258 Selaginella moellendorffii HOM05D006238 ORTHO05D007458 6.0e-14 82.4 60 61.7
Cfa019307 Carpinus fangiana HOM05D006238 ORTHO05D007458 1.7e-13 80.9 260 69.6
Haze_07689 Corylus avellana HOM05D006238 ORTHO05D007458 1.7e-13 80.9 260 69.6
Medtr3g023830 Medicago truncatula HOM05D006238 ORTHO05D007458 3.9e-13 79.7 260 61.5
Psat5g211960 Pisum sativum HOM05D006238 ORTHO05D007458 5.1e-13 79.3 260 70.4
Solyc12g040320.2 Solanum lycopersicum HOM05D006238 ORTHO05D007458 5.1e-13 79.3 260 70.0
Sopen12g019730 Solanum pennellii HOM05D006238 ORTHO05D007458 8.7e-13 78.6 260 66.2
CSS0008812 Camellia sinensis var. sinensis HOM05D006238 ORTHO05D007458 1.1e-12 78.2 260 68.8
Oeu038367.1 Olea europaea HOM05D006238 ORTHO05D007458 1.9e-12 77.4 260 69.2
PGSC0003DMG400005395 Solanum tuberosum HOM05D006238 ORTHO05D007458 1.9e-12 77.4 59 55.9
arahy.Tifrunner.gnm1.ann1.G7J9WL Arachis hypogaea HOM05D006238 ORTHO05D007458 2.5e-12 77.0 59 55.9
arahy.Tifrunner.gnm1.ann1.XMW6VU Arachis hypogaea HOM05D006238 ORTHO05D007458 2.5e-12 77.0 59 55.9
CANSAT80G2720 Cannabis sativa HOM05D006238 ORTHO05D007458 2.5e-12 77.0 260 69.2
QL93p0191_0017 Quercus lobata HOM05D006238 ORTHO05D007458 2.5e-12 77.0 260 69.2
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 2.5e-12 77.0 59 52.5
Actinidia35026 Actinidia chinensis HOM05D006238 ORTHO05D007458 3.3e-12 76.6 260 69.6
Duzib205G0643 Durio zibethinus HOM05D006238 ORTHO05D007458 4.3e-12 76.3 260 68.1
Phvul.009G193701 Phaseolus vulgaris HOM05D006238 ORTHO05D007458 4.3e-12 76.3 59 52.5
BcaB01g05644 Brassica carinata HOM05D006238 ORTHO05D007458 5.6e-12 75.9 262 69.1
BcaB01g05687 Brassica carinata HOM05D006238 ORTHO05D007458 5.6e-12 75.9 60 55.0
BolC3t12934H Brassica oleracea HOM05D006238 ORTHO05D007458 5.6e-12 75.9 262 69.1
Ciclev10021749m.g Citrus clementina HOM05D006238 ORTHO05D007458 5.6e-12 75.9 261 69.7
QL10p018767 Quercus lobata HOM05D006238 ORTHO05D007458 5.6e-12 75.9 260 68.8
HPP92_013436 Vanilla planifolia HOM05D001674 ORTHO05D008374 5.6e-12 75.9 59 55.9
HPP92_027112 Vanilla planifolia HOM05D006238 ORTHO05D007458 5.6e-12 75.9 59 55.9
ATR0064G078 Amborella trichopoda HOM05D006238 ORTHO05D007458 7.3e-12 75.5 260 70.0
BcaB01g05688 Brassica carinata HOM05D006238 ORTHO05D007458 7.3e-12 75.5 60 55.0
A03p03520 Brassica napus HOM05D006238 ORTHO05D007458 9.6e-12 75.1 60 55.0
BraA03t09702Z Brassica rapa HOM05D006238 ORTHO05D007458 9.6e-12 75.1 60 55.0
MSTRG.22972 Avicennia marina HOM05D006238 ORTHO05D007458 1.3e-11 74.7 59 54.2
EL10Ac5g11104 Beta vulgaris HOM05D006238 ORTHO05D007458 1.3e-11 74.7 59 54.2
Glyma.04G164100 Glycine max HOM05D006238 ORTHO05D007458 1.3e-11 74.7 59 50.8
Lj1g0017158 Lotus japonicus HOM05D006238 ORTHO05D007458 1.3e-11 74.7 59 52.5
Lalb_Chr08g0238951 Lupinus albus HOM05D006238 ORTHO05D007458 1.3e-11 74.7 59 52.5
C03p03970 Brassica napus HOM05D006238 ORTHO05D007458 1.6e-11 74.3 60 53.3
Gohir.A09G243100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 1.6e-11 74.3 59 50.8
Gohir.D09G243800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 1.6e-11 74.3 59 50.8
Gorai.006G267600 Gossypium raimondii HOM05D006238 ORTHO05D007458 1.6e-11 74.3 59 50.8
Sed0022301 Sechium edule HOM05D006238 ORTHO05D007458 1.6e-11 74.3 260 69.6
AL6G18240 Arabidopsis lyrata HOM05D006238 ORTHO05D007458 2.1e-11 73.9 57 56.1
CiPaw.11G050500 Carya illinoinensis HOM05D006238 ORTHO05D007458 2.1e-11 73.9 260 68.5
Cc04_g15060 Coffea canephora HOM05D006238 ORTHO05D007458 2.1e-11 73.9 59 52.5
Prupe.5G201600 Prunus persica HOM05D006238 ORTHO05D007458 2.1e-11 73.9 260 69.6
Solyc03g115410.3 Solanum lycopersicum HOM05D006238 ORTHO05D007458 2.1e-11 73.9 59 52.5
PGSC0003DMG401024548 Solanum tuberosum HOM05D006238 ORTHO05D007458 2.1e-11 73.9 59 52.5
Thecc.03G097700 Theobroma cacao HOM05D006238 ORTHO05D007458 2.1e-11 73.9 59 50.8
Carub.0006s0680 Capsella rubella HOM05D006238 ORTHO05D007458 2.8e-11 73.6 57 56.1
FvH4_5g14250 Fragaria vesca HOM05D006238 ORTHO05D007458 2.8e-11 73.6 260 68.1
HanXRQChr14g0439161 Helianthus annuus HOM05D006238 ORTHO05D007458 2.8e-11 73.6 59 50.8
Sp6g35050 Schrenkiella parvula HOM05D006238 ORTHO05D007458 2.8e-11 73.6 60 53.3
Migut.L00004 Erythranthe guttata HOM05D006238 ORTHO05D007458 3.6e-11 73.2 59 52.5
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 3.6e-11 73.2 59 49.2
MD14G1209200 Malus domestica HOM05D006238 ORTHO05D007458 3.6e-11 73.2 61 47.5
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 3.6e-11 73.2 59 52.5
Hund02602 Selenicereus undatus HOM05D006238 ORTHO05D007458 3.6e-11 73.2 59 52.5
Aa31LG3G18600 Aethionema arabicum HOM05D006238 ORTHO05D007458 4.8e-11 72.8 60 51.7
BcaB05g21597 Brassica carinata HOM05D006238 ORTHO05D007458 4.8e-11 72.8 60 51.7
BcaNung04721 Brassica carinata HOM05D006238 ORTHO05D007458 4.8e-11 72.8 60 51.7
C02p03310 Brassica napus HOM05D006238 ORTHO05D007458 4.8e-11 72.8 60 51.7
BolC2t06295H Brassica oleracea HOM05D006238 ORTHO05D007458 4.8e-11 72.8 60 51.7
BraA02t04934Z Brassica rapa HOM05D006238 ORTHO05D007458 4.8e-11 72.8 60 51.7
Cpa.g.sc94.12 Carica papaya HOM05D006238 ORTHO05D007458 4.8e-11 72.8 59 49.2
ClCG06G015770 Citrullus lanatus HOM05D006238 ORTHO05D007458 4.8e-11 72.8 260 70.8
MELO3C017212.2 Cucumis melo HOM05D006238 ORTHO05D007458 4.8e-11 72.8 260 70.4
CsaV3_1G002770 Cucumis sativus L. HOM05D006238 ORTHO05D007458 4.8e-11 72.8 260 70.4
HanXRQChr02g0042551 Helianthus annuus HOM05D006238 ORTHO05D007458 4.8e-11 72.8 59 49.2
Lsat_1_v5_gn_4_110280 Lactuca sativa HOM05D006238 ORTHO05D007458 4.8e-11 72.8 59 50.8
Aqoxy3G00445 Aquilegia oxysepala HOM05D006238 ORTHO05D007458 6.2e-11 72.4 260 68.1
FAN13G1324 Fragaria x ananassa HOM05D000113 ORTHO05D002571 6.2e-11 72.4 59 49.2
Gohir.A12G181100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 6.2e-11 72.4 59 50.8
Gohir.D12G183800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 6.2e-11 72.4 59 50.8
Gorai.008G197100 Gossypium raimondii HOM05D006238 ORTHO05D007458 6.2e-11 72.4 59 50.8
RcHm_v2.0_Chr7g0182671 Rosa chinensis HOM05D006238 ORTHO05D007458 6.2e-11 72.4 59 49.2
SalBow5G1318 Salvia bowleyana HOM05D006238 ORTHO05D007458 6.2e-11 72.4 59 50.8
Sopen03g034410 Solanum pennellii HOM05D006238 ORTHO05D007458 6.2e-11 72.4 59 52.5
SGA_v2.0_scaffold28G11764 Striga asiatica HOM05D006238 ORTHO05D007458 6.2e-11 72.4 59 50.8
CAN.G479.27 Capsicum annuum HOM05D006238 ORTHO05D007458 8.1e-11 72.0 59 50.8
ECA232G0231 Erigeron canadensis HOM05D000954 ORTHO05D000822 8.1e-11 72.0 59 49.2
ECA247G0665 Erigeron canadensis HOM05D000006 ORTHO05D007458 8.1e-11 72.0 59 49.2
Thhalv10014418m.g Eutrema salsugineum HOM05D006238 ORTHO05D007458 8.1e-11 72.0 60 51.7
MD06G1200000 Malus domestica HOM05D006238 ORTHO05D007458 8.1e-11 72.0 59 47.5
Nitab4.5_0004284g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 8.1e-11 72.0 59 49.2
Pp3c19_5770 Physcomitrium patens HOM05D006238 ORTHO05D007458 8.1e-11 72.0 64 53.1
PGR044G1626 Punica granatum HOM05D006238 ORTHO05D007458 8.1e-11 72.0 59 49.2
CARHR205290 Cardamine hirsuta HOM05D006238 ORTHO05D007458 1.1e-10 71.6 57 54.4
Lsat_1_v5_gn_1_13640 Lactuca sativa HOM05D006238 ORTHO05D007458 1.1e-10 71.6 59 49.2
Potri.015G048800 Populus trichocarpa HOM05D006238 ORTHO05D007458 1.1e-10 71.6 59 49.2
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 1.1e-10 71.6 59 49.2
Atru.chr9.382 Acer truncatum HOM05D006238 ORTHO05D007458 1.4e-10 71.2 59 49.2
DCAR_016594 Daucus carota HOM05D006238 ORTHO05D007458 1.4e-10 71.2 59 49.2
Migut.I00441 Erythranthe guttata HOM05D006238 ORTHO05D007458 1.4e-10 71.2 59 50.8
Glyma.06G201600 Glycine max HOM05D006238 ORTHO05D007458 1.4e-10 71.2 59 49.2
Ca_13804_v3 Cicer arietinum L. HOM05D006238 ORTHO05D007458 1.8e-10 70.9 59 47.5
Nitab4.5_0001961g0050 Nicotiana tabacum HOM05D006238 ORTHO05D007458 1.8e-10 70.9 59 50.8
Nitab4.5_0005160g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 1.8e-10 70.9 59 50.8
PSO478G4259 Papaver somniferum HOM05D006238 ORTHO05D007458 1.8e-10 70.9 59 50.8
AT5G07910 Arabidopsis thaliana HOM05D006238 ORTHO05D007458 2.4e-10 70.5 57 52.6
Peaxi162Scf00106g00109 Petunia axillaris HOM05D006238 ORTHO05D007458 2.4e-10 70.5 59 50.8
THA.LOC104801299 Tarenaya hassleriana HOM05D006238 ORTHO05D007458 2.4e-10 70.5 60 50.0
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 3.1e-10 70.1 59 49.2
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 4.0e-10 69.7 59 49.2
Dinv38791 Davidia involucrata HOM05D006238 ORTHO05D007458 4.0e-10 69.7 59 47.5
PSO017G1619 Papaver somniferum HOM05D006238 ORTHO05D007458 4.0e-10 69.7 59 49.2
GSVIVG01007912001 Vitis vinifera HOM05D006238 ORTHO05D007458 4.0e-10 69.7 261 67.4
Cre12.g503600 Chlamydomonas reinhardtii HOM05D006238 ORTHO05D007458 5.3e-10 69.3 60 48.3
Eucgr.K02503 Eucalyptus grandis HOM05D006238 ORTHO05D007458 5.3e-10 69.3 59 49.2
TWI81G0503 Tripterygium wilfordii HOM05D006238 ORTHO05D007458 5.3e-10 69.3 59 47.5
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 6.9e-10 68.9 59 47.5
PSO339G0502 Papaver somniferum HOM05D006238 ORTHO05D007458 6.9e-10 68.9 59 44.1
PSO384G2798 Papaver somniferum HOM05D006238 ORTHO05D007458 6.9e-10 68.9 59 44.1
BcaNung04724 Brassica carinata HOM05D006238 ORTHO05D007458 9.0e-10 68.6 60 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2402 Anthoceros agrestis HOM05D006238 ORTHO05D007458 1.5e-09 67.8 61 49.2
PRCOL_00001761 Prasinoderma coloniale HOM05D006238 ORTHO05D007458 1.5e-09 67.8 60 48.3
SEGI_40979 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 1.5e-09 67.8 56 53.6
Manes.06G087000 Manihot esculenta HOM05D006238 ORTHO05D007458 3.4e-09 66.6 59 47.5
CBR_g52452 Chara braunii HOM05D006395 ORTHO05D007458 4.4e-09 66.2 59 45.8
MCO07G688 Micromonas commoda HOM05D006238 ORTHO05D007458 5.8e-09 65.9 59 45.8
Zm00001eb008470 Zea mays HOM05D006238 ORTHO05D007458 5.8e-09 65.9 51 56.9
Nitab4.5_0001410g0100 Nicotiana tabacum HOM05D006238 ORTHO05D007458 9.9e-09 65.1 66 43.9
Hund26925 Selenicereus undatus HOM05D006238 ORTHO05D007458 3.8e-08 63.2 63 46.0
AUR62008501 Chenopodium quinoa HOM05D006238 ORTHO05D007458 6.4e-08 62.4 59 49.2
Os03g0212200 Oryza sativa ssp. japonica HOM05D006238 ORTHO05D007458 1.4e-07 61.2 59 49.2
AUR62021591 Chenopodium quinoa HOM05D006238 ORTHO05D007458 2.4e-07 60.5 58 48.3
Rhsim12G0152200 Rhododendron simsii HOM05D006238 ORTHO05D007458 5.4e-07 59.3 56 46.4
THA.LOC104800755 Tarenaya hassleriana HOM05D006395 ORTHO05D007894 9.3e-07 58.5 59 44.1
Cpa.g.sc94.13 Carica papaya HOM05D006238 ORTHO05D007458 1.2e-06 58.2 59 40.7
COL.COLO4_22216 Corchorus olitorius HOM05D006238 ORTHO05D007458 1.2e-06 58.2 59 42.4
A04p22790 Brassica napus HOM05D006395 ORTHO05D007894 2.1e-06 57.4 57 45.6
BraA04t17818Z Brassica rapa HOM05D006395 ORTHO05D007894 2.1e-06 57.4 57 45.6
Sp4g12670 Schrenkiella parvula HOM05D006395 ORTHO05D007894 2.7e-06 57.0 57 45.6
Sc10g0009770 Simmondsia chinensis HOM05D006238 ORTHO05D007458 2.7e-06 57.0 56 48.2
BcaB06g28340 Brassica carinata HOM05D006395 ORTHO05D007894 3.5e-06 56.6 57 45.6
BcaC02g08052 Brassica carinata HOM05D006395 ORTHO05D007894 3.5e-06 56.6 57 45.6
BcaC02g08055 Brassica carinata HOM05D006395 ORTHO05D007894 3.5e-06 56.6 57 45.6
C04p58990 Brassica napus HOM05D006395 ORTHO05D007894 3.5e-06 56.6 57 45.6
COL.COLO4_11118 Corchorus olitorius HOM05D006395 ORTHO05D007894 3.5e-06 56.6 59 44.1
AT2G30105 Arabidopsis thaliana HOM05D006395 ORTHO05D007894 4.6e-06 56.2 57 43.9
Ciclev10028704m.g Citrus clementina HOM05D006395 ORTHO05D007894 6.0e-06 55.8 57 42.1
Manes.18G144200 Manihot esculenta HOM05D006395 ORTHO05D007894 6.0e-06 55.8 57 43.9
CARHR123410 Cardamine hirsuta HOM05D006395 ORTHO05D007894 7.9e-06 55.5 57 43.9
Duzib168G0704 Durio zibethinus HOM05D006395 ORTHO05D007894 7.9e-06 55.5 57 43.9
Thhalv10016813m.g Eutrema salsugineum HOM05D006395 ORTHO05D007894 7.9e-06 55.5 57 43.9


User provided reference genes

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