Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 0.0e+00 1186.4 613 100.0
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 2.2e-85 320.9 287 61.3
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 3.2e-84 317.0 260 65.4
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 5.4e-84 316.2 260 65.0
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 5.4e-84 316.2 258 66.3
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 7.1e-84 315.8 252 66.3
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 2.7e-83 313.9 250 67.6
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 2.7e-83 313.9 260 65.0
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 2.7e-83 313.9 260 64.6
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 2.7e-83 313.9 261 64.8
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 3.5e-83 313.5 260 64.6
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 4.6e-83 313.2 260 64.6
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 4.6e-83 313.2 287 60.6
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 6.0e-83 312.8 259 64.1
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 6.0e-83 312.8 279 61.6
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 7.8e-83 312.4 260 64.2
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 7.8e-83 312.4 289 60.2
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 7.8e-83 312.4 260 64.6
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 7.8e-83 312.4 254 66.1
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 7.8e-83 312.4 260 63.8
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 1.3e-82 311.6 319 55.8
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 1.3e-82 311.6 260 65.4
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 1.7e-82 311.2 287 59.9
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 2.3e-82 310.8 260 63.8
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 3.0e-82 310.5 278 61.5
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 3.0e-82 310.5 259 63.7
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 3.9e-82 310.1 257 63.8
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 3.9e-82 310.1 256 64.5
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 5.1e-82 309.7 272 61.0
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 5.1e-82 309.7 278 60.8
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 6.6e-82 309.3 260 63.8
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 6.6e-82 309.3 313 56.2
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 6.6e-82 309.3 256 63.7
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 8.6e-82 308.9 283 59.7
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 8.6e-82 308.9 269 62.1
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 1.1e-81 308.5 260 63.8
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 1.9e-81 307.8 261 64.4
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 1.9e-81 307.8 343 53.1
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 1.9e-81 307.8 260 63.5
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 2.5e-81 307.4 262 63.7
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 2.5e-81 307.4 262 64.1
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 2.5e-81 307.4 256 64.1
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 2.5e-81 307.4 256 64.1
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 2.5e-81 307.4 345 52.8
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 3.3e-81 307.0 256 64.1
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 4.3e-81 306.6 261 64.0
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 4.3e-81 306.6 278 59.7
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 4.3e-81 306.6 256 62.9
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 4.3e-81 306.6 261 64.0
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 5.6e-81 306.2 250 65.2
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 1.2e-80 305.1 261 63.2
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 1.2e-80 305.1 254 64.2
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 1.6e-80 304.7 326 55.5
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 2.1e-80 304.3 261 63.6
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 2.1e-80 304.3 260 63.1
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 2.1e-80 304.3 262 62.2
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 2.1e-80 304.3 256 62.5
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 4.7e-80 303.1 260 62.7
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 6.2e-80 302.8 270 61.1
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 8.1e-80 302.4 281 58.7
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 1.1e-79 302.0 276 60.1
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 1.1e-79 302.0 253 64.4
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 1.1e-79 302.0 260 62.3
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 1.1e-79 302.0 260 62.3
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 1.4e-79 301.6 303 57.1
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 1.4e-79 301.6 262 62.6
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 1.4e-79 301.6 262 62.6
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 1.4e-79 301.6 262 62.6
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 1.4e-79 301.6 262 62.6
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 1.4e-79 301.6 257 62.6
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 1.4e-79 301.6 262 62.2
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 1.8e-79 301.2 295 58.3
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 1.8e-79 301.2 261 63.2
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 1.8e-79 301.2 256 62.9
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 2.3e-79 300.8 262 62.6
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 2.3e-79 300.8 262 62.6
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 2.3e-79 300.8 311 55.6
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 3.1e-79 300.4 249 64.3
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 5.2e-79 299.7 261 62.5
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 5.2e-79 299.7 256 62.1
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 8.9e-79 298.9 261 62.1
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 5.8e-78 296.2 261 61.7
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 7.6e-78 295.8 287 57.1
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 1.7e-77 294.7 303 56.1
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 3.8e-77 293.5 366 48.4
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 1.4e-76 291.6 312 54.2
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 3.2e-76 290.4 278 58.6
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 5.4e-76 289.7 275 58.2
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 3.5e-75 287.0 245 62.9
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 6.0e-75 286.2 236 66.1
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 3.0e-74 283.9 274 58.4
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 6.6e-74 282.7 235 64.7
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 1.1e-68 265.4 246 58.5
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 2.4e-68 264.2 299 54.2
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 1.2e-67 261.9 263 56.7
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 3.9e-66 256.9 227 62.6
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 3.9e-66 256.9 276 55.1
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 8.7e-66 255.8 220 63.2
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 1.9e-65 254.6 227 61.2
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 2.1e-64 251.1 213 63.4
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 8.1e-64 249.2 217 63.6
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 1.8e-63 248.1 249 57.0
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 9.0e-63 245.7 264 54.9
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 4.5e-62 243.4 287 52.3
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 1.3e-61 241.9 287 51.9
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 2.9e-61 240.7 247 55.9
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 3.2e-60 237.3 197 63.5
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 1.3e-58 231.9 222 58.6
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 1.2e-54 218.8 257 49.8
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 7.6e-54 216.1 290 47.6
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 2.9e-53 214.2 189 63.0
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 2.7e-51 207.6 292 45.9
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 7.6e-46 189.5 238 50.4
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 6.5e-45 186.4 233 47.2
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 7.2e-36 156.4 129 65.9
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 4.6e-35 153.7 190 49.5
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 2.5e-33 147.9 291 39.9
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 1.6e-27 128.6 209 44.5
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 2.7e-27 127.9 226 42.0
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 3.6e-27 127.5 134 56.0
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 3.0e-26 124.4 99 67.7
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 3.1e-23 114.4 115 59.1
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 4.5e-22 110.5 92 63.0
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 3.0e-18 97.8 118 50.0
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 3.3e-17 94.4 163 40.5
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 9.7e-17 92.8 163 39.9
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 5.7e-09 67.0 52 65.4
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 5.7e-09 67.0 84 46.4
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 2.8e-08 64.7 60 55.0
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 7.0e-07 60.1 57 61.4
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 7.7e-06 56.6 37 75.7


User provided reference genes

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