Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g11992 Chara braunii HOM05D002125 ORTHO05D008387 3.3e-276 954.9 673 100.0
SEGI_38686 Sequoiadendron giganteum HOM05D002813 ORTHO05D003203 2.3e-11 75.1 148 33.8
GSVIVG01024623001 Vitis vinifera HOM05D002125 ORTHO05D002105 5.1e-11 73.9 335 23.0
QL01p025894 Quercus lobata HOM05D002125 ORTHO05D002105 8.7e-11 73.2 551 20.3
FvH4_6g10500 Fragaria vesca HOM05D002125 ORTHO05D002105 3.3e-10 71.2 161 32.9
FAN14G4647 Fragaria x ananassa HOM05D002125 ORTHO05D002105 3.3e-10 71.2 161 32.9
PSO349G0138 Papaver somniferum HOM05D002125 ORTHO05D002105 3.3e-10 71.2 591 25.7
Actinidia14674 Actinidia chinensis HOM05D002813 ORTHO05D003203 5.7e-10 70.5 143 35.7
CAN.G955.3 Capsicum annuum HOM05D002125 ORTHO05D002105 5.7e-10 70.5 565 24.8
FAN05G3214 Fragaria x ananassa HOM05D002125 ORTHO05D002105 2.2e-09 68.6 160 30.6
Hund07112 Selenicereus undatus HOM05D002125 ORTHO05D002105 3.7e-09 67.8 326 25.5
Gorai.002G133700 Gossypium raimondii HOM05D001905 ORTHO05D001820 4.8e-09 67.4 184 33.2
Gohir.A01G121800 Gossypium hirsutum HOM05D001905 ORTHO05D001820 6.3e-09 67.0 184 32.6
Peaxi162Scf00264g00860 Petunia axillaris HOM05D002125 ORTHO05D002105 6.3e-09 67.0 606 30.0
Gohir.D01G109200 Gossypium hirsutum HOM05D001905 ORTHO05D001820 1.1e-08 66.2 184 33.2
Actinidia38080 Actinidia chinensis HOM05D001905 ORTHO05D001820 1.4e-08 65.9 181 34.3
PGSC0003DMG400011864 Solanum tuberosum HOM05D002125 ORTHO05D002105 1.4e-08 65.9 590 24.7
CiPaw.13G068100 Carya illinoinensis HOM05D002125 ORTHO05D002105 1.8e-08 65.5 549 20.6
Sp1g34260 Schrenkiella parvula HOM05D001905 ORTHO05D001820 1.8e-08 65.5 180 32.2
Manes.05G177200 Manihot esculenta HOM05D001905 ORTHO05D001820 2.4e-08 65.1 181 33.7
Pp3c14_26460 Physcomitrium patens HOM05D001905 ORTHO05D001820 3.1e-08 64.7 161 30.4
Pp3c14_26462 Physcomitrium patens HOM05D001905 ORTHO05D001820 3.1e-08 64.7 161 30.4
Nitab4.5_0000029g0060 Nicotiana tabacum HOM05D001905 ORTHO05D001820 4.1e-08 64.3 181 33.1
Zm00001eb185570 Zea mays HOM05D006667 ORTHO05D008387 4.1e-08 64.3 71 46.5
CSS0047715 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 6.9e-08 63.5 311 22.5
FvH4_3g00150 Fragaria vesca HOM05D002813 ORTHO05D003203 6.9e-08 63.5 133 29.3
Medtr1g018790 Medicago truncatula HOM05D001905 ORTHO05D001820 6.9e-08 63.5 182 32.4
vmacro20333 Vaccinium macrocarpon HOM05D002125 ORTHO05D002105 6.9e-08 63.5 92 39.1
BcaB02g09069 Brassica carinata HOM05D000530 ORTHO05D003341 9.1e-08 63.2 74 44.6
FvH4_2g37241 Fragaria vesca HOM05D002813 ORTHO05D003203 9.1e-08 63.2 138 28.3
Gohir.A11G269800 Gossypium hirsutum HOM05D002125 ORTHO05D002105 9.1e-08 63.2 76 40.8
MSTRG.24343 Avicennia marina HOM05D001905 ORTHO05D001820 1.2e-07 62.8 510 21.8
Lalb_Chr14g0368481 Lupinus albus HOM05D001905 ORTHO05D001820 1.2e-07 62.8 185 29.7
MBI06_g27487_MAGBIO Magnolia biondii HOM05D006667 ORTHO05D008387 1.2e-07 62.8 70 45.7
Sed0015116 Sechium edule HOM05D001905 ORTHO05D001820 1.2e-07 62.8 185 29.7
Sopen10g027910 Solanum pennellii HOM05D002125 ORTHO05D002105 1.2e-07 62.8 89 38.2
Dinv39270 Davidia involucrata HOM05D001905 ORTHO05D001820 1.5e-07 62.4 181 32.0
Gohir.A05G205700 Gossypium hirsutum HOM05D001905 ORTHO05D001820 1.5e-07 62.4 180 32.2
MD12G1181200 Malus domestica HOM05D002125 ORTHO05D002105 1.5e-07 62.4 547 23.2
MD15G1077300 Malus domestica HOM05D001905 ORTHO05D001820 1.5e-07 62.4 184 31.0
Gohir.D11G280000 Gossypium hirsutum HOM05D002125 ORTHO05D002105 2.0e-07 62.0 76 39.5
Gorai.007G302200 Gossypium raimondii HOM05D002125 ORTHO05D002105 2.0e-07 62.0 76 39.5
Psat6g015040 Pisum sativum HOM05D001905 ORTHO05D001820 2.0e-07 62.0 182 31.9
RcHm_v2.0_Chr3g0461461 Rosa chinensis HOM05D002125 ORTHO05D002105 2.0e-07 62.0 151 31.1
ATR0705G192 Amborella trichopoda HOM05D002813 ORTHO05D003203 2.6e-07 61.6 144 28.5
AL5G30200 Arabidopsis lyrata HOM05D001905 ORTHO05D001820 2.6e-07 61.6 179 30.7
Duzib106G1805 Durio zibethinus HOM05D002125 ORTHO05D002105 2.6e-07 61.6 76 42.1
Gohir.D05G209000 Gossypium hirsutum HOM05D001905 ORTHO05D001820 2.6e-07 61.6 181 31.5
Solyc10g076290.2 Solanum lycopersicum HOM05D002125 ORTHO05D002105 2.6e-07 61.6 77 42.9
AUR62013441 Chenopodium quinoa HOM05D001219 ORTHO05D001017 3.4e-07 61.2 139 31.7
CsaV3_4G034690 Cucumis sativus L. HOM05D001905 ORTHO05D001820 3.4e-07 61.2 183 30.1
Duzib116G0512 Durio zibethinus HOM05D001905 ORTHO05D001820 3.4e-07 61.2 181 33.1
FAN13G3008 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.4e-07 61.2 145 30.3
Gohir.D12G135900 Gossypium hirsutum HOM05D006667 ORTHO05D008387 3.4e-07 61.2 74 41.9
Gorai.008G147100 Gossypium raimondii HOM05D006667 ORTHO05D008387 3.4e-07 61.2 74 41.9
CARHR159150 Cardamine hirsuta HOM05D001905 ORTHO05D001820 4.5e-07 60.8 180 29.4
MD08G1093600 Malus domestica HOM05D001905 ORTHO05D001820 4.5e-07 60.8 184 31.0
Sed0022119 Sechium edule HOM05D006667 ORTHO05D008387 4.5e-07 60.8 70 44.3
SMO228G0132 Selaginella moellendorffii HOM05D002762 ORTHO05D004643 4.5e-07 60.8 154 29.2
CSS0024135 Camellia sinensis var. sinensis HOM05D001905 ORTHO05D001820 5.9e-07 60.5 182 31.9
CARHR280380 Cardamine hirsuta HOM05D001905 ORTHO05D001820 5.9e-07 60.5 184 30.4
MELO3C011757.2 Cucumis melo HOM05D006667 ORTHO05D008387 5.9e-07 60.5 70 44.3
CsaV3_5G029020 Cucumis sativus L. HOM05D006667 ORTHO05D008387 5.9e-07 60.5 70 44.3
Dinv12184 Davidia involucrata HOM05D002125 ORTHO05D002105 5.9e-07 60.5 81 39.5
Gorai.009G215400 Gossypium raimondii HOM05D001905 ORTHO05D001820 5.9e-07 60.5 180 32.2
Hma1.2p1_0394F.1_g143320 Hydrangea macrophylla HOM05D001905 ORTHO05D001820 5.9e-07 60.5 159 29.6
Sed0011343 Sechium edule HOM05D006667 ORTHO05D008387 5.9e-07 60.5 70 45.7
SEGI_01489 Sequoiadendron giganteum HOM05D006667 ORTHO05D008387 5.9e-07 60.5 70 42.9
Sc05g0001600 Simmondsia chinensis HOM05D005998 ORTHO05D007664 5.9e-07 60.5 139 32.4
Actinidia20774 Actinidia chinensis HOM05D002125 ORTHO05D002105 7.7e-07 60.1 91 37.4
AL1G53280 Arabidopsis lyrata HOM05D001905 ORTHO05D001820 7.7e-07 60.1 183 31.1
CSS0021162 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 7.7e-07 60.1 79 36.7
CSS0022259 Camellia sinensis var. sinensis HOM05D002813 ORTHO05D003203 7.7e-07 60.1 143 31.5
CANSAT35G0731 Cannabis sativa HOM05D002125 ORTHO05D002105 7.7e-07 60.1 138 31.2
Carub.0005s1643 Capsella rubella HOM05D001905 ORTHO05D001820 7.7e-07 60.1 179 30.7
Cpa.g.sc48.114 Carica papaya HOM05D002125 ORTHO05D002105 7.7e-07 60.1 80 37.5
ClCG02G014160 Citrullus lanatus HOM05D006667 ORTHO05D008387 7.7e-07 60.1 70 44.3
Hma1.2p1_0501F.1_g167260 Hydrangea macrophylla HOM05D002125 ORTHO05D002105 7.7e-07 60.1 89 36.0
Hma1.2p1_2488F.1_g323150 Hydrangea macrophylla HOM05D002125 ORTHO05D002105 7.7e-07 60.1 89 36.0
THA.LOC104821244 Tarenaya hassleriana HOM05D001905 ORTHO05D001820 7.7e-07 60.1 179 29.6
Ah.03g147880 Amaranthus hybridus HOM05D006667 ORTHO05D008387 1.0e-06 59.7 93 39.8
Ciclev10033734m.g Citrus clementina HOM05D006667 ORTHO05D008387 1.0e-06 59.7 70 41.4
Gorai.009G049800 Gossypium raimondii HOM05D002813 ORTHO05D003203 1.0e-06 59.7 132 34.8
Lsat_1_v5_gn_5_47620 Lactuca sativa HOM05D002762 ORTHO05D004643 1.0e-06 59.7 141 29.8
SalBow2G2931 Salvia bowleyana HOM05D006667 ORTHO05D008387 1.0e-06 59.7 76 44.7
CDE04G2906 Ceratophyllum demersum HOM05D006667 ORTHO05D008387 1.3e-06 59.3 70 45.7
MELO3C016784.2 Cucumis melo HOM05D001905 ORTHO05D001820 1.3e-06 59.3 183 30.1
Duzib177G0079 Durio zibethinus HOM05D002125 ORTHO05D002105 1.3e-06 59.3 76 39.5
ECA240G4644 Erigeron canadensis HOM05D002762 ORTHO05D004643 1.3e-06 59.3 141 29.8
HanXRQChr14g0460411 Helianthus annuus HOM05D001905 ORTHO05D001820 1.3e-06 59.3 184 29.9
Lalb_Chr02g0143651 Lupinus albus HOM05D006667 ORTHO05D008387 1.3e-06 59.3 82 36.6
QL12p041353 Quercus lobata HOM05D002813 ORTHO05D003203 1.3e-06 59.3 144 29.9
SEGI_09038 Sequoiadendron giganteum HOM05D018674 ORTHO05D020861 1.3e-06 59.3 159 25.8
Actinidia29062 Actinidia chinensis HOM05D002125 ORTHO05D002105 1.7e-06 58.9 157 28.7
AT5G67250 Arabidopsis thaliana HOM05D001905 ORTHO05D001820 1.7e-06 58.9 184 31.5
CANSAT78G2402 Cannabis sativa HOM05D006667 ORTHO05D008387 1.7e-06 58.9 70 45.7
COL.COLO4_10556 Corchorus olitorius HOM05D002125 ORTHO05D002105 1.7e-06 58.9 76 40.8
Gohir.D05G048500 Gossypium hirsutum HOM05D002813 ORTHO05D003203 1.7e-06 58.9 132 34.8
Hma1.2p1_0360F.1_g135910 Hydrangea macrophylla HOM05D001905 ORTHO05D001820 1.7e-06 58.9 185 29.7
Nn2g11037 Nelumbo nucifera HOM05D002125 ORTHO05D002105 1.7e-06 58.9 83 37.3
A09p09460 Brassica napus HOM05D001905 ORTHO05D001820 2.2e-06 58.5 180 28.9
Carub.0001s3591 Capsella rubella HOM05D001905 ORTHO05D001820 2.2e-06 58.5 183 30.6
Ciclev10000831m.g Citrus clementina HOM05D001905 ORTHO05D001820 2.2e-06 58.5 182 31.9
Gohir.A05G046700 Gossypium hirsutum HOM05D002813 ORTHO05D003203 2.2e-06 58.5 132 34.8
Nitab4.5_0000197g0010 Nicotiana tabacum HOM05D001905 ORTHO05D001820 2.2e-06 58.5 180 31.7
PSO017G2695 Papaver somniferum HOM05D002125 ORTHO05D002105 2.2e-06 58.5 89 38.2
SalBow7G4561 Salvia bowleyana HOM05D001905 ORTHO05D001820 2.2e-06 58.5 156 31.4
Solyc01g099970.4 Solanum lycopersicum HOM05D002125 ORTHO05D002105 2.2e-06 58.5 84 36.9
Solyc04g008980.3 Solanum lycopersicum HOM05D006667 ORTHO05D008387 2.2e-06 58.5 70 47.1
Sopen01g043490 Solanum pennellii HOM05D002125 ORTHO05D002105 2.2e-06 58.5 84 36.9
Thecc.05G316100 Theobroma cacao HOM05D002125 ORTHO05D002105 2.2e-06 58.5 75 38.7
arahy.Tifrunner.gnm1.ann1.H7FQDY Arachis hypogaea HOM05D002125 ORTHO05D002105 2.9e-06 58.2 82 43.9
BraA09t36595Z Brassica rapa HOM05D001905 ORTHO05D001820 2.9e-06 58.2 180 28.9
Ca_13256_v3 Cicer arietinum L. HOM05D001905 ORTHO05D001820 2.9e-06 58.2 182 30.8
COL.COLO4_33111 Corchorus olitorius HOM05D006667 ORTHO05D008387 2.9e-06 58.2 76 39.5
Lalb_Chr20g0118281 Lupinus albus HOM05D002762 ORTHO05D004643 2.9e-06 58.2 148 28.4
Potri.006G238300 Populus trichocarpa HOM05D002813 ORTHO05D003203 2.9e-06 58.2 65 43.1
Prupe.1G448200 Prunus persica HOM05D002813 ORTHO05D003203 2.9e-06 58.2 144 28.5
QL12p041358 Quercus lobata HOM05D002813 ORTHO05D003203 2.9e-06 58.2 65 43.1
Sc20g0006750 Simmondsia chinensis HOM05D002125 ORTHO05D002105 2.9e-06 58.2 77 39.0
arahy.Tifrunner.gnm1.ann1.L75CTN Arachis hypogaea HOM05D002762 ORTHO05D004643 3.8e-06 57.8 161 28.0
EL10Ac7g15876 Beta vulgaris HOM05D002125 ORTHO05D002105 3.8e-06 57.8 551 27.8
BcaC04g23205 Brassica carinata HOM05D001905 ORTHO05D001820 3.8e-06 57.8 180 28.9
A03p22370 Brassica napus HOM05D000530 ORTHO05D003341 3.8e-06 57.8 82 39.0
C09p11140 Brassica napus HOM05D001905 ORTHO05D001820 3.8e-06 57.8 180 28.9
BolC9t54003H Brassica oleracea HOM05D001905 ORTHO05D001820 3.8e-06 57.8 180 28.9
Carub.0008s2726 Capsella rubella HOM05D001905 ORTHO05D001820 3.8e-06 57.8 184 29.9
CAN.G1273.38 Capsicum annuum HOM05D002125 ORTHO05D002105 3.8e-06 57.8 80 37.5
CARHR190200 Cardamine hirsuta HOM05D006667 ORTHO05D008387 3.8e-06 57.8 70 44.3
CDE05G3454 Ceratophyllum demersum HOM05D002125 ORTHO05D002105 3.8e-06 57.8 75 38.7
Lsat_1_v5_gn_3_90401 Lactuca sativa HOM05D001905 ORTHO05D001820 3.8e-06 57.8 182 28.6
Nitab4.5_0003850g0070 Nicotiana tabacum HOM05D002125 ORTHO05D002105 3.8e-06 57.8 107 32.7
Psat3g012440 Pisum sativum HOM05D002125 ORTHO05D002105 3.8e-06 57.8 77 41.6
SalBow4G2763 Salvia bowleyana HOM05D002125 ORTHO05D002105 3.8e-06 57.8 93 37.6
Thecc.08G001200 Theobroma cacao HOM05D001905 ORTHO05D001820 3.8e-06 57.8 181 33.1
Aa31LG5G19680 Aethionema arabicum HOM05D000530 ORTHO05D003341 5.0e-06 57.4 69 44.9
ATR0618G066 Amborella trichopoda HOM05D006667 ORTHO05D008387 5.0e-06 57.4 96 34.4
ATR0693G098 Amborella trichopoda HOM05D002125 ORTHO05D002105 5.0e-06 57.4 358 27.4
AT5G23340 Arabidopsis thaliana HOM05D006667 ORTHO05D008387 5.0e-06 57.4 96 35.4
MSTRG.19965 Avicennia marina HOM05D002887 ORTHO05D003159 5.0e-06 57.4 139 28.1
BcaB02g09947 Brassica carinata HOM05D001905 ORTHO05D001820 5.0e-06 57.4 186 29.0
CSS0006973 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 5.0e-06 57.4 87 37.9
Thhalv10011393m.g Eutrema salsugineum HOM05D001905 ORTHO05D001820 5.0e-06 57.4 183 30.1
FAN02G2848 Fragaria x ananassa HOM05D002125 ORTHO05D002105 5.0e-06 57.4 83 37.3
FAN05G3110 Fragaria x ananassa HOM05D002125 ORTHO05D002105 5.0e-06 57.4 83 36.1
FAN09G3322 Fragaria x ananassa HOM05D002125 ORTHO05D002105 5.0e-06 57.4 83 36.1
TAR369G0073 Trochodendron aralioides HOM05D002125 ORTHO05D002105 5.0e-06 57.4 81 39.5
TAR376G0028 Trochodendron aralioides HOM05D001905 ORTHO05D001820 5.0e-06 57.4 184 31.0
Atru.chr11.1242 Acer truncatum HOM05D006667 ORTHO05D008387 6.5e-06 57.0 70 37.1
Actinidia11543 Actinidia chinensis HOM05D002125 ORTHO05D002105 6.5e-06 57.0 69 39.1
MSTRG.20404 Avicennia marina HOM05D002125 ORTHO05D002105 6.5e-06 57.0 83 34.9
BcaB04g20069 Brassica carinata HOM05D001905 ORTHO05D001820 6.5e-06 57.0 180 28.9
Cc00_g13900 Coffea canephora HOM05D002125 ORTHO05D002105 6.5e-06 57.0 89 36.0
Eucgr.B01905 Eucalyptus grandis HOM05D002125 ORTHO05D002105 6.5e-06 57.0 76 36.8
Eucgr.K02937 Eucalyptus grandis HOM05D002125 ORTHO05D002105 6.5e-06 57.0 563 25.6
FAN20G1781 Fragaria x ananassa HOM05D002813 ORTHO05D003203 6.5e-06 57.0 69 36.2
MD04G1167900 Malus domestica HOM05D002125 ORTHO05D002105 6.5e-06 57.0 88 36.4
Sp5g12030 Schrenkiella parvula HOM05D001905 ORTHO05D001820 6.5e-06 57.0 178 28.1
TPR.G18042 Trifolium pratense HOM05D002762 ORTHO05D004643 6.5e-06 57.0 152 28.3
Aa31LG11G2790 Aethionema arabicum HOM05D006667 ORTHO05D008387 8.5e-06 56.6 70 44.3
AL8G44090 Arabidopsis lyrata HOM05D001905 ORTHO05D001820 8.5e-06 56.6 183 30.1
arahy.Tifrunner.gnm1.ann1.PS6LJB Arachis hypogaea HOM05D002125 ORTHO05D002105 8.5e-06 56.6 71 45.1
A05p21540 Brassica napus HOM05D001905 ORTHO05D001820 8.5e-06 56.6 183 27.9
C03p26510 Brassica napus HOM05D000530 ORTHO05D003341 8.5e-06 56.6 82 37.8
BolC3t15037H Brassica oleracea HOM05D000530 ORTHO05D003341 8.5e-06 56.6 82 37.8
BraA05t21074Z Brassica rapa HOM05D001905 ORTHO05D001820 8.5e-06 56.6 183 27.9
CANSAT78G1359 Cannabis sativa HOM05D002762 ORTHO05D004643 8.5e-06 56.6 161 28.6
Nitab4.5_0003497g0070 Nicotiana tabacum HOM05D002125 ORTHO05D002105 8.5e-06 56.6 77 37.7


User provided reference genes

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