Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 4.0e-72 274.6 137 100.0
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 3.3e-34 148.7 176 55.7
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 9.7e-34 147.1 176 55.1
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 1.7e-33 146.4 176 54.5
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 2.2e-33 146.0 176 55.1
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 3.7e-33 145.2 176 54.5
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 1.1e-32 143.7 176 54.5
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 2.4e-32 142.5 176 53.4
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 3.1e-32 142.1 176 54.0
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 5.3e-32 141.4 193 50.8
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 1.2e-31 140.2 174 53.4
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.5e-31 139.8 176 51.1
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 2.0e-31 139.4 176 52.8
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 1.0e-30 137.1 176 52.3
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 1.0e-30 137.1 176 52.3
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 4.7e-28 128.3 174 48.3
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 1.6e-23 113.2 131 55.7
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 5.5e-21 104.8 174 42.0
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 1.6e-20 103.2 176 42.6
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 2.3e-19 99.4 172 41.3
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 3.0e-19 99.0 176 39.2
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 3.0e-19 99.0 176 39.2
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 4.0e-19 98.6 180 39.4
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 4.0e-19 98.6 176 40.9
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 5.2e-19 98.2 168 40.5
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 1.2e-18 97.1 176 40.3
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 1.5e-18 96.7 176 40.9
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 4.4e-18 95.1 176 38.6
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 4.4e-18 95.1 173 40.5
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 5.7e-18 94.7 176 39.8
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 7.5e-18 94.4 173 39.9
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 9.7e-18 94.0 175 39.4
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 1.3e-17 93.6 185 37.8
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 1.3e-17 93.6 176 37.5
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 1.3e-17 93.6 174 39.7
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 2.2e-17 92.8 91 63.7
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 2.8e-17 92.4 172 40.1
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 2.8e-17 92.4 172 36.6
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 2.8e-17 92.4 174 39.1
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 1.1e-16 90.5 174 37.9
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 1.8e-16 89.7 182 41.8
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 1.8e-16 89.7 183 41.5
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 1.8e-16 89.7 174 40.8
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.8e-16 89.7 172 39.0
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 2.4e-16 89.4 182 39.6
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 4.1e-16 88.6 220 34.1
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 4.1e-16 88.6 174 38.5
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 5.3e-16 88.2 175 37.7
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 7.0e-16 87.8 173 37.0
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 7.0e-16 87.8 172 37.8
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 9.1e-16 87.4 172 39.5
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 1.2e-15 87.0 180 37.8
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.2e-15 87.0 195 35.4
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 1.2e-15 87.0 179 38.0
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 1.6e-15 86.7 176 38.1
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.6e-15 86.7 185 36.8
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 2.0e-15 86.3 181 39.8
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 2.0e-15 86.3 173 37.6
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 2.7e-15 85.9 182 40.7
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 2.7e-15 85.9 181 40.9
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 3.5e-15 85.5 185 36.2
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 3.5e-15 85.5 182 35.7
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 3.5e-15 85.5 182 40.7
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 4.5e-15 85.1 180 37.8
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 4.5e-15 85.1 173 37.0
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 5.9e-15 84.7 187 35.8
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 5.9e-15 84.7 174 37.4
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.0e-14 84.0 176 36.4
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.0e-14 84.0 153 39.2
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 1.7e-14 83.2 174 37.4
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 1.7e-14 83.2 174 37.4
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 1.7e-14 83.2 174 37.4
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 1.7e-14 83.2 174 40.2
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 2.2e-14 82.8 174 36.8
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 2.2e-14 82.8 172 36.0
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 2.2e-14 82.8 156 37.8
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 2.9e-14 82.4 172 37.8
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 2.9e-14 82.4 174 36.8
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 3.8e-14 82.0 172 36.0
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 3.8e-14 82.0 173 35.8
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 5.0e-14 81.6 161 36.6
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 6.5e-14 81.3 134 45.5
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 6.5e-14 81.3 130 40.0
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 6.5e-14 81.3 175 35.4
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 8.5e-14 80.9 156 39.7
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 2.5e-13 79.3 174 36.2
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 3.2e-13 79.0 129 44.2
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 3.2e-13 79.0 182 34.6
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.7e-12 75.9 162 38.3
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 3.6e-12 75.5 131 40.5
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 1.4e-11 73.6 171 36.8
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.8e-11 73.2 198 31.8
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.8e-11 73.2 175 36.6
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 1.8e-11 73.2 161 36.0
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 3.0e-11 72.4 130 40.0
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 5.2e-11 71.6 137 40.9
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 1.2e-10 70.5 166 36.1
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 3.4e-10 68.9 173 33.5
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 3.4e-10 68.9 175 33.7
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 4.4e-10 68.6 152 36.8
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 7.5e-10 67.8 48 75.0
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 9.8e-10 67.4 120 40.0
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 1.7e-09 66.6 163 33.7
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 4.8e-09 65.1 90 45.6
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 6.3e-09 64.7 155 36.1
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.1e-08 63.9 109 41.3
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 1.1e-08 63.9 66 54.5
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 4.1e-08 62.0 84 46.4
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 9.1e-08 60.8 99 43.4
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 2.0e-07 59.7 164 29.9
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 2.7e-07 59.3 116 39.7
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 3.5e-07 58.9 165 34.5
CARHR286240 Cardamine hirsuta HOM05D004725 ORTHO05D005683 4.5e-07 58.5 76 47.4
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 4.5e-07 58.5 163 31.9
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 5.9e-07 58.2 153 32.7
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 7.7e-07 57.8 50 62.0
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 1.0e-06 57.4 163 31.3
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 2.9e-06 55.8 48 64.6


User provided reference genes

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