Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR286570 Cardamine hirsuta HOM05D002743 ORTHO05D002895 9.4e-228 793.1 384 100.0
CARHR286560 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.1e-126 456.4 412 58.7
AL5G18350 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.8e-107 392.9 417 52.5
AL5G18360 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.3e-85 320.1 414 46.6
CARHR286590 Cardamine hirsuta HOM05D002743 ORTHO05D002895 3.9e-40 169.9 142 65.5
THA.LOC104823978 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 1.4e-37 161.4 449 30.5
AL6G47130 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.6e-33 146.7 394 31.7
AT3G23970 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 6.1e-33 146.0 434 28.6
AL3G39540 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.0e-32 145.2 424 29.5
Thhalv10029227m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.8e-32 144.4 388 30.7
AT3G23950 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 3.0e-32 143.7 435 28.3
Carub.0003s2455 Capsella rubella HOM05D002743 ORTHO05D002895 6.7e-32 142.5 446 28.9
THA.LOC104824016 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 6.7e-32 142.5 445 28.1
Carub.0004s2674 Capsella rubella HOM05D002743 ORTHO05D002895 1.4e-29 134.8 400 30.8
AL3G39550 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.8e-29 134.4 377 28.4
BolC7t41698H Brassica oleracea HOM05D002743 ORTHO05D002895 1.8e-29 134.4 449 28.1
BcaB08g36410 Brassica carinata HOM05D002743 ORTHO05D002895 4.1e-29 133.3 409 29.6
BraA01t02518Z Brassica rapa HOM05D002743 ORTHO05D002895 5.3e-29 132.9 431 29.5
CARHR100280 Cardamine hirsuta HOM05D002743 ORTHO05D002895 6.9e-29 132.5 386 27.7
A01p25990 Brassica napus HOM05D002743 ORTHO05D002895 1.2e-28 131.7 429 29.8
BcaB08g36564 Brassica carinata HOM05D002743 ORTHO05D002895 3.4e-28 130.2 432 27.5
BcaC06g35666 Brassica carinata HOM05D002743 ORTHO05D002895 4.5e-28 129.8 449 27.2
BcaB08g37317 Brassica carinata HOM05D002743 ORTHO05D002895 5.9e-28 129.4 430 29.8
AL6G43570 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 7.7e-28 129.0 393 27.7
AL3G39570 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.0e-27 128.6 429 27.0
AL6G43580 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.0e-27 128.6 389 28.0
A10p19880 Brassica napus HOM05D002743 ORTHO05D002895 1.3e-27 128.3 430 29.8
C07p12300 Brassica napus HOM05D002743 ORTHO05D002895 1.7e-27 127.9 449 26.9
THA.LOC104805970 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 1.7e-27 127.9 453 27.6
AL6G43490 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 5.0e-27 126.3 374 31.0
BcaC04g19490 Brassica carinata HOM05D002743 ORTHO05D002895 6.5e-27 125.9 429 30.8
C09p55180 Brassica napus HOM05D002743 ORTHO05D002895 6.5e-27 125.9 429 30.8
BraA10t43989Z Brassica rapa HOM05D002743 ORTHO05D002895 8.5e-27 125.6 441 30.4
Sp3g21990 Schrenkiella parvula HOM05D002743 ORTHO05D002895 8.5e-27 125.6 443 26.6
CARHR033610 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.5e-26 124.0 390 27.9
Sp5g25320 Schrenkiella parvula HOM05D002743 ORTHO05D002895 4.2e-26 123.2 389 29.6
Carub.0006s3136 Capsella rubella HOM05D002743 ORTHO05D002895 1.2e-25 121.7 380 28.7
A07p08150 Brassica napus HOM05D002743 ORTHO05D002895 2.1e-25 120.9 446 27.6
Carub.0007s1819 Capsella rubella HOM05D002743 ORTHO05D002895 3.6e-25 120.2 400 27.8
A10p19100 Brassica napus HOM05D002743 ORTHO05D002895 4.6e-25 119.8 365 30.7
Carub.0004s1288 Capsella rubella HOM05D002743 ORTHO05D002895 4.6e-25 119.8 392 27.6
Thhalv10009727m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 4.6e-25 119.8 381 30.4
BraA07t28599Z Brassica rapa HOM05D002743 ORTHO05D002895 1.0e-24 118.6 380 28.9
Carub.0007s1889 Capsella rubella HOM05D002743 ORTHO05D002895 1.4e-24 118.2 423 27.0
A04p11100 Brassica napus HOM05D002743 ORTHO05D002895 1.8e-24 117.9 424 26.7
AT3G26010 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 3.9e-24 116.7 425 28.5
BraA04t16772Z Brassica rapa HOM05D002743 ORTHO05D002895 3.9e-24 116.7 424 26.2
C04p44830 Brassica napus HOM05D002743 ORTHO05D002895 5.1e-24 116.3 426 26.5
BolC1t01435H Brassica oleracea HOM05D002743 ORTHO05D002895 8.8e-24 115.5 440 28.6
AL1G57560 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.5e-23 114.8 384 30.5
BolC2t06988H Brassica oleracea HOM05D002743 ORTHO05D002895 1.5e-23 114.8 366 30.1
Carub.0003s2456 Capsella rubella HOM05D002743 ORTHO05D002895 5.7e-23 112.8 331 29.6
BcaB07g33448 Brassica carinata HOM05D002743 ORTHO05D002895 9.7e-23 112.1 435 25.7
CARHR131260 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.3e-22 111.7 374 27.8
BcaC04g19386 Brassica carinata HOM05D002743 ORTHO05D002895 1.7e-22 111.3 356 28.7
AL5G16370 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.2e-22 110.9 443 27.3
A02p05860 Brassica napus HOM05D002743 ORTHO05D002895 2.8e-22 110.5 366 30.1
BraA02t05538Z Brassica rapa HOM05D002743 ORTHO05D002895 2.8e-22 110.5 366 30.1
Thhalv10013759m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 4.8e-22 109.8 400 28.0
Aa31sc58G40 Aethionema arabicum HOM05D002743 ORTHO05D002895 6.3e-22 109.4 446 25.6
BcaB06g26601 Brassica carinata HOM05D002743 ORTHO05D002895 8.2e-22 109.0 411 27.0
Carub.0006s3248 Capsella rubella HOM05D002743 ORTHO05D002895 8.2e-22 109.0 389 27.2
AL5G14680 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.1e-21 108.6 369 29.8
BraA01t01181Z Brassica rapa HOM05D002743 ORTHO05D002895 1.4e-21 108.2 425 26.8
AT1G49990 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.8e-21 107.8 438 27.6
A01p12360 Brassica napus HOM05D002743 ORTHO05D002895 1.8e-21 107.8 440 27.0
CARHR025250 Cardamine hirsuta HOM05D002743 ORTHO05D002895 4.1e-21 106.7 368 29.6
Carub.0005s0386 Capsella rubella HOM05D002743 ORTHO05D002895 5.3e-21 106.3 353 31.4
Sp2g04630 Schrenkiella parvula HOM05D002743 ORTHO05D002895 5.3e-21 106.3 447 28.0
AL1G27780 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 6.9e-21 105.9 420 27.9
BraA07t28566Z Brassica rapa HOM05D002743 ORTHO05D002895 6.9e-21 105.9 432 26.6
AT3G28223 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 9.1e-21 105.5 428 27.3
C07p11650 Brassica napus HOM05D002743 ORTHO05D002895 1.2e-20 105.1 343 28.6
Carub.0005s0676 Capsella rubella HOM05D002743 ORTHO05D002895 1.2e-20 105.1 418 26.8
Sp1g36850 Schrenkiella parvula HOM05D002743 ORTHO05D002895 1.2e-20 105.1 443 26.9
SpUn0137_0030 Schrenkiella parvula HOM05D002743 ORTHO05D002895 1.2e-20 105.1 443 26.9
AL4G45790 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.5e-20 104.8 238 34.5
BcaC08g43177 Brassica carinata HOM05D002743 ORTHO05D002895 2.0e-20 104.4 431 27.8
A09p04310 Brassica napus HOM05D002743 ORTHO05D002895 2.0e-20 104.4 385 28.1
BraA09t36068Z Brassica rapa HOM05D002743 ORTHO05D002895 2.0e-20 104.4 385 28.1
Carub.0006s2838 Capsella rubella HOM05D002743 ORTHO05D002895 2.0e-20 104.4 312 29.8
CARHR229890 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.0e-20 104.4 416 27.2
Thhalv10011517m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.0e-20 104.4 407 30.2
C06p04770 Brassica napus HOM05D002743 ORTHO05D002895 2.6e-20 104.0 431 27.8
Thhalv10000704m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.6e-20 104.0 425 28.7
BcaC02g09624 Brassica carinata HOM05D002743 ORTHO05D002895 3.4e-20 103.6 339 28.6
BcaC04g23794 Brassica carinata HOM05D002743 ORTHO05D002895 3.4e-20 103.6 419 28.4
BolC4t26061H Brassica oleracea HOM05D002743 ORTHO05D002895 3.4e-20 103.6 339 28.6
AT3G28330 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 7.7e-20 102.4 427 27.9
A07p07740 Brassica napus HOM05D002743 ORTHO05D002895 7.7e-20 102.4 435 26.2
Thhalv10024137m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 7.7e-20 102.4 392 28.1
BcaB07g33449 Brassica carinata HOM05D002743 ORTHO05D002895 1.0e-19 102.1 441 26.1
A06p03440 Brassica napus HOM05D002743 ORTHO05D002895 1.0e-19 102.1 433 27.5
Aa31sc58G10 Aethionema arabicum HOM05D002743 ORTHO05D002895 1.3e-19 101.7 390 26.7
BcaNung04711 Brassica carinata HOM05D002743 ORTHO05D002895 1.3e-19 101.7 413 28.6
BcaB07g33451 Brassica carinata HOM05D002743 ORTHO05D002895 2.2e-19 100.9 439 27.8
BcaC08g43169 Brassica carinata HOM05D002743 ORTHO05D002895 2.2e-19 100.9 447 23.9
C09p04610 Brassica napus HOM05D002743 ORTHO05D002895 2.9e-19 100.5 419 27.9
BolC9t53389H Brassica oleracea HOM05D002743 ORTHO05D002895 2.9e-19 100.5 419 27.9
BraA06t23552Z Brassica rapa HOM05D002743 ORTHO05D002895 3.8e-19 100.1 433 27.7
Carub.0008s0568 Capsella rubella HOM05D002743 ORTHO05D002895 3.8e-19 100.1 416 28.8
BcaC04g22203 Brassica carinata HOM05D002743 ORTHO05D002895 5.0e-19 99.8 454 25.6
AT1G15680 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 6.5e-19 99.4 418 27.3
BolC9t55130H Brassica oleracea HOM05D002743 ORTHO05D002895 6.5e-19 99.4 451 25.5
BcaC06g35723 Brassica carinata HOM05D002743 ORTHO05D002895 8.5e-19 99.0 422 27.3
AL1G67480 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.1e-18 98.6 382 29.1
AL8G22320 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.1e-18 98.6 414 26.1
BolC6t35599H Brassica oleracea HOM05D002743 ORTHO05D002895 1.9e-18 97.8 447 25.3
Carub.0005s0683 Capsella rubella HOM05D002743 ORTHO05D002895 1.9e-18 97.8 389 28.3
SpUn0003_0080 Schrenkiella parvula HOM05D002743 ORTHO05D002895 2.5e-18 97.4 266 30.8
C06p04690 Brassica napus HOM05D002743 ORTHO05D002895 3.2e-18 97.1 447 23.9
AL34U10080 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.2e-18 96.7 416 26.2
BraA09t37413Z Brassica rapa HOM05D002743 ORTHO05D002895 4.2e-18 96.7 454 26.0
BolC2t11536H Brassica oleracea HOM05D002743 ORTHO05D002895 5.5e-18 96.3 427 26.7
AL8G22310 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 7.2e-18 95.9 393 27.5
Carub.0005s0675 Capsella rubella HOM05D002743 ORTHO05D002895 7.2e-18 95.9 413 25.7
C02p54750 Brassica napus HOM05D002743 ORTHO05D002895 9.4e-18 95.5 418 26.3
BraA05t20946Z Brassica rapa HOM05D002743 ORTHO05D002895 1.2e-17 95.1 457 26.5
BcaB08g36563 Brassica carinata HOM05D002743 ORTHO05D002895 2.1e-17 94.4 414 25.1
A09p17800 Brassica napus HOM05D002743 ORTHO05D002895 2.1e-17 94.4 400 26.8
C09p22150 Brassica napus HOM05D002743 ORTHO05D002895 2.1e-17 94.4 454 25.3
BolC7t41637H Brassica oleracea HOM05D002743 ORTHO05D002895 2.1e-17 94.4 299 29.1
BraA02t08585Z Brassica rapa HOM05D002743 ORTHO05D002895 2.1e-17 94.4 417 26.6
Thhalv10027176m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.1e-17 94.4 365 28.2
BcaC03g17512 Brassica carinata HOM05D002743 ORTHO05D002895 2.7e-17 94.0 440 26.4
A02p35850 Brassica napus HOM05D002743 ORTHO05D002895 2.7e-17 94.0 417 26.6
BraA02t08589Z Brassica rapa HOM05D002743 ORTHO05D002895 2.7e-17 94.0 417 26.6
AL6G48200 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.6e-17 93.6 387 26.9
AL5G17810 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 7.9e-17 92.4 375 24.5
A03p54310 Brassica napus HOM05D002743 ORTHO05D002895 1.8e-16 91.3 304 28.0
Aa31LG9G5850 Aethionema arabicum HOM05D002743 ORTHO05D002895 2.3e-16 90.9 366 26.0
BcaB07g31193 Brassica carinata HOM05D002743 ORTHO05D002895 2.3e-16 90.9 394 26.4
C09p56260 Brassica napus HOM05D002743 ORTHO05D002895 3.9e-16 90.1 356 26.1
AL3G39690 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 5.2e-16 89.7 231 29.9
CARHR286580 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.5e-15 88.2 118 44.9
AT4G22430 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 2.0e-15 87.8 432 24.8
BcaB07g33444 Brassica carinata HOM05D002743 ORTHO05D002895 3.3e-15 87.0 446 24.0
CARHR100270 Cardamine hirsuta HOM05D002743 ORTHO05D002895 5.7e-15 86.3 375 25.3
BolC9t53387H Brassica oleracea HOM05D002743 ORTHO05D002895 1.7e-14 84.7 308 27.6
CARHR040090 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.2e-14 84.3 451 25.9
BcaNung04712 Brassica carinata HOM05D002743 ORTHO05D002895 3.7e-14 83.6 179 36.3
C09p04580 Brassica napus HOM05D002743 ORTHO05D002895 4.8e-14 83.2 239 31.8
BNapus_Darmor_BZH_scaffold_38p02040 Brassica napus HOM05D002743 ORTHO05D002895 6.3e-14 82.8 273 27.8
AL6G48160 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 8.2e-14 82.4 409 27.9
Carub.0005s1587 Capsella rubella HOM05D002743 ORTHO05D002895 1.4e-13 81.6 350 27.7
CARHR288610 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.4e-13 81.6 239 29.7
AT3G48220 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 7.0e-13 79.3 176 34.1
C01p14880 Brassica napus HOM05D002743 ORTHO05D002895 7.0e-13 79.3 399 26.8
BraA03t14493Z Brassica rapa HOM05D002743 ORTHO05D002895 9.1e-13 79.0 209 27.8
AT3G28280 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.2e-12 78.6 310 26.1
Thhalv10019528m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.0e-12 77.8 176 32.4
Rhsim08G0238800 Rhododendron simsii HOM05D001729 ORTHO05D001155 2.6e-12 77.4 327 24.8
Sopen10g002860 Solanum pennellii HOM05D008898 ORTHO05D001155 5.9e-12 76.3 358 25.1
BcaC04g23796 Brassica carinata HOM05D002743 ORTHO05D002895 1.3e-11 75.1 216 29.2
CARHR286050 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.2e-11 74.3 245 28.6
BcaNung01438 Brassica carinata HOM05D002743 ORTHO05D002895 3.8e-11 73.6 252 29.0
PGSC0003DMG400025009 Solanum tuberosum HOM05D008898 ORTHO05D001155 3.8e-11 73.6 357 23.2
Carub.0151s0001 Capsella rubella HOM05D002743 ORTHO05D002895 5.0e-11 73.2 389 24.7
HanXRQChr17g0547181 Helianthus annuus HOM05D008898 ORTHO05D001155 6.5e-11 72.8 352 24.7
Sabra15G0014700 Salix brachista HOM05D001729 ORTHO05D001155 6.5e-11 72.8 387 24.0
BcaC09g51280 Brassica carinata HOM05D002743 ORTHO05D002895 8.5e-11 72.4 194 30.9
CAN.G1110.53 Capsicum annuum HOM05D001729 ORTHO05D001155 8.5e-11 72.4 360 25.8
AUR62006002 Chenopodium quinoa HOM05D001729 ORTHO05D001155 8.5e-11 72.4 385 24.2
AL133U10030 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.1e-10 72.0 157 32.5
Carub.0005s0673 Capsella rubella HOM05D002743 ORTHO05D002895 1.1e-10 72.0 414 22.7
Gohir.D09G096101 Gossypium hirsutum HOM05D001729 ORTHO05D001155 2.5e-10 70.9 416 23.1
Gorai.006G112800 Gossypium raimondii HOM05D001729 ORTHO05D001155 5.5e-10 69.7 417 23.5
BNapus_Darmor_BZH_scaffold_38p02050 Brassica napus HOM05D002743 ORTHO05D002895 7.2e-10 69.3 187 31.6
Lsat_1_v5_gn_0_16480 Lactuca sativa HOM05D008898 ORTHO05D001155 7.2e-10 69.3 359 25.1
Rhsim08G0237800 Rhododendron simsii HOM05D001729 ORTHO05D001155 7.2e-10 69.3 335 25.7
Rhsim08G0219900 Rhododendron simsii HOM05D001729 ORTHO05D001155 9.4e-10 68.9 331 24.5
Gohir.A09G096401 Gossypium hirsutum HOM05D001729 ORTHO05D001155 1.2e-09 68.6 420 23.3
BcaC04g23797 Brassica carinata HOM05D002743 ORTHO05D002895 3.6e-09 67.0 210 27.6
BolC7t45770H Brassica oleracea HOM05D002743 ORTHO05D002895 3.6e-09 67.0 184 28.3
AL5G17850 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 6.1e-09 66.2 198 31.3
Rhsim08G0220200 Rhododendron simsii HOM05D001729 ORTHO05D001155 6.1e-09 66.2 214 27.6
Oeu045297.1 Olea europaea HOM05D008040 ORTHO05D010075 1.0e-08 65.5 265 24.9
AL7G33200 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.0e-08 63.5 197 28.9
CARHR288580 Cardamine hirsuta HOM05D002743 ORTHO05D002895 4.0e-08 63.5 175 28.0
TAR625G1137 Trochodendron aralioides HOM05D001729 ORTHO05D001155 6.7e-08 62.8 389 23.9
AUR62035624 Chenopodium quinoa HOM05D001729 ORTHO05D001155 8.8e-08 62.4 389 22.1
Thhalv10009395m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 8.8e-08 62.4 218 30.3
HanXRQChr15g0474391 Helianthus annuus HOM05D008898 ORTHO05D001155 8.8e-08 62.4 218 27.5
RcHm_v2.0_Chr6g0292091 Rosa chinensis HOM05D001729 ORTHO05D001155 1.5e-07 61.6 226 26.5
Glyma.18G044800 Glycine max HOM05D010448 ORTHO05D012537 4.4e-07 60.1 211 26.5
A05p20390 Brassica napus HOM05D002743 ORTHO05D002895 3.7e-06 57.0 183 29.0
Ciclev10028647m.g Citrus clementina HOM05D000007 ORTHO05D000039 4.8e-06 56.6 218 26.1
HanXRQChr15g0474331 Helianthus annuus HOM05D008898 ORTHO05D001155 4.8e-06 56.6 353 21.5


User provided reference genes

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