Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR286240 Cardamine hirsuta HOM05D004725 ORTHO05D005683 4.5e-49 197.6 98 100.0
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 4.8e-27 124.4 64 90.6
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 2.4e-26 122.1 64 89.1
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 5.3e-26 120.9 64 87.5
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 7.0e-26 120.6 64 85.9
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 7.0e-26 120.6 64 87.5
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 7.0e-26 120.6 64 87.5
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 2.0e-25 119.0 64 87.5
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 2.0e-25 119.0 64 87.5
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 1.7e-24 115.9 64 85.9
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 1.9e-23 112.5 64 81.2
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 9.4e-23 110.2 63 79.4
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 1.5e-20 102.8 64 71.9
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 2.6e-20 102.1 64 71.9
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 2.6e-20 102.1 64 71.9
CARHR182560 Cardamine hirsuta HOM05D004725 ORTHO05D005683 7.4e-20 100.5 52 92.3
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 2.2e-19 99.0 64 68.8
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 3.5e-09 65.1 63 49.2
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 4.5e-09 64.7 70 44.3
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 4.5e-09 64.7 70 44.3
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 4.5e-09 64.7 70 44.3
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 7.7e-09 63.9 63 42.9
CARHR120280 Cardamine hirsuta HOM05D000030 ORTHO05D000031 1.3e-08 63.2 38 78.9
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 1.3e-08 63.2 63 41.3
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.7e-08 62.8 64 48.4
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 2.2e-08 62.4 64 45.3
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 2.9e-08 62.0 64 46.9
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 3.8e-08 61.6 64 46.9
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 3.8e-08 61.6 62 48.4
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 3.8e-08 61.6 61 42.6
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 5.0e-08 61.2 63 38.1
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 6.5e-08 60.8 63 42.9
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 6.5e-08 60.8 64 46.9
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 8.5e-08 60.5 62 41.9
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 8.5e-08 60.5 64 48.4
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 8.5e-08 60.5 66 43.9
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 8.5e-08 60.5 64 45.3
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 8.5e-08 60.5 66 43.9
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.1e-07 60.1 76 47.4
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 1.5e-07 59.7 62 35.5
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 1.9e-07 59.3 66 42.4
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 1.9e-07 59.3 66 42.4
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 1.9e-07 59.3 64 46.9
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.5e-07 58.9 63 38.1
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 2.5e-07 58.9 63 41.3
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 2.5e-07 58.9 63 46.0
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 3.2e-07 58.5 63 42.9
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 5.5e-07 57.8 93 35.5
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 5.5e-07 57.8 67 40.3
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 5.5e-07 57.8 78 39.7
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 5.5e-07 57.8 63 41.3
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 5.5e-07 57.8 66 42.4
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 5.5e-07 57.8 64 48.4
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 7.2e-07 57.4 64 43.8
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 9.4e-07 57.0 64 45.3
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 9.4e-07 57.0 64 42.2
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 9.4e-07 57.0 63 41.3
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 9.4e-07 57.0 63 39.7
CARHR289810 Cardamine hirsuta HOM05D000030 ORTHO05D000031 1.2e-06 56.6 38 68.4
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 1.2e-06 56.6 77 35.1
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 1.2e-06 56.6 66 39.4
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 1.6e-06 56.2 62 40.3
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 1.6e-06 56.2 69 42.0
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 1.6e-06 56.2 69 42.0
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 1.6e-06 56.2 64 43.8
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 1.6e-06 56.2 69 40.6
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 2.1e-06 55.8 63 39.7
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 2.1e-06 55.8 60 41.7
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 2.1e-06 55.8 79 29.1
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 2.1e-06 55.8 64 45.3
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 2.1e-06 55.8 64 45.3
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 2.1e-06 55.8 64 45.3
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 2.1e-06 55.8 63 39.7
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 2.1e-06 55.8 64 40.6
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 4.7e-06 54.7 64 42.2
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 6.1e-06 54.3 63 34.9
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 6.1e-06 54.3 84 36.9


User provided reference genes

Program Settings