Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 1.8e-289 998.4 479 100.0
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 3.1e-276 954.5 479 94.6
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 4.9e-274 947.2 479 94.4
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 7.0e-273 943.3 479 94.6
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 1.6e-272 942.2 479 93.7
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 7.3e-270 933.3 472 94.5
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 7.3e-270 933.3 479 92.9
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 7.3e-270 933.3 479 92.9
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 1.4e-268 929.1 479 92.7
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 2.3e-268 928.3 479 92.5
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 3.7e-266 921.0 487 91.0
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 2.4e-265 918.3 479 91.6
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 9.2e-257 889.8 479 87.5
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 8.7e-255 883.2 487 86.2
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 5.3e-244 847.4 474 84.6
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 9.9e-243 843.2 480 83.8
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 3.8e-242 841.3 479 82.3
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 1.1e-241 839.7 479 82.3
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.9e-241 839.0 480 83.3
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 1.9e-241 839.0 474 83.8
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 2.4e-241 838.6 480 82.7
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 5.4e-241 837.4 480 82.9
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 2.7e-240 835.1 474 83.3
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 3.5e-240 834.7 479 81.8
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 7.9e-240 833.6 480 82.5
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 1.0e-239 833.2 474 83.1
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 1.3e-239 832.8 478 81.6
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 1.3e-239 832.8 481 82.7
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 1.8e-239 832.4 485 82.5
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 2.3e-239 832.0 479 81.8
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 3.0e-239 831.6 479 82.3
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 3.9e-239 831.2 476 82.8
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 8.7e-239 830.1 480 81.7
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 1.1e-238 829.7 479 81.8
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 2.5e-238 828.6 479 82.0
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 3.3e-238 828.2 479 81.2
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 3.3e-238 828.2 479 82.0
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 7.4e-238 827.0 481 82.3
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 7.4e-238 827.0 481 82.3
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 7.4e-238 827.0 481 82.1
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 9.6e-238 826.6 480 81.9
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.3e-237 826.2 474 82.3
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 1.6e-237 825.9 479 81.8
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 2.8e-237 825.1 479 81.8
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 6.2e-237 823.9 479 80.8
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 8.1e-237 823.5 479 82.0
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.4e-236 822.8 474 82.1
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.8e-236 822.4 474 82.1
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 2.4e-236 822.0 479 81.2
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 2.4e-236 822.0 479 80.2
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 2.4e-236 822.0 480 81.9
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 5.3e-236 820.8 480 80.4
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 6.9e-236 820.5 483 80.5
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 1.2e-235 819.7 479 80.4
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 2.6e-235 818.5 480 81.2
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 4.5e-235 817.8 479 81.4
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 5.8e-235 817.4 480 80.4
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 2.9e-234 815.1 455 83.7
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 3.8e-234 814.7 479 80.4
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 4.9e-234 814.3 487 79.7
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 1.4e-233 812.8 480 80.8
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 4.2e-233 811.2 479 81.0
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 4.2e-233 811.2 484 80.2
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 1.6e-232 809.3 480 79.8
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 1.6e-232 809.3 480 79.6
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 1.6e-232 809.3 471 81.1
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 2.1e-232 808.9 498 78.3
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 2.1e-232 808.9 479 80.0
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 2.7e-232 808.5 480 80.0
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 4.6e-232 807.7 473 81.0
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 7.9e-232 807.0 480 80.4
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.3e-231 806.2 480 80.2
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 1.8e-231 805.8 484 79.5
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 2.3e-231 805.4 473 80.8
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 3.0e-231 805.1 479 79.3
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 1.1e-230 803.1 481 79.4
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 2.5e-230 802.0 456 82.7
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 2.5e-230 802.0 473 79.9
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 3.3e-230 801.6 480 79.0
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 3.3e-230 801.6 473 80.1
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 9.6e-230 800.0 482 79.9
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 9.6e-230 800.0 480 80.0
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 1.6e-229 799.3 479 79.3
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 1.6e-229 799.3 486 78.4
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 2.8e-229 798.5 454 83.5
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 6.2e-229 797.3 473 80.5
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 1.2e-227 793.1 479 79.1
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 2.0e-227 792.3 504 76.4
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 3.4e-227 791.6 475 80.2
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 2.2e-226 788.9 445 83.8
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 3.8e-226 788.1 470 78.7
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 1.4e-225 786.2 474 79.5
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 2.5e-225 785.4 444 83.8
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 2.5e-225 785.4 478 78.0
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 1.0e-223 780.0 455 79.1
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.1e-222 776.5 492 76.6
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 2.5e-222 775.4 473 78.2
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 6.3e-221 770.8 456 78.1
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 4.3e-214 748.0 475 75.4
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 9.7e-214 746.9 507 73.4
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 1.7e-213 746.1 479 75.6
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 4.1e-212 741.5 479 74.9
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 1.2e-211 740.0 476 75.2
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 5.0e-210 734.6 455 79.1
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 8.5e-210 733.8 501 72.1
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 3.3e-206 721.8 454 74.4
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 4.5e-203 711.4 449 74.4
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 2.9e-202 708.8 476 72.1
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 1.7e-197 693.0 473 69.6
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 6.3e-197 691.0 494 71.1
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 5.3e-196 688.0 481 70.7
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 2.5e-193 679.1 385 82.3
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 6.8e-183 644.4 483 67.3
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 1.5e-177 626.7 468 66.9
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 5.2e-175 618.2 367 77.4
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 5.4e-172 608.2 367 76.6
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 9.5e-169 597.4 463 65.9
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 3.1e-159 565.8 475 61.7
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 1.3e-146 523.9 420 65.5
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 1.2e-142 510.8 304 77.3
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 1.7e-138 496.9 410 59.5
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 6.6e-138 495.0 281 83.6
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 2.5e-137 493.0 284 82.7
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 7.3e-137 491.5 304 75.7
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 1.7e-133 480.3 440 54.1
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 2.8e-128 463.0 307 73.0
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 7.4e-121 438.3 304 69.1
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 2.3e-114 416.8 417 54.9
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 1.6e-107 394.0 464 51.1
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 3.7e-104 382.9 256 72.7
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 4.5e-102 375.9 211 83.9
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 6.7e-98 362.1 228 75.9
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 6.7e-98 362.1 228 75.9
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 2.9e-93 346.7 428 49.3
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 7.7e-86 322.0 200 78.0
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 4.2e-84 316.2 181 82.3
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 2.7e-83 313.5 181 81.8
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 1.5e-68 264.6 148 77.7
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 1.7e-64 251.1 172 67.4
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 2.2e-64 250.8 172 67.4
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 5.8e-49 199.5 111 83.8
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 3.2e-47 193.7 99 83.8
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 3.2e-47 193.7 99 83.8
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 7.3e-36 156.0 105 69.5
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 3.1e-34 150.6 97 72.2
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 8.9e-34 149.1 95 78.9
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 1.0e-29 135.6 77 79.2
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 1.9e-28 131.3 80 72.5
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 4.0e-26 123.6 77 75.3
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 2.1e-22 111.3 141 41.1
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 1.3e-21 108.6 68 72.1
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 1.9e-20 104.8 76 65.8
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 1.6e-19 101.7 56 80.4
C07p46470 Brassica napus HOM05D001159 ORTHO05D011383 1.6e-14 85.1 56 73.2
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 2.1e-14 84.7 72 59.7
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 2.1e-14 84.7 72 59.7
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 7.9e-14 82.8 105 49.5
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 1.8e-13 81.6 54 70.4
BcaC05g27566 Brassica carinata HOM05D001159 ORTHO05D011383 2.3e-13 81.3 56 71.4
C05p35490 Brassica napus HOM05D001159 ORTHO05D011383 2.3e-13 81.3 56 71.4
C09p03000 Brassica napus HOM05D001159 ORTHO05D011383 3.0e-13 80.9 56 69.6
BolC9t53230H Brassica oleracea HOM05D001159 ORTHO05D011383 3.0e-13 80.9 56 69.6
BolC7t45165H Brassica oleracea HOM05D001159 ORTHO05D011383 5.1e-13 80.1 56 71.4
C03p16540 Brassica napus HOM05D004186 ORTHO05D011383 2.5e-12 77.8 86 48.8
BcaC01g06364 Brassica carinata HOM05D004186 ORTHO05D011383 4.3e-12 77.0 82 51.2
C08p17140 Brassica napus HOM05D004186 ORTHO05D011383 5.6e-12 76.6 56 64.3
BolC8t49341H Brassica oleracea HOM05D004186 ORTHO05D011383 5.6e-12 76.6 56 64.3
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 4.8e-11 73.6 35 88.6
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 1.2e-09 68.9 64 60.9
BcaC07g38783 Brassica carinata HOM05D002592 ORTHO05D011383 4.9e-08 63.5 49 59.2
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 4.2e-07 60.5 35 77.1
Lsat_1_v5_gn_0_38501 Lactuca sativa HOM05D002067 ORTHO05D002244 2.7e-06 57.8 60 50.0
C08p01710 Brassica napus HOM05D002592 ORTHO05D011383 3.5e-06 57.4 45 62.2
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 7.9e-06 56.2 34 73.5


User provided reference genes

Program Settings