Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR264510 Cardamine hirsuta HOM05D000816 ORTHO05D116356 2.5e-40 168.3 84 100.0
Sp6g13870 Schrenkiella parvula HOM05D000816 ORTHO05D001425 3.2e-19 98.2 48 93.8
Thhalv10013415m.g Eutrema salsugineum HOM05D000816 ORTHO05D001425 4.1e-19 97.8 48 91.7
AT5G51670 Arabidopsis thaliana HOM05D000816 ORTHO05D001425 1.6e-18 95.9 48 89.6
CARHR264450 Cardamine hirsuta HOM05D000816 ORTHO05D001425 1.6e-18 95.9 48 89.6
AL8G25920 Arabidopsis lyrata HOM05D000816 ORTHO05D001425 6.0e-18 94.0 48 87.5
BcaC03g14582 Brassica carinata HOM05D000816 ORTHO05D001425 1.3e-17 92.8 48 87.5
BolC2t08160H Brassica oleracea HOM05D000816 ORTHO05D001425 1.3e-17 92.8 48 87.5
C02p20280 Brassica napus HOM05D000816 ORTHO05D001425 2.3e-17 92.0 48 85.4
A02p12170 Brassica napus HOM05D000816 ORTHO05D001425 3.0e-17 91.7 48 85.4
BraA02t06281Z Brassica rapa HOM05D000816 ORTHO05D001425 3.0e-17 91.7 48 85.4
Carub.0008s1169 Capsella rubella HOM05D000816 ORTHO05D001425 3.9e-17 91.3 48 87.5
Aa31LG3G8100 Aethionema arabicum HOM05D000816 ORTHO05D001425 6.2e-15 84.0 48 79.2
THA.LOC104811507 Tarenaya hassleriana HOM05D000816 ORTHO05D001425 5.2e-14 80.9 48 75.0
Manes.14G032800 Manihot esculenta HOM05D000816 ORTHO05D001425 7.8e-10 67.0 48 62.5
Lj1P985T14 Lonicera japonica HOM05D000816 ORTHO05D001425 1.3e-09 66.2 48 58.3
Oeu030166.1 Olea europaea HOM05D000816 ORTHO05D001425 3.9e-09 64.7 47 57.4
ClCG05G007510 Citrullus lanatus HOM05D000816 ORTHO05D001425 5.1e-09 64.3 48 58.3
PSO782G3545 Papaver somniferum HOM05D000816 ORTHO05D001425 5.1e-09 64.3 48 60.4
CANSAT21G0575 Cannabis sativa HOM05D000816 ORTHO05D001425 6.6e-09 63.9 48 54.2
Lsat_1_v5_gn_2_129700 Lactuca sativa HOM05D000816 ORTHO05D001425 6.6e-09 63.9 48 62.5
CiPaw.03G097000 Carya illinoinensis HOM05D000816 ORTHO05D001425 8.7e-09 63.5 48 58.3
ECA238G1836 Erigeron canadensis HOM05D000816 ORTHO05D001425 1.1e-08 63.2 48 60.4
Manes.06G138500 Manihot esculenta HOM05D000816 ORTHO05D001425 1.1e-08 63.2 48 58.3
PSO478G1268 Papaver somniferum HOM05D000816 ORTHO05D001425 1.1e-08 63.2 46 60.9
HanXRQChr09g0263701 Helianthus annuus HOM05D000816 ORTHO05D001425 1.5e-08 62.8 48 58.3
Atru.chr1.625 Acer truncatum HOM05D000816 ORTHO05D001425 1.9e-08 62.4 48 60.4
CSS0021658 Camellia sinensis var. sinensis HOM05D000816 ORTHO05D001425 1.9e-08 62.4 48 56.2
Actinidia13551 Actinidia chinensis HOM05D000816 ORTHO05D001425 3.3e-08 61.6 48 54.2
Duzib084G1238 Durio zibethinus HOM05D000816 ORTHO05D001425 3.3e-08 61.6 48 56.2
TWI39G1212 Tripterygium wilfordii HOM05D000816 ORTHO05D001425 3.3e-08 61.6 48 58.3
PGSC0003DMG400031011 Solanum tuberosum HOM05D000816 ORTHO05D001425 5.6e-08 60.8 48 56.2
Lalb_Chr02g0149961 Lupinus albus HOM05D000816 ORTHO05D001425 7.3e-08 60.5 49 61.2
Sabra12G0097800 Salix brachista HOM05D000816 ORTHO05D001425 7.3e-08 60.5 48 58.3
Sabra15G0144800 Salix brachista HOM05D000816 ORTHO05D001425 7.3e-08 60.5 48 56.2
Nn1g01205 Nelumbo nucifera HOM05D000816 ORTHO05D001425 9.6e-08 60.1 48 56.2
Solyc03g007090.1 Solanum lycopersicum HOM05D000816 ORTHO05D001425 9.6e-08 60.1 48 56.2
Ciclev10004928m.g Citrus clementina HOM05D000816 ORTHO05D001425 1.2e-07 59.7 48 58.3
Potri.015G131800 Populus trichocarpa HOM05D000816 ORTHO05D001425 1.2e-07 59.7 48 56.2
QL12p039606 Quercus lobata HOM05D000816 ORTHO05D001425 1.6e-07 59.3 48 50.0
Thecc.03G162600 Theobroma cacao HOM05D000816 ORTHO05D001425 1.6e-07 59.3 48 54.2
TWI23G0035 Tripterygium wilfordii HOM05D000816 ORTHO05D001425 1.6e-07 59.3 48 54.2
Ca_09890_v3 Cicer arietinum L. HOM05D000816 ORTHO05D001425 2.1e-07 58.9 55 58.2
Gohir.D11G007400 Gossypium hirsutum HOM05D000816 ORTHO05D001425 2.1e-07 58.9 48 54.2
Gorai.007G008900 Gossypium raimondii HOM05D000816 ORTHO05D001425 2.1e-07 58.9 48 54.2
Rhsim03G0172100 Rhododendron simsii HOM05D000816 ORTHO05D001425 2.1e-07 58.9 49 57.1
MELO3C006836.2 Cucumis melo HOM05D000816 ORTHO05D001425 2.8e-07 58.5 48 56.2
RcHm_v2.0_Chr1g0375201 Rosa chinensis HOM05D000816 ORTHO05D001425 2.8e-07 58.5 49 51.0
Sopen03g003080 Solanum pennellii HOM05D000816 ORTHO05D001425 2.8e-07 58.5 48 54.2
Sed0021876 Sechium edule HOM05D000816 ORTHO05D001425 3.6e-07 58.2 48 50.0
COL.COLO4_14186 Corchorus olitorius HOM05D000816 ORTHO05D001425 4.7e-07 57.8 48 54.2
CsaV3_3G016370 Cucumis sativus L. HOM05D000816 ORTHO05D001425 4.7e-07 57.8 48 56.2
DCAR_009435 Daucus carota HOM05D000816 ORTHO05D001425 4.7e-07 57.8 47 53.2
Hma1.2p1_0654F.1_g196370 Hydrangea macrophylla HOM05D000816 ORTHO05D001425 4.7e-07 57.8 70 44.3
Nitab4.5_0000072g0330 Nicotiana tabacum HOM05D000816 ORTHO05D001425 4.7e-07 57.8 48 50.0
Cpa.g.sc3.263 Carica papaya HOM05D000816 ORTHO05D001425 6.2e-07 57.4 48 52.1
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 6.2e-07 57.4 48 47.9
Cc02_g03850 Coffea canephora HOM05D000816 ORTHO05D001425 8.1e-07 57.0 47 53.2
Gohir.A11G008200 Gossypium hirsutum HOM05D000816 ORTHO05D001425 8.1e-07 57.0 48 52.1
Nitab4.5_0013050g0010 Nicotiana tabacum HOM05D000816 ORTHO05D001425 8.1e-07 57.0 48 50.0
TAR375G0762 Trochodendron aralioides HOM05D000816 ORTHO05D001425 8.1e-07 57.0 48 52.1
CAN.G916.6 Capsicum annuum HOM05D000816 ORTHO05D001425 1.1e-06 56.6 48 47.9
Prupe.2G282900 Prunus persica HOM05D000816 ORTHO05D001425 1.1e-06 56.6 49 53.1
Sed0002889 Sechium edule HOM05D000816 ORTHO05D001425 1.1e-06 56.6 48 52.1
CiPaw.04G063200 Carya illinoinensis HOM05D000816 ORTHO05D001425 1.4e-06 56.2 48 52.1
SGA_v2.0_scaffold2G01133 Striga asiatica HOM05D000816 ORTHO05D001425 1.8e-06 55.8 48 50.0
MSTRG.27167 Avicennia marina HOM05D000816 ORTHO05D001425 2.4e-06 55.5 48 45.8
DCAR_018128 Daucus carota HOM05D000816 ORTHO05D001425 2.4e-06 55.5 48 50.0
Glyma.10G178300 Glycine max HOM05D000816 ORTHO05D001425 2.4e-06 55.5 49 57.1
HanXRQChr15g0486141 Helianthus annuus HOM05D000816 ORTHO05D001425 2.4e-06 55.5 51 49.0
Lj5g0009170 Lotus japonicus HOM05D000816 ORTHO05D001425 2.4e-06 55.5 49 55.1
MD07G1258400 Malus domestica HOM05D000816 ORTHO05D001425 2.4e-06 55.5 49 55.1
Peaxi162Scf00192g00102 Petunia axillaris HOM05D000816 ORTHO05D001425 2.4e-06 55.5 48 50.0
Duzib205G1682 Durio zibethinus HOM05D000816 ORTHO05D001425 3.1e-06 55.1 47 51.1
Glyma.20G211800 Glycine max HOM05D000816 ORTHO05D001425 3.1e-06 55.1 49 55.1
Potri.012G129900 Populus trichocarpa HOM05D000816 ORTHO05D001425 3.1e-06 55.1 48 50.0
FvH4_7g28220 Fragaria vesca HOM05D000816 ORTHO05D001425 4.0e-06 54.7 49 49.0
FAN01G1969 Fragaria x ananassa HOM05D000816 ORTHO05D001425 4.0e-06 54.7 49 49.0
FAN03G1263 Fragaria x ananassa HOM05D000816 ORTHO05D001425 4.0e-06 54.7 49 49.0
FAN03G2377 Fragaria x ananassa HOM05D000816 ORTHO05D001425 4.0e-06 54.7 49 49.0
FAN06G2794 Fragaria x ananassa HOM05D000816 ORTHO05D001425 4.0e-06 54.7 49 49.0
FAN06G4987 Fragaria x ananassa HOM05D000816 ORTHO05D001425 4.0e-06 54.7 49 49.0
Lalb_Chr03g0033071 Lupinus albus HOM05D000816 ORTHO05D001425 4.0e-06 54.7 48 54.2
Nn4g26423 Nelumbo nucifera HOM05D000816 ORTHO05D001425 4.0e-06 54.7 48 47.9
Haze_13826 Corylus avellana HOM05D000816 ORTHO05D001425 5.2e-06 54.3 48 45.8
Glyma.09G152900 Glycine max HOM05D000816 ORTHO05D001425 5.2e-06 54.3 48 50.0
Medtr0318s0020 Medicago truncatula HOM05D000816 ORTHO05D001425 5.2e-06 54.3 55 52.7
Migut.F00425 Erythranthe guttata HOM05D000816 ORTHO05D001425 9.0e-06 53.5 48 45.8
MD01G1186200 Malus domestica HOM05D000816 ORTHO05D001425 9.0e-06 53.5 49 53.1


User provided reference genes

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