Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 9.3e-131 470.3 254 100.0
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 5.3e-118 427.9 254 87.8
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 6.9e-118 427.6 254 89.8
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 2.0e-117 426.0 254 87.8
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 2.2e-116 422.5 254 87.8
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 3.8e-116 421.8 254 88.2
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 1.1e-112 410.2 255 83.9
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 4.8e-111 404.8 255 83.5
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 4.8e-111 404.8 255 83.5
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 8.2e-111 404.1 255 83.5
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 3.1e-110 402.1 250 83.2
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 1.0e-105 387.1 255 80.4
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 2.1e-98 362.8 254 75.6
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 2.1e-98 362.8 254 77.6
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 8.2e-95 350.9 256 72.3
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 2.2e-87 326.2 255 67.8
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 1.7e-84 316.6 254 63.8
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 2.2e-84 316.2 255 65.5
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 2.9e-84 315.8 255 65.1
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 6.5e-84 314.7 255 66.7
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 8.5e-84 314.3 255 65.9
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.9e-83 313.2 255 65.5
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 9.4e-83 310.8 255 64.7
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.2e-82 310.5 254 64.2
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 1.2e-82 310.5 255 65.5
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 3.0e-81 305.8 254 64.6
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 1.7e-79 300.1 254 62.2
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 2.8e-79 299.3 254 61.4
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 3.7e-79 298.9 255 62.4
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 2.2e-76 289.7 257 63.4
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 8.5e-76 287.7 257 63.0
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 8.5e-76 287.7 257 63.0
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 1.9e-75 286.6 258 62.4
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 1.9e-75 286.6 257 61.9
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 2.1e-74 283.1 254 58.7
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 4.7e-74 282.0 260 61.5
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 4.0e-73 278.9 258 60.1
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 5.2e-73 278.5 258 59.7
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 6.8e-73 278.1 259 59.5
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 6.8e-73 278.1 254 59.4
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 3.4e-72 275.8 259 59.1
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 1.7e-71 273.5 256 59.4
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 2.2e-71 273.1 256 59.4
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 8.3e-71 271.2 258 58.5
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 8.3e-71 271.2 255 62.0
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 7.0e-70 268.1 247 59.9
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 1.6e-69 266.9 254 56.3
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 4.5e-69 265.4 257 57.2
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 4.5e-69 265.4 252 57.9
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 4.5e-69 265.4 253 56.5
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 7.7e-69 264.6 255 58.0
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 1.0e-68 264.2 261 56.3
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 1.0e-68 264.2 254 57.1
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 1.3e-68 263.8 253 56.5
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 1.3e-68 263.8 260 56.5
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 3.8e-68 262.3 256 57.0
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 3.8e-68 262.3 257 56.4
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 8.5e-68 261.2 258 55.8
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 1.5e-67 260.4 258 55.4
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 2.5e-67 259.6 259 56.4
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 4.2e-67 258.8 254 57.5
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 4.2e-67 258.8 258 55.0
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 5.5e-67 258.5 251 57.0
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 7.2e-67 258.1 256 57.8
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 9.4e-67 257.7 243 58.4
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 1.2e-66 257.3 255 56.5
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 1.2e-66 257.3 255 56.5
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 1.2e-66 257.3 252 58.3
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 1.6e-66 256.9 261 57.1
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 1.6e-66 256.9 257 57.6
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 2.1e-66 256.5 239 59.4
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 4.7e-66 255.4 256 56.2
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 1.4e-65 253.8 244 59.4
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 3.0e-65 252.7 260 54.2
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 4.0e-65 252.3 252 58.3
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 4.0e-65 252.3 246 57.7
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 1.2e-64 250.8 253 56.9
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 1.2e-64 250.8 254 57.1
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 2.0e-64 250.0 253 56.5
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 3.4e-64 249.2 244 56.6
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 3.4e-64 249.2 260 55.8
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 4.4e-64 248.8 254 55.9
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 7.5e-64 248.1 254 53.1
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 2.2e-63 246.5 246 56.5
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 2.2e-63 246.5 244 57.8
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 2.2e-63 246.5 244 57.0
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 4.9e-63 245.4 244 57.8
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 8.3e-63 244.6 178 69.1
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 8.3e-63 244.6 246 56.5
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 1.8e-62 243.4 257 53.7
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 1.8e-62 243.4 257 55.6
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 3.1e-62 242.7 260 52.3
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 5.4e-62 241.9 232 59.1
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 9.2e-62 241.1 244 56.6
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 2.7e-61 239.6 252 55.2
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 5.9e-61 238.4 252 55.2
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 2.9e-60 236.1 247 54.7
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 8.6e-60 234.6 251 55.4
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 1.5e-59 233.8 254 53.5
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 1.2e-58 230.7 264 52.3
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 6.1e-58 228.4 259 53.3
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 1.4e-57 227.3 226 57.1
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 3.0e-57 226.1 263 51.0
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 8.9e-57 224.6 242 54.1
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 2.0e-56 223.4 254 52.8
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 1.7e-55 220.3 243 53.1
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 7.0e-54 214.9 254 49.2
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 1.2e-53 214.2 245 51.8
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 2.0e-53 213.4 254 50.8
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 3.9e-52 209.1 236 53.8
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 8.3e-47 191.4 183 56.8
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 7.8e-45 184.9 124 75.0
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 3.6e-42 176.0 193 51.8
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 2.6e-40 169.9 131 67.2
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 1.7e-36 157.1 192 47.9
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 5.6e-27 125.6 131 54.2
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 2.9e-23 113.2 234 35.9
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 3.8e-23 112.8 257 36.2
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 2.4e-22 110.2 173 41.0
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 3.2e-22 109.8 145 44.8
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 4.6e-21 105.9 137 48.2
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 2.1e-18 97.1 75 68.0
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 6.2e-18 95.5 109 52.3
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 9.0e-17 91.7 79 68.4
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 4.9e-15 85.9 152 39.5
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 6.0e-13 79.0 95 47.4
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 2.8e-10 70.1 117 38.5
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 1.4e-09 67.8 62 51.6
RcHm_v2.0_Chr3g0451651 Rosa chinensis HOM05D005854 ORTHO05D007175 2.0e-08 63.9 55 61.8
Nn3g18457 Nelumbo nucifera HOM05D005854 ORTHO05D007175 2.2e-07 60.5 84 42.9


User provided reference genes

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