Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR246430 Cardamine hirsuta HOM05D007191 ORTHO05D009370 1.3e-202 709.5 356 100.0
Thhalv10025567m.g Eutrema salsugineum HOM05D007191 ORTHO05D009370 2.0e-176 622.5 357 88.0
AL7G12620 Arabidopsis lyrata HOM05D007191 ORTHO05D009370 2.7e-176 622.1 355 88.7
Sp7g35660 Schrenkiella parvula HOM05D007191 ORTHO05D009370 4.7e-173 611.3 357 87.1
Carub.0007s0220 Capsella rubella HOM05D007191 ORTHO05D009370 1.1e-172 610.1 356 85.7
AT4G38020 Arabidopsis thaliana HOM05D007191 ORTHO05D009370 8.9e-172 607.1 351 87.2
BolC1t00117H Brassica oleracea HOM05D007191 ORTHO05D009370 5.1e-159 564.7 350 82.6
A01p01070 Brassica napus HOM05D007191 ORTHO05D009370 1.1e-158 563.5 351 83.2
BraA01t00105Z Brassica rapa HOM05D007191 ORTHO05D009370 1.1e-158 563.5 351 83.2
BcaNung00953 Brassica carinata HOM05D007191 ORTHO05D009370 1.5e-158 563.1 350 82.3
C01p01190 Brassica napus HOM05D007191 ORTHO05D009370 1.9e-158 562.8 350 82.3
BcaNung05371 Brassica carinata HOM05D007191 ORTHO05D009370 2.2e-154 549.3 352 81.2
Aa31LG6G14960 Aethionema arabicum HOM05D007191 ORTHO05D009370 1.0e-143 513.8 378 69.8
THA.LOC104804178 Tarenaya hassleriana HOM05D007191 ORTHO05D009370 1.6e-133 479.9 321 75.4
Cpa.g.sc55.6 Carica papaya HOM05D007191 ORTHO05D009370 5.3e-116 421.8 354 63.8
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 1.1e-113 414.1 300 68.0
CsaV3_3G006990 Cucumis sativus L. HOM05D007191 ORTHO05D009370 9.4e-113 411.0 292 68.5
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 9.4e-113 411.0 325 65.5
Dinv36956 Davidia involucrata HOM05D007191 ORTHO05D009370 2.7e-112 409.5 346 61.6
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 4.6e-112 408.7 294 69.4
Dinv13563 Davidia involucrata HOM05D007191 ORTHO05D009370 6.1e-112 408.3 300 67.3
MELO3C014951.2 Cucumis melo HOM05D007191 ORTHO05D009370 1.0e-111 407.5 292 68.8
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 3.0e-111 406.0 293 68.6
ClCG10G008240 Citrullus lanatus HOM05D007191 ORTHO05D009370 5.7e-110 401.7 293 67.9
FvH4_1g19321 Fragaria vesca HOM05D007191 ORTHO05D009370 1.4e-108 397.1 309 65.0
Ciclev10025907m.g Citrus clementina HOM05D007191 ORTHO05D009370 5.3e-108 395.2 291 67.0
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 5.3e-108 395.2 315 64.1
RcHm_v2.0_Chr2g0110691 Rosa chinensis HOM05D007191 ORTHO05D003232 5.3e-108 395.2 293 68.3
Atru.chr3.1215 Acer truncatum HOM05D007191 ORTHO05D009370 6.9e-108 394.8 352 60.5
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 6.9e-108 394.8 326 60.7
Thecc.01G088100 Theobroma cacao HOM05D007191 ORTHO05D009370 3.4e-107 392.5 322 63.0
COL.COLO4_27378 Corchorus olitorius HOM05D007191 ORTHO05D009370 5.9e-107 391.7 295 65.8
Gohir.A11G207400 Gossypium hirsutum HOM05D007191 ORTHO05D009370 5.9e-107 391.7 323 63.5
FAN19G2137 Fragaria x ananassa HOM05D007191 ORTHO05D000122 1.3e-106 390.6 305 64.9
FAN19G0835 Fragaria x ananassa HOM05D007191 ORTHO05D000122 1.7e-106 390.2 305 64.6
TWI74G0882 Tripterygium wilfordii HOM05D007191 ORTHO05D009370 1.7e-106 390.2 364 58.8
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 2.9e-106 389.4 291 67.0
Manes.13G101800 Manihot esculenta HOM05D007191 ORTHO05D009370 2.9e-106 389.4 297 64.6
CSS0046556 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 5.0e-106 388.7 288 67.4
Peaxi162Scf00085g00523 Petunia axillaris HOM05D007191 ORTHO05D009370 8.5e-106 387.9 288 68.4
Actinidia25299 Actinidia chinensis HOM05D007191 ORTHO05D009370 1.4e-105 387.1 346 60.1
Haze_03901 Corylus avellana HOM05D007191 ORTHO05D009370 3.2e-105 386.0 417 51.6
vmacro13023 Vaccinium macrocarpon HOM05D007191 ORTHO05D009370 3.2e-105 386.0 323 61.9
Gorai.007G232000 Gossypium raimondii HOM05D007191 ORTHO05D009370 7.2e-105 384.8 323 62.8
Gohir.D11G215700 Gossypium hirsutum HOM05D007191 ORTHO05D009370 9.4e-105 384.4 323 62.8
Manes.13G092280 Manihot esculenta HOM05D007191 ORTHO05D009370 2.1e-104 383.3 297 63.6
Duzib147G1243 Durio zibethinus HOM05D007191 ORTHO05D009370 2.7e-104 382.9 312 63.1
Psat4g117600 Pisum sativum HOM05D007191 ORTHO05D009370 7.9e-104 381.3 299 62.9
MBI16_g30311_MAGBIO Magnolia biondii HOM05D007191 ORTHO05D009370 2.3e-103 379.8 281 68.7
CANSAT01G2982 Cannabis sativa HOM05D007191 ORTHO05D009370 3.0e-103 379.4 291 66.0
Sopen11g005640 Solanum pennellii HOM05D007191 ORTHO05D009370 3.0e-103 379.4 315 62.2
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 1.1e-102 377.5 321 58.9
Solyc11g010900.2 Solanum lycopersicum HOM05D007191 ORTHO05D009370 1.5e-102 377.1 315 61.6
Ca_22623_v3 Cicer arietinum L. HOM05D007191 ORTHO05D009370 1.7e-101 373.6 313 61.0
Medtr8g068220 Medicago truncatula HOM05D007191 ORTHO05D009370 4.8e-101 372.1 283 65.4
HanXRQChr09g0259541 Helianthus annuus HOM05D007191 ORTHO05D009370 6.3e-101 371.7 288 65.6
Glyma.08G276900 Glycine max HOM05D007191 ORTHO05D009370 1.4e-100 370.5 283 64.3
PSO675G0552 Papaver somniferum HOM05D007191 ORTHO05D009370 3.1e-100 369.4 317 60.3
Cfa006863 Carpinus fangiana HOM05D007191 ORTHO05D000122 9.1e-100 367.9 378 55.6
AUR62003688 Chenopodium quinoa HOM05D007191 ORTHO05D009370 1.2e-99 367.5 290 64.1
TPR.G29816 Trifolium pratense HOM05D007191 ORTHO05D009370 2.0e-99 366.7 320 59.1
Aqoxy6G01485 Aquilegia oxysepala HOM05D007191 ORTHO05D009370 4.5e-99 365.5 288 62.5
Lalb_Chr16g0392111 Lupinus albus HOM05D007191 ORTHO05D009370 1.3e-98 364.0 283 64.3
AUR62018000 Chenopodium quinoa HOM05D007191 ORTHO05D009370 1.7e-98 363.6 348 55.7
VMungo0251G2065 Vigna mungo HOM05D007191 ORTHO05D009370 1.7e-98 363.6 283 63.6
Phvul.003G287700 Phaseolus vulgaris HOM05D007191 ORTHO05D009370 2.2e-98 363.2 283 63.3
Sed0016887 Sechium edule HOM05D007191 ORTHO05D009370 6.5e-98 361.7 291 63.6
Lj4g0026970 Lotus japonicus HOM05D007191 ORTHO05D009370 2.5e-97 359.8 283 65.0
arahy.Tifrunner.gnm1.ann1.DV4H7C Arachis hypogaea HOM05D007191 ORTHO05D009370 4.2e-97 359.0 283 65.0
Nitab4.5_0005446g0010 Nicotiana tabacum HOM05D007191 ORTHO05D009370 7.2e-97 358.2 317 61.2
PSO541G2681 Papaver somniferum HOM05D007191 ORTHO05D009370 9.4e-97 357.8 312 59.6
Potri.005G147600 Populus trichocarpa HOM05D007191 ORTHO05D009370 6.1e-96 355.1 286 63.6
Ah.03g143260 Amaranthus hybridus HOM05D007191 ORTHO05D009370 8.8e-95 351.3 286 62.9
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 4.4e-94 349.0 293 59.7
Oeu017115.1 Olea europaea HOM05D007191 ORTHO05D009370 9.7e-94 347.8 338 54.7
CDE04G1458 Ceratophyllum demersum HOM05D007191 ORTHO05D009370 1.3e-93 347.4 290 60.0
Sabra05G0118000 Salix brachista HOM05D007191 ORTHO05D009370 3.1e-92 342.8 291 61.5
Migut.H02278 Erythranthe guttata HOM05D007191 ORTHO05D009370 2.7e-91 339.7 315 57.1
Nn5g29827 Nelumbo nucifera HOM05D007191 ORTHO05D009370 3.8e-90 335.9 303 57.4
Sc03g0000490 Simmondsia chinensis HOM05D007191 ORTHO05D009370 5.5e-89 332.0 275 60.0
SalBow3G4077 Salvia bowleyana HOM05D007191 ORTHO05D009370 2.7e-88 329.7 306 57.5
arahy.Tifrunner.gnm1.ann1.6T17AW Arachis hypogaea HOM05D007191 ORTHO05D009370 5.4e-84 315.5 283 60.1
Os03g0685100 Oryza sativa ssp. japonica HOM05D007191 ORTHO05D009370 1.7e-82 310.5 284 56.3
CAN.G1771.10 Capsicum annuum HOM05D007191 ORTHO05D009370 3.8e-82 309.3 249 62.2
DCAR_003441 Daucus carota HOM05D007191 ORTHO05D003232 1.9e-81 307.0 245 63.7
unitig_27.g25347 Utricularia gibba HOM05D007191 ORTHO05D009370 1.9e-81 307.0 301 54.2
SGA_v2.0_scaffold108G30936 Striga asiatica HOM05D007191 ORTHO05D009370 2.7e-80 303.1 304 53.9
ECA232G3284 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.7e-77 292.7 244 61.1
HPP92_014152 Vanilla planifolia HOM05D007191 ORTHO05D009370 4.5e-75 285.8 294 53.1
Lj2A526T20 Lonicera japonica HOM05D007191 ORTHO05D009370 2.9e-74 283.1 336 47.9
PGSC0003DMG400016118 Solanum tuberosum HOM05D007191 ORTHO05D009370 3.3e-73 279.6 199 67.8
HPP92_014172 Vanilla planifolia HOM05D007191 ORTHO05D009370 1.4e-71 274.2 303 50.8
SMO364G0498 Selaginella moellendorffii HOM05D007191 ORTHO05D009370 1.8e-71 273.9 297 47.8
Zm00001eb053350 Zea mays HOM05D007191 ORTHO05D009370 6.4e-69 265.4 265 52.1
Pp3c5_6200 Physcomitrium patens HOM05D007191 ORTHO05D009370 1.1e-68 264.6 309 46.0
CBR_g31860 Chara braunii HOM05D000601 ORTHO05D000407 1.2e-64 251.1 304 44.4
Mapoly0036s0111 Marchantia polymorpha HOM05D007191 ORTHO05D009370 4.7e-64 249.2 323 45.5
Pp3c5_6210 Physcomitrium patens HOM05D007191 ORTHO05D009370 8.3e-53 211.8 226 47.8
AUR62043608 Chenopodium quinoa HOM05D007191 ORTHO05D009370 1.9e-52 210.7 148 67.6
PGR102G1719 Punica granatum HOM05D007191 ORTHO05D009370 7.3e-49 198.7 190 55.3
MCO07G132 Micromonas commoda HOM05D007191 ORTHO05D009370 8.9e-47 191.8 292 38.0
AUR62014153 Chenopodium quinoa HOM05D007191 ORTHO05D002709 3.4e-46 189.9 137 65.0
Cc00_g34880 Coffea canephora HOM05D007191 ORTHO05D009370 7.6e-46 188.7 156 60.9
Cre17.g744947 Chlamydomonas reinhardtii HOM05D007191 ORTHO05D009370 6.2e-40 169.1 358 34.4
PRCOL_00003319 Prasinoderma coloniale HOM05D007191 ORTHO05D009370 1.6e-35 154.5 303 36.6
SEGI_38116 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 8.1e-32 142.1 163 46.0
SEGI_29034 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 2.7e-27 127.1 146 46.6
Cc07_g13870 Coffea canephora HOM05D007191 ORTHO05D003232 1.1e-20 105.1 70 67.1
Cc07_g13860 Coffea canephora HOM05D007191 ORTHO05D009370 1.8e-18 97.8 80 61.2
RcHm_v2.0_Chr6g0269301 Rosa chinensis HOM05D007191 ORTHO05D009370 2.3e-18 97.4 100 51.0
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 2.5e-12 77.4 152 36.8
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 1.5e-09 68.2 212 30.7
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 9.6e-09 65.5 214 29.0
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 6.3e-08 62.8 243 26.7
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 1.1e-07 62.0 244 27.0
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 1.4e-07 61.6 242 27.3
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 1.4e-07 61.6 212 27.4
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 2.4e-07 60.8 210 28.6
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 3.1e-07 60.5 218 27.5
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 3.1e-07 60.5 235 27.7
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 3.1e-07 60.5 230 27.0
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 3.1e-07 60.5 164 31.7
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 3.1e-07 60.5 218 28.0
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 4.1e-07 60.1 214 27.6
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 4.1e-07 60.1 170 32.4
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 4.1e-07 60.1 170 32.4
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 5.3e-07 59.7 242 27.7
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 9.0e-07 58.9 170 31.8
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 1.5e-06 58.2 214 27.6
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 1.5e-06 58.2 182 30.2
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 1.5e-06 58.2 242 26.9
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 2.0e-06 57.8 179 30.2
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 2.0e-06 57.8 241 26.1
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 2.0e-06 57.8 242 25.2
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 3.4e-06 57.0 175 30.3
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 3.4e-06 57.0 224 26.3
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 3.4e-06 57.0 205 28.8
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 4.5e-06 56.6 152 29.6
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 4.5e-06 56.6 237 27.0
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 5.9e-06 56.2 149 28.9


User provided reference genes

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