Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR239610 Cardamine hirsuta HOM05D005002 ORTHO05D006016 5.4e-50 200.7 100 100.0
Duzib168G1591 Durio zibethinus HOM05D005002 ORTHO05D006016 6.8e-37 157.1 103 80.6
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 8.9e-37 156.8 82 96.3
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 8.9e-37 156.8 82 96.3
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 1.2e-36 156.4 82 95.1
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 2.6e-36 155.2 82 93.9
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 2.6e-36 155.2 82 93.9
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 2.6e-36 155.2 82 93.9
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 2.6e-36 155.2 82 93.9
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 3.4e-36 154.8 82 93.9
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 3.4e-36 154.8 82 93.9
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 3.4e-36 154.8 82 93.9
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 7.6e-36 153.7 82 93.9
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 7.6e-36 153.7 82 92.7
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 3.8e-35 151.4 82 90.2
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 4.9e-35 151.0 82 91.5
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 5.4e-34 147.5 82 91.5
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 1.6e-33 146.0 102 70.6
MSTRG.9875 Avicennia marina HOM05D005002 ORTHO05D006016 1.0e-32 143.3 102 73.5
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 1.3e-32 142.9 84 86.9
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 3.0e-32 141.7 84 88.1
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 6.6e-32 140.6 84 86.9
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 1.9e-31 139.0 84 86.9
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 2.5e-31 138.7 86 83.7
COL.COLO4_19003 Corchorus olitorius HOM05D005002 ORTHO05D006016 2.5e-31 138.7 84 85.7
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 3.3e-31 138.3 82 82.9
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 3.3e-31 138.3 84 85.7
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 5.6e-31 137.5 83 86.7
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 7.3e-31 137.1 84 85.7
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 9.6e-31 136.7 70 98.6
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 9.6e-31 136.7 70 98.6
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 9.6e-31 136.7 84 84.5
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 9.6e-31 136.7 82 86.6
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.6e-30 136.0 84 84.5
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.6e-30 136.0 84 84.5
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 1.6e-30 136.0 84 84.5
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 2.8e-30 135.2 84 85.7
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 4.8e-30 134.4 84 84.5
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 4.8e-30 134.4 84 84.5
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 6.2e-30 134.0 84 84.5
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 8.1e-30 133.7 84 85.7
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.1e-29 133.3 84 83.3
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 1.1e-29 133.3 84 81.0
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 1.1e-29 133.3 84 81.0
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.4e-29 132.9 84 83.3
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.4e-29 132.9 84 83.3
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 1.4e-29 132.9 84 83.3
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 1.4e-29 132.9 84 84.5
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 1.8e-29 132.5 84 82.1
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 2.4e-29 132.1 83 81.9
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 2.4e-29 132.1 83 81.9
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 2.4e-29 132.1 84 82.1
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.1e-29 131.7 84 83.3
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 3.1e-29 131.7 84 82.1
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 3.1e-29 131.7 84 79.8
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 3.1e-29 131.7 83 81.9
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 4.0e-29 131.3 84 83.3
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 5.3e-29 131.0 84 79.8
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 5.3e-29 131.0 84 81.0
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 5.3e-29 131.0 83 80.7
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 5.3e-29 131.0 84 82.1
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 5.3e-29 131.0 83 79.5
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 5.3e-29 131.0 83 80.7
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 5.3e-29 131.0 84 81.0
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 5.3e-29 131.0 83 80.7
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 6.9e-29 130.6 82 81.7
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 9.0e-29 130.2 84 82.1
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 1.2e-28 129.8 84 82.1
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 1.2e-28 129.8 84 77.4
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 1.2e-28 129.8 84 77.4
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 1.2e-28 129.8 84 77.4
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.2e-28 129.8 84 82.1
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 1.2e-28 129.8 85 80.0
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 1.5e-28 129.4 83 80.7
RcHm_v2.0_Chr2g0161711 Rosa chinensis HOM05D005002 ORTHO05D006016 1.5e-28 129.4 85 81.2
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 2.0e-28 129.0 84 77.4
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 2.6e-28 128.6 83 77.1
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 3.4e-28 128.3 83 78.3
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 3.4e-28 128.3 84 82.1
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 3.4e-28 128.3 84 76.2
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 4.4e-28 127.9 83 80.7
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 4.4e-28 127.9 83 79.5
Duzib187G1493 Durio zibethinus HOM05D005002 ORTHO05D006016 5.8e-28 127.5 85 80.0
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 5.8e-28 127.5 83 77.1
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 7.6e-28 127.1 84 77.4
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 7.6e-28 127.1 83 79.5
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 7.6e-28 127.1 82 79.3
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 1.3e-27 126.3 83 75.9
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 1.3e-27 126.3 82 78.0
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 2.2e-27 125.6 84 77.4
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 4.9e-27 124.4 82 75.6
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 4.9e-27 124.4 82 75.6
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 6.4e-27 124.0 97 69.1
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 6.4e-27 124.0 92 68.5
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 1.1e-26 123.2 63 93.7
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 1.9e-26 122.5 83 75.9
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 2.4e-26 122.1 88 72.7
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 3.2e-26 121.7 83 75.9
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 3.2e-26 121.7 88 72.7
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 4.2e-26 121.3 90 72.2
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 4.2e-26 121.3 84 72.6
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 4.2e-26 121.3 83 72.3
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 9.3e-26 120.2 83 72.3
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 2.7e-25 118.6 83 72.3
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 3.5e-25 118.2 85 71.8
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 4.6e-25 117.9 110 63.6
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 1.0e-24 116.7 76 78.9
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 1.3e-24 116.3 82 74.4
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 1.3e-24 116.3 83 69.9
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 2.3e-24 115.5 75 80.0
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 3.0e-24 115.2 88 70.5
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 8.7e-24 113.6 76 80.3
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 4.0e-21 104.8 95 63.2
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 1.2e-20 103.2 55 98.2
Nitab4.5_0000668g0030 Nicotiana tabacum HOM05D005002 ORTHO05D006016 2.2e-19 99.0 64 75.0
Lalb_Chr08g0233981 Lupinus albus HOM05D005002 ORTHO05D006016 2.9e-19 98.6 65 75.4
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 4.9e-19 97.8 82 64.6
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 3.2e-18 95.1 62 88.7
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 1.6e-17 92.8 80 62.5
CBR_g30254 Chara braunii HOM05D005002 ORTHO05D006016 4.6e-17 91.3 84 52.4
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 4.6e-17 91.3 81 64.2
MBI15_g18374_MAGBIO Magnolia biondii HOM05D005002 ORTHO05D006016 1.3e-16 89.7 63 69.8
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 3.0e-16 88.6 72 69.4
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.9e-15 85.9 57 84.2
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 4.3e-15 84.7 57 78.9
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 4.3e-15 84.7 57 78.9
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 4.3e-15 84.7 56 87.5
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 5.6e-15 84.3 57 78.9
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 5.6e-15 84.3 58 79.3
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 2.8e-14 82.0 57 80.7
QL12p013723 Quercus lobata HOM05D005002 ORTHO05D006016 6.2e-14 80.9 56 78.6
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 8.1e-14 80.5 57 78.9
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 8.1e-14 80.5 58 74.1
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 2.4e-13 79.0 56 76.8
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 5.3e-13 77.8 91 52.7
SEGI_02469 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 2.0e-12 75.9 62 64.5
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 1.3e-11 73.2 72 45.8
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 1.5e-07 59.7 84 36.9
MCO01G145 Micromonas commoda HOM05D005002 ORTHO05D006016 6.2e-06 54.3 74 39.2


User provided reference genes

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