Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 0.0e+00 1214.9 621 100.0
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 0.0e+00 1114.4 612 93.3
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 0.0e+00 1112.1 612 93.3
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 0.0e+00 1104.0 612 92.2
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 0.0e+00 1096.3 613 91.8
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 0.0e+00 1083.2 612 90.7
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 1.7e-311 1072.0 612 89.9
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 3.0e-311 1071.2 612 88.1
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 1.0e-300 1036.2 627 85.2
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 3.9e-300 1034.2 638 83.7
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 2.0e-299 1031.9 625 85.1
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 4.8e-298 1027.3 625 84.3
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 2.0e-275 952.2 613 80.3
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 2.3e-244 849.0 613 71.0
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 1.2e-243 846.7 621 69.9
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 2.6e-243 845.5 613 70.3
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 4.9e-242 841.3 613 69.7
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 4.1e-241 838.2 622 68.6
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 9.2e-241 837.0 618 68.9
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 4.6e-240 834.7 613 69.3
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 4.6e-240 834.7 613 69.0
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 2.3e-239 832.4 613 68.8
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 3.0e-239 832.0 613 69.2
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 5.1e-239 831.2 622 68.8
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 1.9e-238 829.3 614 69.9
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 2.5e-238 828.9 612 68.5
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 1.2e-237 826.6 618 68.6
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 2.1e-237 825.9 613 68.4
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 2.1e-237 825.9 653 65.7
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 8.9e-236 820.5 613 68.0
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 1.2e-235 820.1 625 68.2
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 1.3e-234 816.6 695 62.7
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 1.4e-233 813.1 613 67.7
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 1.4e-233 813.1 613 67.7
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.9e-233 812.8 620 67.6
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 3.2e-233 812.0 620 67.1
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 2.1e-229 799.3 612 67.0
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 1.8e-228 796.2 614 66.8
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 1.8e-228 796.2 613 67.7
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 4.0e-228 795.0 614 67.8
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 6.9e-228 794.3 583 68.8
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 1.7e-226 789.6 615 66.0
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 3.8e-226 788.5 615 65.5
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 6.4e-226 787.7 615 65.2
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 1.4e-225 786.6 615 66.2
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 4.2e-225 785.0 613 66.4
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 5.4e-225 784.6 678 61.9
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 9.3e-225 783.9 689 60.8
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 1.6e-224 783.1 614 66.8
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 2.7e-224 782.3 620 66.3
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 6.0e-224 781.2 619 64.5
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 2.3e-223 779.2 619 64.3
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 6.6e-223 777.7 614 65.8
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 6.6e-223 777.7 615 66.0
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 8.7e-223 777.3 613 67.0
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 2.5e-222 775.8 652 62.6
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 3.3e-222 775.4 613 65.7
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 1.3e-221 773.5 617 64.2
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 1.6e-221 773.1 613 65.6
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 1.6e-221 773.1 613 66.7
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 1.6e-221 773.1 615 64.2
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 6.2e-221 771.2 614 66.0
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 4.0e-220 768.5 666 62.3
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 2.0e-219 766.1 618 63.8
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 3.4e-219 765.4 622 65.6
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 1.7e-218 763.1 619 63.8
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 8.1e-213 744.2 622 63.2
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 1.8e-212 743.0 590 65.6
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 7.6e-211 737.6 632 61.2
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.9e-210 735.7 625 62.4
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 2.1e-208 729.6 614 61.2
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 4.6e-208 728.4 613 62.5
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 8.7e-207 724.2 616 62.5
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 2.5e-206 722.6 616 63.6
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 1.1e-204 717.2 670 59.3
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 1.3e-202 710.3 640 58.9
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 6.5e-202 708.0 563 64.5
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 1.5e-198 696.8 575 63.3
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 1.5e-198 696.8 567 62.8
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 1.9e-198 696.4 613 61.7
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 7.4e-190 667.9 613 58.1
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 1.4e-185 653.7 495 67.9
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 5.7e-166 588.6 634 51.4
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 4.8e-165 585.5 401 74.1
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.2e-162 576.6 405 72.1
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 9.4e-161 571.2 506 58.7
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 2.7e-160 569.7 405 71.6
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 2.3e-159 566.6 656 48.8
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 2.0e-155 553.5 396 72.0
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 4.5e-155 552.4 448 67.4
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.0e-154 551.2 623 49.9
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 3.3e-153 546.2 613 51.4
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 4.2e-153 545.8 614 50.3
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 1.1e-148 531.2 406 67.7
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 4.1e-148 529.3 414 65.2
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 9.8e-142 508.1 573 49.6
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 8.3e-141 505.0 615 47.3
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 1.1e-140 504.6 399 66.7
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 7.1e-132 475.3 332 73.5
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 2.1e-120 437.2 463 53.3
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 3.6e-112 409.8 574 44.6
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 2.4e-103 380.6 613 39.8
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 1.1e-89 335.1 378 48.1
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 1.8e-82 311.2 224 71.4
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 3.0e-82 310.5 224 71.9
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.1e-81 308.5 256 64.5
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 1.6e-80 304.7 401 46.9
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 3.6e-67 260.4 191 69.6
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 7.4e-65 252.7 313 47.9
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 2.0e-62 244.6 182 69.8
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 1.6e-59 235.0 197 61.9
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 2.1e-59 234.6 188 67.0
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.3e-58 231.1 227 52.9
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.4e-55 221.9 275 45.5
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 3.5e-54 217.2 169 63.3
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 1.1e-52 212.2 165 68.5
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.2e-43 182.2 165 56.4
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.3e-42 177.9 450 32.7
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 3.0e-42 177.6 155 58.1
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 5.2e-42 176.8 197 52.3
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 7.7e-38 162.9 247 42.5
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 1.6e-35 155.2 123 60.2
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.7e-32 144.1 157 47.8
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 7.8e-22 109.8 73 75.3
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 7.8e-22 109.8 412 27.9
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 3.0e-21 107.8 127 48.0
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 2.5e-20 104.8 113 54.9
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 7.3e-20 103.2 82 62.2
CBR_g55305 Chara braunii HOM05D002705 ORTHO05D004955 4.7e-19 100.5 104 46.2
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.6e-17 94.7 138 42.0
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.1e-15 89.4 391 23.8
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 8.6e-13 79.7 91 46.2
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 7.3e-12 76.6 372 25.5
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.1e-10 72.8 138 34.8
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 2.3e-10 71.6 382 23.6
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 2.0e-09 68.6 400 24.8
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 6.4e-08 63.5 166 28.9
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 7.1e-07 60.1 73 52.1
FvH4_3g31690 Fragaria vesca HOM05D000769 ORTHO05D000598 2.1e-06 58.5 42 59.5
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 2.1e-06 58.5 103 42.7
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.1e-06 58.5 461 21.7
SMO115G0155 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 6.0e-06 57.0 69 40.6


User provided reference genes

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