Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR228450 Cardamine hirsuta HOM05D006296 ORTHO05D007777 1.6e-70 269.2 133 100.0
BcaNung00839 Brassica carinata HOM05D006296 ORTHO05D007777 1.5e-60 236.1 141 82.3
BcaNung00841 Brassica carinata HOM05D006296 ORTHO05D007777 1.5e-60 236.1 141 81.6
A03p52890 Brassica napus HOM05D006296 ORTHO05D007777 3.4e-60 235.0 138 83.3
BraA03t14365Z Brassica rapa HOM05D006296 ORTHO05D007777 3.4e-60 235.0 138 83.3
Sp7g19880 Schrenkiella parvula HOM05D006296 ORTHO05D007777 3.4e-60 235.0 137 81.8
BcaC09g51212 Brassica carinata HOM05D006296 ORTHO05D007777 1.1e-58 229.9 137 81.8
A01p13040 Brassica napus HOM05D006296 ORTHO05D007777 1.1e-58 229.9 137 81.8
C01p15710 Brassica napus HOM05D006296 ORTHO05D007777 1.1e-58 229.9 137 81.8
BolC1t01524H Brassica oleracea HOM05D006296 ORTHO05D007777 1.1e-58 229.9 137 81.8
BraA01t01246Z Brassica rapa HOM05D006296 ORTHO05D007777 1.1e-58 229.9 137 81.8
BcaC06g30674 Brassica carinata HOM05D006296 ORTHO05D007777 9.4e-58 226.9 138 80.4
AL7G32220 Arabidopsis lyrata HOM05D006296 ORTHO05D007777 3.6e-57 224.9 140 79.3
AT4G21720 Arabidopsis thaliana HOM05D006296 ORTHO05D007777 6.7e-56 220.7 140 76.4
Thhalv10026538m.g Eutrema salsugineum HOM05D006296 ORTHO05D007777 8.2e-54 213.8 137 75.2
Carub.0007s1968 Capsella rubella HOM05D006296 ORTHO05D007777 6.9e-53 210.7 137 72.3
BcaNung02241 Brassica carinata HOM05D006296 ORTHO05D007777 2.6e-52 208.8 131 71.0
THA.LOC104812881 Tarenaya hassleriana HOM05D006296 ORTHO05D007777 2.9e-51 205.3 139 70.5
Dinv07546 Davidia involucrata HOM05D006296 ORTHO05D007777 1.4e-50 203.0 140 62.1
Hma1.2p1_0126F.1_g059310 Hydrangea macrophylla HOM05D006296 ORTHO05D007777 3.2e-50 201.8 144 70.1
Aa31LG6G3700 Aethionema arabicum HOM05D006296 ORTHO05D007777 9.4e-50 200.3 157 66.9
CSS0006104 Camellia sinensis var. sinensis HOM05D006296 ORTHO05D007777 6.1e-49 197.6 106 74.5
Nitab4.5_0013250g0030 Nicotiana tabacum HOM05D006296 ORTHO05D007777 6.1e-49 197.6 132 59.8
Lsat_1_v5_gn_1_126121 Lactuca sativa HOM05D006296 ORTHO05D007777 7.9e-49 197.2 137 70.8
Cc02_g13190 Coffea canephora HOM05D006296 ORTHO05D007777 1.4e-48 196.4 126 65.1
Nitab4.5_0003942g0060 Nicotiana tabacum HOM05D006296 ORTHO05D007777 1.4e-48 196.4 132 59.1
TWI38G1090 Tripterygium wilfordii HOM05D006296 ORTHO05D007777 1.4e-48 196.4 144 62.5
EL10Ac8g20365 Beta vulgaris HOM05D006296 ORTHO05D007777 1.8e-48 196.1 136 61.8
Manes.16G026200 Manihot esculenta HOM05D006296 ORTHO05D007777 1.8e-48 196.1 143 58.0
HanXRQChr01g0003901 Helianthus annuus HOM05D006296 ORTHO05D007777 2.3e-48 195.7 148 58.8
Aqoxy1G02520 Aquilegia oxysepala HOM05D006296 ORTHO05D007777 5.1e-48 194.5 130 63.1
Glyma.13G180700 Glycine max HOM05D006296 ORTHO05D007777 5.1e-48 194.5 141 63.1
CsaV3_6G050070 Cucumis sativus L. HOM05D006296 ORTHO05D007777 8.8e-48 193.7 139 59.0
CiPaw.10G047400 Carya illinoinensis HOM05D006296 ORTHO05D007777 1.1e-47 193.4 106 71.7
ECA247G1807 Erigeron canadensis HOM05D006296 ORTHO05D007777 1.1e-47 193.4 136 64.0
Solyc10g009040.4 Solanum lycopersicum HOM05D006296 ORTHO05D007777 2.6e-47 192.2 106 67.9
Sopen10g004820 Solanum pennellii HOM05D006296 ORTHO05D007777 2.6e-47 192.2 106 67.9
MELO3C007289.2 Cucumis melo HOM05D006296 ORTHO05D007777 3.3e-47 191.8 139 58.3
Duzib235G1545 Durio zibethinus HOM05D006296 ORTHO05D007777 3.3e-47 191.8 139 62.6
Psat7g112640 Pisum sativum HOM05D006296 ORTHO05D007777 3.3e-47 191.8 138 59.4
Lalb_Chr16g0383701 Lupinus albus HOM05D006296 ORTHO05D007777 5.7e-47 191.0 139 64.7
Ca_18536_v3 Cicer arietinum L. HOM05D006296 ORTHO05D007777 9.7e-47 190.3 104 71.2
arahy.Tifrunner.gnm1.ann1.6I4RI9 Arachis hypogaea HOM05D006296 ORTHO05D007777 1.3e-46 189.9 137 67.9
Gohir.A06G126500 Gossypium hirsutum HOM05D006296 ORTHO05D007777 1.7e-46 189.5 140 60.0
Gohir.D06G131300 Gossypium hirsutum HOM05D006296 ORTHO05D007777 1.7e-46 189.5 140 60.0
Gorai.010G153200 Gossypium raimondii HOM05D006296 ORTHO05D007777 1.7e-46 189.5 140 60.0
Duzib160G0870 Durio zibethinus HOM05D006296 ORTHO05D007777 2.2e-46 189.1 139 58.3
TPR.G12044 Trifolium pratense HOM05D006296 ORTHO05D007777 2.2e-46 189.1 106 68.9
Cfa000430 Carpinus fangiana HOM05D006296 ORTHO05D007777 3.7e-46 188.3 136 67.6
QL05p039836 Quercus lobata HOM05D006296 ORTHO05D007777 3.7e-46 188.3 138 58.0
Sc05g0007770 Simmondsia chinensis HOM05D006296 ORTHO05D007777 6.3e-46 187.6 137 59.9
Lj6g0008813 Lotus japonicus HOM05D006296 ORTHO05D007777 8.2e-46 187.2 106 67.9
SGA_v2.0_scaffold49G18290 Striga asiatica HOM05D006296 ORTHO05D007777 1.1e-45 186.8 131 58.8
Glyma.07G195600 Glycine max HOM05D006296 ORTHO05D007777 1.4e-45 186.4 139 64.7
SEGI_22799 Sequoiadendron giganteum HOM05D006296 ORTHO05D007777 1.4e-45 186.4 130 61.5
Nn1g04048 Nelumbo nucifera HOM05D006296 ORTHO05D007777 1.8e-45 186.0 137 59.1
Potri.004G041700 Populus trichocarpa HOM05D006296 ORTHO05D007777 1.8e-45 186.0 142 59.2
Thecc.06G189800 Theobroma cacao HOM05D006296 ORTHO05D007777 1.8e-45 186.0 139 57.6
VMungo0251G3500 Vigna mungo HOM05D006296 ORTHO05D007777 2.4e-45 185.7 139 57.6
PSO675G2929 Papaver somniferum HOM05D006296 ORTHO05D007777 4.1e-45 184.9 129 61.2
Medtr4g088930 Medicago truncatula HOM05D006296 ORTHO05D007777 1.2e-44 183.3 147 54.4
Phvul.006G187000 Phaseolus vulgaris HOM05D006296 ORTHO05D007777 1.2e-44 183.3 136 59.6
Hund21232 Selenicereus undatus HOM05D006296 ORTHO05D007777 1.5e-44 183.0 138 60.1
Eucgr.D00634 Eucalyptus grandis HOM05D006296 ORTHO05D007777 2.6e-44 182.2 137 62.8
Nitab4.5_0002158g0020 Nicotiana tabacum HOM05D006296 ORTHO05D007777 1.3e-43 179.9 106 66.0
MD10G1295500 Malus domestica HOM05D006296 ORTHO05D007777 3.8e-43 178.3 129 58.1
RcHm_v2.0_Chr5g0008131 Rosa chinensis HOM05D006296 ORTHO05D007777 5.0e-43 177.9 136 56.6
Prupe.4G044900 Prunus persica HOM05D006296 ORTHO05D007777 6.5e-43 177.6 140 62.1
Rhsim13G0176800 Rhododendron simsii HOM05D006296 ORTHO05D007777 1.1e-42 176.8 114 66.7
MD05G1314200 Malus domestica HOM05D006296 ORTHO05D007777 2.5e-42 175.6 132 56.8
Migut.M01153 Erythranthe guttata HOM05D006296 ORTHO05D007777 4.2e-42 174.9 143 53.1
Os04g0680300 Oryza sativa ssp. japonica HOM05D006296 ORTHO05D007777 4.2e-42 174.9 106 65.1
FAN21G3093 Fragaria x ananassa HOM05D006296 ORTHO05D007777 5.5e-42 174.5 136 55.1
Solyc02g078430.3 Solanum lycopersicum HOM05D006296 ORTHO05D007777 5.5e-42 174.5 106 65.1
Sopen02g023280 Solanum pennellii HOM05D006296 ORTHO05D007777 7.2e-42 174.1 106 65.1
MSTRG.15892 Avicennia marina HOM05D006296 ORTHO05D007777 9.4e-42 173.7 131 53.4
FvH4_3g09420 Fragaria vesca HOM05D006296 ORTHO05D007777 2.1e-41 172.6 136 54.4
DCAR_018474 Daucus carota HOM05D006296 ORTHO05D007777 2.7e-41 172.2 102 70.6
Peaxi162Scf00530g00219 Petunia axillaris HOM05D006296 ORTHO05D007777 4.7e-41 171.4 182 46.2
CiPaw.09G058300 Carya illinoinensis HOM05D006296 ORTHO05D007777 6.1e-41 171.0 136 57.4
CANSAT35G0041 Cannabis sativa HOM05D006296 ORTHO05D007777 1.8e-40 169.5 136 56.6
SalBow7G3743 Salvia bowleyana HOM05D006296 ORTHO05D007777 1.8e-40 169.5 164 47.6
Atru.chr10.1908 Acer truncatum HOM05D006296 ORTHO05D007777 5.2e-40 167.9 139 54.7
FAN08G1739 Fragaria x ananassa HOM05D006296 ORTHO05D007777 8.8e-40 167.2 132 53.8
Zm00001eb065930 Zea mays HOM05D006296 ORTHO05D007777 1.1e-39 166.8 134 59.7
FAN11G0154 Fragaria x ananassa HOM05D006296 ORTHO05D007777 2.6e-39 165.6 144 51.4
Nn1g06589 Nelumbo nucifera HOM05D006296 ORTHO05D007777 7.4e-39 164.1 91 70.3
unitig_22.g6746 Utricularia gibba HOM05D006296 ORTHO05D007777 1.3e-38 163.3 105 57.1
HPP92_014805 Vanilla planifolia HOM05D006296 ORTHO05D007777 2.8e-38 162.2 107 61.7
Nitab4.5_0005954g0020 Nicotiana tabacum HOM05D006296 ORTHO05D007777 1.1e-37 160.2 106 62.3
VMungo0540G1954 Vigna mungo HOM05D006296 ORTHO05D007777 2.4e-37 159.1 146 48.6
PSO541G0808 Papaver somniferum HOM05D006296 ORTHO05D007777 3.1e-37 158.7 170 45.9
CAN.G1164.13 Capsicum annuum HOM05D006296 ORTHO05D007777 5.3e-37 157.9 121 53.7
FAN18G2724 Fragaria x ananassa HOM05D006296 ORTHO05D007777 7.0e-37 157.5 148 48.0
Migut.H01493 Erythranthe guttata HOM05D006296 ORTHO05D007777 1.3e-35 153.3 104 53.8
Phvul.002G228000 Phaseolus vulgaris HOM05D006296 ORTHO05D007777 2.9e-35 152.1 140 50.0
PGR004G1731 Punica granatum HOM05D006296 ORTHO05D007777 2.9e-35 152.1 139 52.5
Ciclev10017521m.g Citrus clementina HOM05D006296 ORTHO05D007777 7.2e-34 147.5 78 74.4
Peaxi162Scf00736g00313 Petunia axillaris HOM05D006296 ORTHO05D007777 9.4e-34 147.1 128 51.6
Oeu005074.1 Olea europaea HOM05D006296 ORTHO05D007777 1.2e-33 146.7 105 62.9
Sed0007841 Sechium edule HOM05D006296 ORTHO05D007777 3.6e-33 145.2 123 52.0
arahy.Tifrunner.gnm1.ann1.F25ZWM Arachis hypogaea HOM05D006296 ORTHO05D007777 1.7e-30 136.3 78 65.4
Actinidia25618 Actinidia chinensis HOM05D006296 ORTHO05D007777 4.8e-30 134.8 90 63.3
Lj2A287T56 Lonicera japonica HOM05D006296 ORTHO05D007777 4.8e-30 134.8 80 66.2
ATR0680G190 Amborella trichopoda HOM05D006296 ORTHO05D007777 3.1e-29 132.1 115 54.8
Sabra11G0035100 Salix brachista HOM05D006296 ORTHO05D007777 7.0e-29 131.0 149 46.3
GSVIVG01002932001 Vitis vinifera HOM05D006296 ORTHO05D007777 3.5e-28 128.6 80 65.0
ClCG00G005210 Citrullus lanatus HOM05D006296 ORTHO05D007777 7.5e-23 110.9 93 53.8
ClCG01G022900 Citrullus lanatus HOM05D006296 ORTHO05D007777 7.5e-23 110.9 93 53.8
Sabra04G0025800 Salix brachista HOM05D006296 ORTHO05D007777 1.4e-21 106.7 96 54.2
Actinidia07582 Actinidia chinensis HOM05D006296 ORTHO05D007777 1.8e-21 106.3 64 67.2
AUR62014802 Chenopodium quinoa HOM05D006296 ORTHO05D007777 4.1e-21 105.1 93 54.8
AUR62016993 Chenopodium quinoa HOM05D006296 ORTHO05D007777 4.1e-21 105.1 93 54.8
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 7.0e-21 104.4 62 69.4
AagrBONN_evm.TU.Sc2ySwM_362.1174 Anthoceros agrestis HOM05D006296 ORTHO05D007777 1.6e-20 103.2 93 47.3
FvH4_5g20990 Fragaria vesca HOM05D006296 ORTHO05D007777 3.8e-19 98.6 100 47.0
CDE04G3708 Ceratophyllum demersum HOM05D006296 ORTHO05D007777 3.3e-18 95.5 97 48.5
Sed0020533 Sechium edule HOM05D006296 ORTHO05D007777 6.1e-17 91.3 93 45.2
PGSC0003DMG400022442 Solanum tuberosum HOM05D006296 ORTHO05D007777 6.8e-16 87.8 56 66.1
C07p51340 Brassica napus HOM05D006296 ORTHO05D007777 1.0e-11 73.9 62 72.6
BolC7t45633H Brassica oleracea HOM05D006296 ORTHO05D007777 2.9e-11 72.4 61 72.1
Haze_06487 Corylus avellana HOM05D006296 ORTHO05D007777 6.8e-08 61.2 35 68.6


User provided reference genes

Program Settings