Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 1.7e-69 266.2 164 100.0
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 7.5e-65 250.8 164 83.5
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 9.7e-65 250.4 164 93.3
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 1.7e-64 249.6 164 91.5
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 2.8e-64 248.8 164 82.3
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 1.1e-60 236.9 164 91.5
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 1.1e-60 236.9 164 91.5
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 2.7e-59 232.3 164 89.6
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 4.0e-58 228.4 166 77.1
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 2.0e-57 226.1 157 91.7
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 2.0e-57 226.1 156 92.3
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 1.3e-56 223.4 194 67.5
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.2e-49 200.3 157 69.4
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 3.1e-47 192.2 106 96.2
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 1.7e-45 186.4 158 63.3
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 1.5e-44 183.3 158 61.4
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 1.9e-44 183.0 157 60.5
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.3e-44 182.2 158 60.8
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.3e-44 182.2 158 60.8
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 3.3e-44 182.2 158 60.8
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 9.5e-44 180.6 153 60.8
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 1.6e-43 179.9 153 60.1
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 2.3e-42 176.0 153 60.1
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 3.0e-42 175.6 153 60.8
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 3.0e-42 175.6 158 60.1
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 4.0e-42 175.3 158 60.1
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 6.8e-42 174.5 153 59.5
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 4.4e-41 171.8 155 58.7
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 1.7e-40 169.9 155 59.4
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.7e-40 169.9 156 65.4
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 2.9e-40 169.1 155 58.1
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 2.9e-40 169.1 155 58.7
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 4.9e-40 168.3 153 58.2
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 4.9e-40 168.3 151 58.9
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 4.9e-40 168.3 155 58.1
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 6.4e-40 167.9 155 58.1
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 8.3e-40 167.5 155 57.4
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 8.3e-40 167.5 153 55.6
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.1e-39 167.2 155 57.4
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 1.1e-39 167.2 155 57.4
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 3.2e-39 165.6 153 58.8
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 4.1e-39 165.2 154 57.1
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 5.4e-39 164.9 153 58.8
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 5.4e-39 164.9 153 56.2
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 9.2e-39 164.1 153 56.2
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 1.2e-38 163.7 153 58.2
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.2e-38 163.7 153 56.2
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 1.6e-38 163.3 152 58.6
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 2.7e-38 162.5 152 64.5
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 3.5e-38 162.2 153 56.2
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 4.6e-38 161.8 153 56.2
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 4.6e-38 161.8 152 57.9
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 6.0e-38 161.4 153 57.5
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 6.0e-38 161.4 153 55.6
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 7.8e-38 161.0 154 55.8
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.0e-37 160.6 152 55.9
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 1.3e-37 160.2 153 55.6
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 1.7e-37 159.8 151 57.6
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 1.7e-37 159.8 153 56.9
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 1.7e-37 159.8 153 55.6
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 3.9e-37 158.7 153 58.2
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 5.0e-37 158.3 153 57.5
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 5.0e-37 158.3 145 60.7
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 5.0e-37 158.3 153 56.2
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 6.6e-37 157.9 153 58.8
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 6.6e-37 157.9 154 56.5
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 8.6e-37 157.5 150 57.3
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 8.6e-37 157.5 155 56.8
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 1.1e-36 157.1 105 77.1
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.5e-36 156.8 157 54.8
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.5e-36 156.8 152 58.6
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.5e-36 156.8 152 58.6
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 1.5e-36 156.8 156 55.1
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 1.9e-36 156.4 145 58.6
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.9e-36 156.4 153 56.9
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 1.9e-36 156.4 153 56.9
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.5e-36 156.0 152 57.9
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 4.3e-36 155.2 143 58.0
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 5.6e-36 154.8 148 56.8
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 7.3e-36 154.5 153 54.2
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 7.3e-36 154.5 150 59.3
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 7.3e-36 154.5 148 56.8
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 9.5e-36 154.1 153 58.2
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 2.1e-35 152.9 151 58.9
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 2.1e-35 152.9 151 56.3
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 2.1e-35 152.9 151 55.6
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 2.1e-35 152.9 151 55.6
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 2.1e-35 152.9 151 55.6
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.8e-35 152.5 152 54.6
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 2.8e-35 152.5 151 57.0
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.6e-35 152.1 151 55.6
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.6e-35 152.1 151 55.6
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 3.6e-35 152.1 151 55.0
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 8.0e-35 151.0 153 57.5
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 1.8e-34 149.8 154 53.2
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 1.8e-34 149.8 153 56.9
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 2.3e-34 149.4 153 55.6
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 2.3e-34 149.4 153 55.6
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 8.9e-34 147.5 152 57.2
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 8.9e-34 147.5 153 57.5
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.2e-33 147.1 151 55.0
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 2.0e-33 146.4 149 57.0
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 4.4e-33 145.2 153 55.6
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 9.8e-33 144.1 141 57.4
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.3e-32 143.7 168 50.6
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 1.7e-32 143.3 150 56.0
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 6.4e-32 141.4 145 52.4
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 6.4e-32 141.4 145 52.4
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 1.1e-31 140.6 153 51.6
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 1.1e-31 140.6 103 69.9
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 2.4e-31 139.4 153 56.9
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 2.4e-31 139.4 153 55.6
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 3.2e-31 139.0 92 77.2
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 7.0e-31 137.9 153 55.6
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 1.2e-30 137.1 153 54.9
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 2.1e-30 136.3 99 69.7
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 2.1e-30 136.3 98 73.5
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.5e-30 135.6 154 51.9
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 3.5e-30 135.6 98 70.4
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 6.0e-30 134.8 154 50.0
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 6.0e-30 134.8 158 50.0
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 7.8e-30 134.4 104 71.2
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 7.8e-30 134.4 153 50.3
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 1.0e-29 134.0 218 39.0
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 2.3e-29 132.9 153 54.9
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 3.0e-29 132.5 153 54.9
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.1e-28 130.6 99 70.7
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 1.9e-28 129.8 197 44.7
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 4.3e-28 128.6 162 50.0
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 4.3e-28 128.6 157 48.4
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 5.6e-28 128.3 92 83.7
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 7.3e-28 127.9 139 53.2
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 9.5e-28 127.5 122 63.9
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 1.6e-27 126.7 93 69.9
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 2.1e-27 126.3 153 51.0
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 2.1e-27 126.3 154 47.4
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 4.7e-27 125.2 153 49.0
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 6.2e-27 124.8 139 51.8
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 8.1e-27 124.4 126 52.4
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 8.1e-27 124.4 142 52.1
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 8.1e-27 124.4 90 72.2
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.1e-26 124.0 89 73.0
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.4e-26 123.6 124 55.6
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.8e-26 123.2 91 69.2
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 2.3e-26 122.9 89 69.7
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 5.2e-26 121.7 89 71.9
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 5.2e-26 121.7 92 77.2
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.2e-25 120.6 142 49.3
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.5e-25 120.2 95 66.3
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 9.9e-25 117.5 173 43.4
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 1.7e-24 116.7 151 45.0
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 1.7e-24 116.7 151 47.0
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.7e-24 116.7 153 46.4
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 2.2e-24 116.3 91 63.7
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 8.3e-24 114.4 151 45.7
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.4e-23 113.6 153 46.4
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 4.1e-23 112.1 166 44.0
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 3.5e-22 109.0 180 40.6
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 6.6e-21 104.8 116 51.7
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 2.5e-20 102.8 151 43.0
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 3.6e-19 99.0 155 42.6
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 2.4e-18 96.3 147 42.2
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 2.0e-17 93.2 265 30.2
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 2.0e-17 93.2 166 39.8
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 1.3e-16 90.5 77 57.1
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 9.2e-15 84.3 91 51.6
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 1.3e-13 80.5 83 47.0
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 5.1e-13 78.6 99 50.5
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.6e-13 78.2 69 59.4
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 2.5e-12 76.3 86 52.3
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 9.6e-12 74.3 66 57.6
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.8e-10 70.1 65 56.9
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 1.7e-08 63.5 88 42.0
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 5.4e-07 58.5 87 42.5
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 3.5e-06 55.8 73 49.3
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 7.8e-06 54.7 45 57.8


User provided reference genes

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