Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR216400 Cardamine hirsuta HOM05D002484 ORTHO05D002541 5.4e-31 137.1 74 100.0
BcaC03g15629 Brassica carinata HOM05D002484 ORTHO05D002541 6.6e-21 103.6 83 68.7
C02p33630 Brassica napus HOM05D002484 ORTHO05D002541 6.6e-21 103.6 83 68.7
BolC2t09341H Brassica oleracea HOM05D002484 ORTHO05D002541 6.6e-21 103.6 83 68.7
Thhalv10019399m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.1e-20 102.8 83 67.5
BcaB05g24952 Brassica carinata HOM05D002484 ORTHO05D002541 1.9e-20 102.1 83 67.5
A07p41370 Brassica napus HOM05D002484 ORTHO05D002541 3.3e-20 101.3 83 65.1
BraA07t31670Z Brassica rapa HOM05D002484 ORTHO05D002541 3.3e-20 101.3 83 65.1
CARHR216420 Cardamine hirsuta HOM05D002484 ORTHO05D002541 3.3e-20 101.3 83 66.3
Sp5g30970 Schrenkiella parvula HOM05D002484 ORTHO05D002541 3.3e-20 101.3 83 67.5
BcaB02g07045 Brassica carinata HOM05D002484 ORTHO05D002541 4.3e-20 100.9 83 66.3
C06p49790 Brassica napus HOM05D002484 ORTHO05D002541 4.3e-20 100.9 83 66.3
BcaC08g47321 Brassica carinata HOM05D002484 ORTHO05D002541 7.3e-20 100.1 83 65.1
A02p20270 Brassica napus HOM05D002484 ORTHO05D002541 1.3e-19 99.4 83 66.3
BraA02t07061Z Brassica rapa HOM05D002484 ORTHO05D002541 1.3e-19 99.4 83 66.3
Carub.0007s3201 Capsella rubella HOM05D002484 ORTHO05D002541 1.3e-19 99.4 83 66.3
Thhalv10019396m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.3e-19 99.4 83 66.3
A07p28700 Brassica napus HOM05D002484 ORTHO05D002541 1.6e-19 99.0 83 66.3
BraA07t30510Z Brassica rapa HOM05D002484 ORTHO05D002541 1.6e-19 99.0 83 66.3
Sp5g30950 Schrenkiella parvula HOM05D002484 ORTHO05D002541 2.1e-19 98.6 83 63.9
C06p32330 Brassica napus HOM05D002484 ORTHO05D002541 2.8e-19 98.2 83 66.3
Carub.0002s2268 Capsella rubella HOM05D002484 ORTHO05D002541 2.8e-19 98.2 83 63.9
Carub.0002s2269 Capsella rubella HOM05D002484 ORTHO05D002541 2.8e-19 98.2 83 63.9
Carub.0002s2270 Capsella rubella HOM05D002484 ORTHO05D002541 3.6e-19 97.8 83 63.9
CARHR284300 Cardamine hirsuta HOM05D002484 ORTHO05D002541 3.6e-19 97.8 83 62.7
Thhalv10019397m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 4.8e-19 97.4 83 62.7
BcaB02g07044 Brassica carinata HOM05D002484 ORTHO05D002541 6.2e-19 97.1 83 63.9
A07p41390 Brassica napus HOM05D002484 ORTHO05D002541 6.2e-19 97.1 83 63.9
BraA07t31672Z Brassica rapa HOM05D002484 ORTHO05D002541 6.2e-19 97.1 83 63.9
Carub.0002s2271 Capsella rubella HOM05D002484 ORTHO05D002541 6.2e-19 97.1 83 63.9
Carub.0002s2274 Capsella rubella HOM05D002484 ORTHO05D002541 6.2e-19 97.1 83 61.4
BcaC08g47074 Brassica carinata HOM05D002484 ORTHO05D002541 8.1e-19 96.7 83 59.0
AT5G44420 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 1.1e-18 96.3 83 61.4
CARHR069310 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.1e-18 96.3 83 61.4
Carub.0002s2273 Capsella rubella HOM05D002484 ORTHO05D002541 1.4e-18 95.9 83 62.7
CARHR069370 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.8e-18 95.5 83 61.4
AT2G26020 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 2.4e-18 95.1 83 60.2
CARHR069280 Cardamine hirsuta HOM05D002484 ORTHO05D002541 2.4e-18 95.1 83 61.4
AT2G26010 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 3.1e-18 94.7 83 61.4
Thhalv10019398m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 3.1e-18 94.7 83 61.4
AL2G35840 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 4.0e-18 94.4 83 61.4
AT5G44430 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 4.0e-18 94.4 83 61.4
Thhalv10019395m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 6.9e-18 93.6 83 60.2
A07p41360 Brassica napus HOM05D002484 ORTHO05D002541 9.0e-18 93.2 83 59.0
BraA07t31669Z Brassica rapa HOM05D002484 ORTHO05D002541 9.0e-18 93.2 83 59.0
BolC6t38355H Brassica oleracea HOM05D002484 ORTHO05D002541 1.2e-17 92.8 83 61.4
Carub.0002s2272 Capsella rubella HOM05D002484 ORTHO05D002541 1.2e-17 92.8 83 61.4
BcaC08g45552 Brassica carinata HOM05D002484 ORTHO05D002541 1.5e-17 92.4 83 60.2
C06p32340 Brassica napus HOM05D002484 ORTHO05D002541 1.5e-17 92.4 83 60.2
AT1G75830 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 2.0e-17 92.0 83 60.2
C06p32380 Brassica napus HOM05D002484 ORTHO05D002541 2.6e-17 91.7 83 60.2
BcaC08g45554 Brassica carinata HOM05D002484 ORTHO05D002541 5.8e-17 90.5 83 59.0
BcaC08g45556 Brassica carinata HOM05D002484 ORTHO05D002541 5.8e-17 90.5 83 59.0
CARHR069270 Cardamine hirsuta HOM05D002484 ORTHO05D002541 5.8e-17 90.5 83 57.8
AL7G45400 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 1.7e-16 89.0 83 63.9
A02p20260 Brassica napus HOM05D002484 ORTHO05D002541 3.8e-16 87.8 83 57.8
C02p33640 Brassica napus HOM05D002484 ORTHO05D002541 3.8e-16 87.8 83 57.8
BolC2t09340H Brassica oleracea HOM05D002484 ORTHO05D002541 3.8e-16 87.8 83 57.8
BraA02t07060Z Brassica rapa HOM05D002484 ORTHO05D002541 3.8e-16 87.8 83 57.8
BcaC08g45551 Brassica carinata HOM05D002484 ORTHO05D002541 8.4e-16 86.7 83 60.2
Thhalv10019394m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 8.4e-16 86.7 83 55.4
Thhalv10000662m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.4e-15 85.9 83 59.0
A02p20250 Brassica napus HOM05D002484 ORTHO05D002541 1.9e-15 85.5 83 56.6
C02p33650 Brassica napus HOM05D002484 ORTHO05D002541 1.9e-15 85.5 83 56.6
BolC2t09339H Brassica oleracea HOM05D002484 ORTHO05D002541 1.9e-15 85.5 83 56.6
BraA02t07059Z Brassica rapa HOM05D002484 ORTHO05D002541 1.9e-15 85.5 83 56.6
CARHR069320 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.9e-15 85.5 82 52.4
Aqoxy5G01512 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 4.2e-15 84.3 83 54.2
Carub.0002s1189 Capsella rubella HOM05D002484 ORTHO05D002541 5.4e-15 84.0 84 53.6
Aqoxy4G00457 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 2.1e-14 82.0 83 54.2
AL1G66200 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 2.7e-14 81.6 84 57.1
BcaB05g24945 Brassica carinata HOM05D002484 ORTHO05D002541 4.6e-14 80.9 83 54.2
BcaB05g24946 Brassica carinata HOM05D002484 ORTHO05D002541 4.6e-14 80.9 83 54.2
CARHR069290 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.0e-13 79.7 83 56.6
CARHR069250 Cardamine hirsuta HOM05D002484 ORTHO05D002541 3.0e-13 78.2 84 57.1
BcaC03g15628 Brassica carinata HOM05D002484 ORTHO05D002541 5.1e-13 77.4 95 49.5
CARHR069380 Cardamine hirsuta HOM05D002484 ORTHO05D002541 5.1e-13 77.4 79 55.7
AL2G35830 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 1.5e-12 75.9 67 56.7
Thhalv10000535m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.1e-10 69.7 74 54.1
Aqoxy4G00455 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 1.5e-09 65.9 60 56.7
CARHR069260 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.5e-09 65.9 74 50.0
C04p06240 Brassica napus HOM05D002484 ORTHO05D002541 2.0e-09 65.5 83 45.8
A07p41400 Brassica napus HOM05D002484 ORTHO05D002541 2.6e-09 65.1 78 51.3
BcaC02g12226 Brassica carinata HOM05D002484 ORTHO05D002541 3.4e-09 64.7 83 45.8
A05p05280 Brassica napus HOM05D002484 ORTHO05D002541 3.4e-09 64.7 82 43.9
C02p33860 Brassica napus HOM05D002484 ORTHO05D002541 4.5e-09 64.3 84 50.0
A06p39910 Brassica napus HOM05D002484 ORTHO05D002541 5.8e-09 63.9 83 43.4
BolC2t09321H Brassica oleracea HOM05D002484 ORTHO05D002541 7.6e-09 63.5 84 47.6
BraA06t26906Z Brassica rapa HOM05D002484 ORTHO05D002541 7.6e-09 63.5 83 42.2
A05p05350 Brassica napus HOM05D002484 ORTHO05D002541 1.3e-08 62.8 83 43.4
BraA05t19505Z Brassica rapa HOM05D002484 ORTHO05D002541 1.3e-08 62.8 83 43.4
C04p06270 Brassica napus HOM05D002484 ORTHO05D002541 2.2e-08 62.0 83 43.4
BcaC02g12225 Brassica carinata HOM05D002484 ORTHO05D002541 3.8e-08 61.2 83 43.4
C04p06250 Brassica napus HOM05D002484 ORTHO05D002541 3.8e-08 61.2 83 43.4
BcaC02g12223 Brassica carinata HOM05D002484 ORTHO05D002541 4.9e-08 60.8 83 43.4
BcaC03g15604 Brassica carinata HOM05D002484 ORTHO05D002541 8.4e-08 60.1 87 46.0
A05p05270 Brassica napus HOM05D002484 ORTHO05D002541 8.4e-08 60.1 83 42.2
BraA07t31673Z Brassica rapa HOM05D002484 ORTHO05D002541 1.1e-07 59.7 41 80.5
BolC4t22248H Brassica oleracea HOM05D002484 ORTHO05D002541 2.5e-07 58.5 83 42.2
BcaC08g47076 Brassica carinata HOM05D002484 ORTHO05D002541 4.2e-07 57.8 43 74.4
BcaB02g08940 Brassica carinata HOM05D002484 ORTHO05D002541 5.5e-07 57.4 83 44.6
BcaB02g08968 Brassica carinata HOM05D002484 ORTHO05D002541 5.5e-07 57.4 83 44.6
COL.COLO4_25963 Corchorus olitorius HOM05D002484 ORTHO05D002541 1.2e-06 56.2 83 39.8
AL8G15430 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 2.7e-06 55.1 40 75.0
BcaB02g08967 Brassica carinata HOM05D002484 ORTHO05D002541 2.7e-06 55.1 83 43.4
BcaB05g24949 Brassica carinata HOM05D002484 ORTHO05D002541 2.7e-06 55.1 85 44.7
BcaB02g08969 Brassica carinata HOM05D002484 ORTHO05D002541 7.9e-06 53.5 83 42.2


User provided reference genes

Program Settings