Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR214850 Cardamine hirsuta HOM05D000390 ORTHO05D001192 1.8e-34 148.7 72 100.0
AL7G53100 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 5.7e-25 117.1 72 73.6
Thhalv10027852m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 9.6e-25 116.3 73 80.8
Carub.0007s3313 Capsella rubella HOM05D000390 ORTHO05D001192 1.6e-24 115.5 70 77.1
AL7G46850 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 2.8e-24 114.8 70 71.4
Carub.0007s3310 Capsella rubella HOM05D000390 ORTHO05D001192 3.7e-24 114.4 71 70.4
AL7G46860 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 4.8e-24 114.0 72 76.4
A04p15330 Brassica napus HOM05D000390 ORTHO05D001192 6.2e-24 113.6 66 78.8
BraA04t17174Z Brassica rapa HOM05D000390 ORTHO05D001192 6.2e-24 113.6 66 78.8
Carub.0007s3308 Capsella rubella HOM05D000390 ORTHO05D001192 1.8e-23 112.1 72 72.2
AL7G46830 Arabidopsis lyrata HOM05D001876 ORTHO05D001192 2.4e-23 111.7 72 75.0
AT5G37890 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 2.4e-23 111.7 72 69.4
Carub.0007s3309 Capsella rubella HOM05D000390 ORTHO05D001192 2.4e-23 111.7 72 72.2
Carub.0007s3314 Capsella rubella HOM05D000390 ORTHO05D001192 9.0e-23 109.8 72 76.4
C04p49560 Brassica napus HOM05D000390 ORTHO05D001192 1.2e-22 109.4 66 75.8
BolC4t26543H Brassica oleracea HOM05D000390 ORTHO05D001192 1.2e-22 109.4 66 75.8
BcaC02g08878 Brassica carinata HOM05D000390 ORTHO05D001192 1.5e-22 109.0 66 75.8
Sp7g05350 Schrenkiella parvula HOM05D000390 ORTHO05D001192 1.5e-22 109.0 68 72.1
Thhalv10027865m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 7.6e-22 106.7 74 75.7
AT5G37910 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 5.0e-21 104.0 73 68.5
Carub.0002s1187 Capsella rubella HOM05D000390 ORTHO05D001192 5.0e-21 104.0 70 70.0
CARHR214830 Cardamine hirsuta HOM05D000390 ORTHO05D001192 1.4e-20 102.4 67 70.1
BcaC02g09622 Brassica carinata HOM05D000390 ORTHO05D001192 1.9e-20 102.1 71 64.8
C04p44810 Brassica napus HOM05D000390 ORTHO05D001192 1.9e-20 102.1 71 64.8
BolC4t26058H Brassica oleracea HOM05D000390 ORTHO05D001192 1.9e-20 102.1 71 64.8
AL8G39760 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 9.3e-20 99.8 72 65.3
BcaC01g05066 Brassica carinata HOM05D000390 ORTHO05D001192 1.6e-19 99.0 72 65.3
CARHR276580 Cardamine hirsuta HOM05D000390 ORTHO05D001192 4.6e-19 97.4 72 61.1
Thhalv10028216m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 6.1e-19 97.1 70 68.6
AT5G62800 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 7.9e-19 96.7 70 62.9
BcaB06g27154 Brassica carinata HOM05D000390 ORTHO05D001192 1.8e-18 95.5 68 63.2
AT5G37900 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 3.0e-18 94.7 65 66.2
AL7G53060 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 6.7e-18 93.6 74 66.2
A04p11090 Brassica napus HOM05D000390 ORTHO05D001192 6.7e-18 93.6 71 62.0
Thhalv10027866m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 6.7e-18 93.6 69 72.5
BcaB01g03215 Brassica carinata HOM05D000390 ORTHO05D001192 1.1e-17 92.8 71 60.6
AL7G46840 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 1.5e-17 92.4 73 61.6
CARHR214860 Cardamine hirsuta HOM05D000390 ORTHO05D001192 2.5e-17 91.7 68 64.7
AL7G53090 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 3.3e-17 91.3 65 60.0
A03p25660 Brassica napus HOM05D000390 ORTHO05D001192 5.7e-17 90.5 71 62.0
C04p44770 Brassica napus HOM05D000390 ORTHO05D001192 5.7e-17 90.5 73 57.5
Carub.0006s2402 Capsella rubella HOM05D000390 ORTHO05D001192 5.7e-17 90.5 65 64.6
Carub.0006s2403 Capsella rubella HOM05D000390 ORTHO05D001192 5.7e-17 90.5 52 73.1
Thhalv10027864m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 9.7e-17 89.7 69 69.6
BcaC02g09616 Brassica carinata HOM05D000390 ORTHO05D001192 1.6e-16 89.0 73 56.2
BolC4t26051H Brassica oleracea HOM05D000390 ORTHO05D001192 1.6e-16 89.0 73 56.2
BolC6t37130H Brassica oleracea HOM05D000390 ORTHO05D001192 6.3e-16 87.0 69 60.9
Carub.0005s1229 Capsella rubella HOM05D000390 ORTHO05D001192 1.8e-15 85.5 65 55.4
BcaB07g31607 Brassica carinata HOM05D000390 ORTHO05D001192 2.4e-15 85.1 68 61.8
AT5G37870 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 3.1e-15 84.7 71 59.2
Sp7g04150 Schrenkiella parvula HOM05D000390 ORTHO05D001192 5.3e-15 84.0 70 57.1
AL7G46870 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 9.0e-15 83.2 48 81.2
Thhalv10028229m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 2.6e-14 81.6 72 59.7
CARHR214810 Cardamine hirsuta HOM05D000390 ORTHO05D001192 3.4e-14 81.3 64 56.2
AL7G46770 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 4.5e-14 80.9 70 55.7
Carub.0008s2352 Capsella rubella HOM05D000390 ORTHO05D001192 1.0e-13 79.7 71 53.5
Carub.0007s3332 Capsella rubella HOM05D000390 ORTHO05D001192 3.2e-12 74.7 71 53.5
Carub.0002s1269 Capsella rubella HOM05D000390 ORTHO05D001192 1.6e-11 72.4 72 48.6
Thhalv10028270m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 2.1e-11 72.0 71 49.3
Carub.0002s1270 Capsella rubella HOM05D000390 ORTHO05D001192 6.1e-11 70.5 73 46.6
AL2G24580 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 1.4e-10 69.3 73 46.6
BraA07t30974Z Brassica rapa HOM05D000390 ORTHO05D001192 1.4e-10 69.3 73 45.2
CARHR272990 Cardamine hirsuta HOM05D000390 ORTHO05D001192 1.8e-10 68.9 69 50.7
AL2G24590 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 2.3e-10 68.6 75 52.0
BcaB01g04031 Brassica carinata HOM05D000390 ORTHO05D001192 2.3e-10 68.6 72 44.4
AT1G66610 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 3.0e-10 68.2 73 46.6
Carub.0002s1264 Capsella rubella HOM05D000390 ORTHO05D001192 3.0e-10 68.2 73 45.2
Carub.0002s1267 Capsella rubella HOM05D000390 ORTHO05D001192 3.0e-10 68.2 77 49.4
Carub.0002s1266 Capsella rubella HOM05D000390 ORTHO05D001192 3.9e-10 67.8 76 46.1
BcaB02g07930 Brassica carinata HOM05D000390 ORTHO05D001192 5.1e-10 67.4 68 51.5
C06p39870 Brassica napus HOM05D000390 ORTHO05D001192 5.1e-10 67.4 73 43.8
A07p33480 Brassica napus HOM05D000390 ORTHO05D001192 6.7e-10 67.0 73 43.8
A05p14370 Brassica napus HOM05D000390 ORTHO05D001192 1.1e-09 66.2 78 42.3
BraA05t20365Z Brassica rapa HOM05D000390 ORTHO05D001192 1.1e-09 66.2 78 42.3
BcaC08g44480 Brassica carinata HOM05D000390 ORTHO05D001192 2.0e-09 65.5 68 48.5
AL2G24600 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 3.3e-09 64.7 66 48.5
CARHR058650 Cardamine hirsuta HOM05D000390 ORTHO05D001192 3.3e-09 64.7 73 49.3
AT1G66620 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 7.4e-09 63.5 76 44.7
C06p19350 Brassica napus HOM05D000390 ORTHO05D001192 7.4e-09 63.5 68 48.5
Carub.0007s3357 Capsella rubella HOM05D000390 ORTHO05D001192 7.4e-09 63.5 70 54.3
BcaC08g46046 Brassica carinata HOM05D000390 ORTHO05D001192 1.7e-08 62.4 63 46.0
Carub.0006s2401 Capsella rubella HOM05D000390 ORTHO05D001192 2.2e-08 62.0 71 43.7
BcaC08g46409 Brassica carinata HOM05D000390 ORTHO05D001192 2.8e-08 61.6 72 40.3
Thhalv10018712m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 2.8e-08 61.6 53 50.9
Aa31LG5G22710 Aethionema arabicum HOM05D000390 ORTHO05D001192 3.7e-08 61.2 66 48.5
BcaB03g15261 Brassica carinata HOM05D000390 ORTHO05D001192 3.7e-08 61.2 76 40.8
Thhalv10018806m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 4.8e-08 60.8 71 45.1
Sp7g04100 Schrenkiella parvula HOM05D000390 ORTHO05D001192 6.3e-08 60.5 70 44.3
BcaB03g14737 Brassica carinata HOM05D000390 ORTHO05D001192 1.1e-07 59.7 73 37.0
CARHR154710 Cardamine hirsuta HOM05D000390 ORTHO05D001192 4.1e-07 57.8 72 38.9
Carub.0002s1265 Capsella rubella HOM05D000390 ORTHO05D001192 9.1e-07 56.6 76 39.5
CARHR214800 Cardamine hirsuta HOM05D000390 ORTHO05D001192 1.2e-06 56.2 70 45.7
AL7G53110 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 2.0e-06 55.5 44 61.4
C06p43410 Brassica napus HOM05D000390 ORTHO05D001192 5.9e-06 53.9 71 38.0


User provided reference genes

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