Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 0.0e+00 1154.4 563 100.0
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 0.0e+00 1114.4 563 95.6
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 0.0e+00 1108.6 563 94.7
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 0.0e+00 1108.2 563 95.2
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 0.0e+00 1107.8 563 95.0
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 0.0e+00 1106.7 563 94.8
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 0.0e+00 1105.1 563 94.8
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 0.0e+00 1102.4 563 94.8
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 0.0e+00 1096.3 563 94.3
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 0.0e+00 1086.6 563 92.5
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 0.0e+00 1086.2 571 92.8
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 2.9e-294 1014.6 557 87.8
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 3.5e-287 991.1 560 83.2
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 7.7e-287 989.9 549 84.3
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 1.3e-286 989.2 549 84.2
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 2.9e-286 988.0 550 85.3
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 8.5e-286 986.5 550 84.9
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.1e-285 986.1 550 84.9
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.5e-285 985.7 550 85.1
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 3.2e-285 984.6 549 84.3
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 7.2e-285 983.4 549 84.5
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 2.1e-284 981.9 549 84.0
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 3.6e-284 981.1 549 84.0
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 8.0e-284 979.9 549 84.2
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 1.0e-283 979.5 552 83.2
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 8.8e-283 976.5 549 83.8
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 1.5e-282 975.7 549 83.4
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 4.4e-282 974.2 556 81.7
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 5.7e-282 973.8 551 84.0
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 9.8e-282 973.0 552 83.5
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 1.7e-281 972.2 549 83.4
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 2.8e-281 971.5 549 83.2
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 2.8e-281 971.5 553 84.1
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 8.3e-281 969.9 564 81.4
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 1.1e-280 969.5 549 82.7
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 1.1e-280 969.5 552 82.4
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 1.4e-280 969.1 551 84.4
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 1.4e-280 969.1 568 80.6
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 2.4e-280 968.4 549 82.7
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 1.2e-279 966.1 549 83.1
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 1.6e-279 965.7 549 82.5
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 2.7e-279 964.9 559 81.9
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 2.7e-279 964.9 549 82.5
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 4.5e-279 964.1 549 82.9
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 5.9e-279 963.8 549 82.3
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 5.9e-279 963.8 552 81.9
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 1.3e-278 962.6 549 82.7
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 3.8e-278 961.1 549 82.0
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 3.3e-277 958.0 551 81.7
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 5.5e-277 957.2 553 81.7
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 2.1e-276 955.3 549 81.8
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 4.7e-276 954.1 549 81.8
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 6.1e-276 953.7 564 80.5
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 6.1e-276 953.7 549 80.9
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 6.1e-276 953.7 579 78.4
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 6.1e-276 953.7 546 82.2
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 6.1e-276 953.7 549 82.1
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 8.0e-276 953.4 549 81.4
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 1.4e-275 952.6 549 81.8
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.4e-275 952.6 549 81.6
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 2.3e-275 951.8 551 82.2
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 5.2e-275 950.7 573 79.2
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.2e-274 949.5 549 81.4
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.2e-274 949.5 549 81.6
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 2.0e-274 948.7 547 81.7
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 3.4e-274 948.0 553 80.3
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 9.8e-274 946.4 548 81.8
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 3.7e-273 944.5 552 80.3
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 8.3e-273 943.3 547 82.1
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 3.1e-272 941.4 552 81.0
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 5.4e-272 940.6 552 79.5
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 9.2e-272 939.9 548 80.1
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 1.6e-271 939.1 542 81.2
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 5.9e-271 937.2 549 80.0
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 5.9e-271 937.2 549 80.0
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 7.8e-271 936.8 546 81.0
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 7.8e-271 936.8 555 79.8
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 2.3e-270 935.3 549 79.4
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 9.5e-269 929.9 550 80.0
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 5.2e-267 924.1 546 78.9
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 1.5e-266 922.5 546 79.5
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 2.6e-266 921.8 549 79.1
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.3e-265 919.5 549 78.7
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 2.9e-265 918.3 569 76.1
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 6.4e-265 917.1 549 78.3
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 2.4e-264 915.2 543 80.1
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 1.2e-263 912.9 569 76.4
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 2.7e-263 911.8 541 79.5
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 1.0e-262 909.8 545 78.0
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 1.7e-262 909.1 544 78.9
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 4.3e-261 904.4 549 78.3
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 1.2e-260 902.9 499 85.2
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.3e-259 898.7 554 78.2
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 3.1e-259 898.3 513 83.0
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 2.9e-257 891.7 542 77.3
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 2.3e-251 872.1 543 76.2
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 5.8e-250 867.5 552 76.1
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 6.4e-249 864.0 549 76.1
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 6.0e-247 857.4 549 74.7
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 7.8e-247 857.1 495 79.8
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 7.3e-245 850.5 555 75.0
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 9.5e-245 850.1 545 73.8
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.6e-244 849.4 538 74.7
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.1e-244 849.0 538 74.7
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 3.4e-242 841.6 549 73.8
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 5.8e-242 840.9 559 72.3
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 3.1e-235 818.5 550 70.9
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 1.2e-231 806.6 555 72.3
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 6.2e-228 794.3 544 71.7
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 5.3e-227 791.2 503 76.1
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 1.2e-226 790.0 455 84.0
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 1.6e-223 779.6 549 68.5
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 9.6e-221 770.4 552 69.2
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 3.1e-219 765.4 541 67.7
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 2.0e-218 762.7 539 66.2
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 3.5e-215 751.9 423 84.4
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 5.1e-214 748.0 424 84.0
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 5.5e-208 728.0 536 64.9
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 9.3e-208 727.2 540 64.6
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 9.0e-203 710.7 539 63.5
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.3e-197 692.2 531 64.2
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.3e-197 692.2 531 64.2
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 8.8e-190 667.5 609 59.1
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 7.7e-162 574.7 330 83.3
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 4.7e-159 565.5 334 80.2
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 2.3e-153 546.6 555 55.1
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 4.3e-144 515.8 547 49.5
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 1.1e-142 511.1 292 83.6
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.7e-129 467.2 306 72.5
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 2.1e-127 460.3 309 73.5
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 3.3e-120 436.4 350 64.0
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 8.4e-100 368.6 199 86.9
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 5.5e-91 339.3 200 82.0
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.1e-86 323.2 501 41.3
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.0e-68 265.4 335 44.2
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 7.2e-59 232.6 129 88.4
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 6.1e-58 229.6 137 83.2
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 1.7e-55 221.5 139 74.8
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 2.2e-55 221.1 127 85.8
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 2.2e-55 221.1 127 85.8
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 3.1e-54 217.2 133 78.9
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 1.0e-52 212.2 120 85.8
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 1.0e-52 212.2 120 85.8
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 1.6e-50 204.9 119 84.9
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 1.6e-50 204.9 119 84.9
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 1.8e-46 191.4 109 76.1
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.4e-46 191.0 111 75.7
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 5.4e-46 189.9 114 73.7
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.5e-43 181.0 119 71.4
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 1.8e-38 164.9 95 76.8
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 2.5e-35 154.5 76 90.8
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 1.1e-27 129.0 75 82.7
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 2.0e-24 118.2 118 49.2
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 1.3e-23 115.5 189 40.7
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 4.9e-23 113.6 121 47.9
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.9e-23 113.6 86 61.6
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 5.1e-20 103.6 62 72.6
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 1.7e-12 78.6 63 63.5


User provided reference genes

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