Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR200530 Cardamine hirsuta HOM05D006389 ORTHO05D007863 1.7e-274 948.7 481 100.0
A03p05690 Brassica napus HOM05D006389 ORTHO05D007863 3.3e-230 801.6 482 84.2
C03p06650 Brassica napus HOM05D006389 ORTHO05D007863 2.8e-229 798.5 483 84.1
Sp6g31040 Schrenkiella parvula HOM05D006389 ORTHO05D007863 1.1e-228 796.6 481 83.4
AT5G12920 Arabidopsis thaliana HOM05D006389 ORTHO05D007863 8.5e-226 786.9 481 83.2
Carub.0006s1110 Capsella rubella HOM05D006389 ORTHO05D007863 1.2e-224 783.1 481 83.2
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 1.1e-222 776.5 484 82.4
AL6G23480 Arabidopsis lyrata HOM05D006389 ORTHO05D007863 5.7e-222 774.2 490 81.0
BolC3t13171H Brassica oleracea HOM05D006389 ORTHO05D007863 4.8e-221 771.2 523 77.2
BraA03t09908Z Brassica rapa HOM05D006389 ORTHO05D007863 1.5e-219 766.1 532 75.9
Thhalv10015483m.g Eutrema salsugineum HOM05D006389 ORTHO05D007863 1.1e-209 733.4 469 80.4
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 8.6e-186 654.1 471 69.2
THA.LOC104799096 Tarenaya hassleriana HOM05D006389 ORTHO05D007863 1.6e-179 633.3 478 66.1
Atru.chr3.2543 Acer truncatum HOM05D006389 ORTHO05D007863 2.4e-151 539.7 483 56.9
Cfa005620 Carpinus fangiana HOM05D006389 ORTHO05D007863 3.0e-146 522.7 477 55.6
CiPaw.14G122900 Carya illinoinensis HOM05D006389 ORTHO05D007863 3.9e-146 522.3 476 54.6
QL01p005900 Quercus lobata HOM05D006389 ORTHO05D007863 6.6e-146 521.5 473 55.4
Manes.06G168100 Manihot esculenta HOM05D006389 ORTHO05D007863 4.8e-144 515.4 473 54.8
COL.COLO4_24825 Corchorus olitorius HOM05D006389 ORTHO05D007863 1.5e-142 510.4 476 53.8
MD11G1027100 Malus domestica HOM05D006389 ORTHO05D007863 1.1e-140 504.2 476 53.2
RcHm_v2.0_Chr5g0077431 Rosa chinensis HOM05D006389 ORTHO05D007863 7.1e-140 501.5 474 53.2
Gohir.A09G115200 Gossypium hirsutum HOM05D006389 ORTHO05D007863 7.9e-139 498.0 469 53.1
Prupe.6G021400 Prunus persica HOM05D006389 ORTHO05D007863 1.0e-138 497.7 476 52.9
Gorai.006G129600 Gossypium raimondii HOM05D006389 ORTHO05D007863 1.3e-138 497.3 473 52.9
Gohir.D09G111800 Gossypium hirsutum HOM05D006389 ORTHO05D007863 8.7e-138 494.6 473 52.6
TWI34G0575 Tripterygium wilfordii HOM05D006389 ORTHO05D007863 1.5e-137 493.8 479 52.2
FvH4_3g43320 Fragaria vesca HOM05D006389 ORTHO05D007863 8.1e-136 488.0 472 51.7
FAN11G1995 Fragaria x ananassa HOM05D006389 ORTHO05D007863 1.4e-135 487.3 472 51.5
PGR102G3332 Punica granatum HOM05D006389 ORTHO05D007863 5.3e-135 485.3 473 51.6
AUR62019259 Chenopodium quinoa HOM05D006389 ORTHO05D007863 2.6e-134 483.0 490 50.4
Potri.001G016800 Populus trichocarpa HOM05D006389 ORTHO05D007863 1.3e-133 480.7 489 51.3
PSO339G5502 Papaver somniferum HOM05D006389 ORTHO05D007863 2.2e-133 479.9 478 51.3
ClCG03G013410 Citrullus lanatus HOM05D006389 ORTHO05D007863 1.1e-132 477.6 477 49.9
Sed0000566 Sechium edule HOM05D006389 ORTHO05D007863 1.1e-132 477.6 474 49.8
Glyma.11G130800 Glycine max HOM05D006389 ORTHO05D007863 5.5e-132 475.3 480 50.0
CsaV3_1G042620 Cucumis sativus L. HOM05D006389 ORTHO05D007863 1.2e-131 474.2 471 50.5
Lalb_Chr03g0026221 Lupinus albus HOM05D006389 ORTHO05D007863 1.2e-131 474.2 473 52.6
Oeu014062.1 Olea europaea HOM05D006389 ORTHO05D007863 1.6e-131 473.8 472 52.1
GSVIVG01025317001 Vitis vinifera HOM05D006389 ORTHO05D007863 2.7e-131 473.0 462 51.7
Migut.N02297 Erythranthe guttata HOM05D006389 ORTHO05D007863 1.8e-130 470.3 467 50.1
arahy.Tifrunner.gnm1.ann1.XMKE9J Arachis hypogaea HOM05D006389 ORTHO05D007863 1.9e-129 466.8 479 49.9
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 1.9e-129 466.8 503 49.9
TAR623G0704 Trochodendron aralioides HOM05D006389 ORTHO05D007863 1.9e-129 466.8 501 48.3
arahy.Tifrunner.gnm1.ann1.VM78M6 Arachis hypogaea HOM05D006389 ORTHO05D007863 1.3e-128 464.2 479 49.9
Cc01_g04330 Coffea canephora HOM05D006389 ORTHO05D007863 2.8e-128 463.0 479 50.5
Phvul.011G057100 Phaseolus vulgaris HOM05D006389 ORTHO05D007863 2.8e-128 463.0 479 49.9
Actinidia16300 Actinidia chinensis HOM05D006389 ORTHO05D007863 1.1e-127 461.1 476 51.9
FAN16G0020 Fragaria x ananassa HOM05D006389 ORTHO05D007863 1.4e-127 460.7 506 48.0
DCAR_023759 Daucus carota HOM05D006389 ORTHO05D007863 9.0e-127 458.0 477 48.6
CAN.G409.1 Capsicum annuum HOM05D006389 ORTHO05D007863 3.4e-126 456.1 472 48.1
Sopen11g021140 Solanum pennellii HOM05D006389 ORTHO05D007863 5.8e-126 455.3 473 48.0
Lj3g0001596 Lotus japonicus HOM05D006389 ORTHO05D007863 1.4e-124 450.7 472 50.4
Medtr4g066000 Medicago truncatula HOM05D006389 ORTHO05D007863 5.5e-124 448.7 477 49.9
Nitab4.5_0003250g0030 Nicotiana tabacum HOM05D006389 ORTHO05D007863 9.3e-124 448.0 459 48.4
Hund22074 Selenicereus undatus HOM05D006389 ORTHO05D007863 1.3e-122 444.1 481 48.0
VMungo1127G1170 Vigna mungo HOM05D006389 ORTHO05D007863 4.3e-121 439.1 523 44.7
Nn7g36087 Nelumbo nucifera HOM05D006389 ORTHO05D007863 1.3e-120 437.6 477 48.2
HanXRQChr13g0407081 Helianthus annuus HOM05D006389 ORTHO05D007863 6.9e-119 431.8 495 47.5
Psat0s3083g0200 Pisum sativum HOM05D006389 ORTHO05D007863 1.2e-118 431.0 477 48.0
Aqoxy1G00204 Aquilegia oxysepala HOM05D006389 ORTHO05D007863 6.5e-117 425.2 477 47.0
Sc16g0011670 Simmondsia chinensis HOM05D006389 ORTHO05D007863 7.9e-115 418.3 396 51.5
SGA_v2.0_scaffold3G01545 Striga asiatica HOM05D006389 ORTHO05D007863 7.4e-113 411.8 484 45.7
Lsat_1_v5_gn_2_101040 Lactuca sativa HOM05D006389 ORTHO05D007863 1.3e-112 411.0 480 46.2
Sabra01G0011800 Salix brachista HOM05D006389 ORTHO05D007863 1.7e-112 410.6 534 43.8
Thecc.09G225900 Theobroma cacao HOM05D006389 ORTHO05D007863 1.7e-112 410.6 390 53.3
FAN25G0313 Fragaria x ananassa HOM05D006389 ORTHO05D007863 1.8e-111 407.1 496 44.8
ECA238G3473 Erigeron canadensis HOM05D006389 ORTHO05D007863 2.4e-111 406.8 484 46.1
SalBow4G3167 Salvia bowleyana HOM05D006389 ORTHO05D007863 2.0e-110 403.7 511 41.3
Ah.02g115890 Amaranthus hybridus HOM05D006389 ORTHO05D007863 5.9e-110 402.1 472 45.1
Dinv36295 Davidia involucrata HOM05D006389 ORTHO05D007863 2.7e-107 393.3 389 49.6
Zm00001eb245730 Zea mays HOM05D006389 ORTHO05D007863 4.7e-107 392.5 479 46.3
HanXRQChr13g0407091 Helianthus annuus HOM05D006389 ORTHO05D007863 3.0e-106 389.8 491 44.4
vmacro04176 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 2.2e-104 383.6 389 51.4
Haze_10646 Corylus avellana HOM05D006389 ORTHO05D007863 1.4e-103 380.9 571 40.1
AUR62043581 Chenopodium quinoa HOM05D006389 ORTHO05D007863 3.1e-103 379.8 484 43.6
TPR.G13666 Trifolium pratense HOM05D006389 ORTHO05D007863 4.1e-103 379.4 461 45.8
HanXRQChr14g0453091 Helianthus annuus HOM05D006389 ORTHO05D007863 1.2e-102 377.9 532 41.5
AUR62000087 Chenopodium quinoa HOM05D006389 ORTHO05D007863 5.9e-102 375.6 479 43.8
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 5.5e-100 369.0 373 49.9
COL.COLO4_26371 Corchorus olitorius HOM05D006389 ORTHO05D007863 3.6e-99 366.3 438 46.1
SalBow4G2322 Salvia bowleyana HOM05D006389 ORTHO05D007863 1.4e-98 364.4 511 39.1
Os02g0591600 Oryza sativa ssp. japonica HOM05D006389 ORTHO05D007863 9.7e-97 358.2 476 43.9
MELO3C015208.2 Cucumis melo HOM05D006389 ORTHO05D007863 2.8e-96 356.7 455 43.1
CDE06G1860 Ceratophyllum demersum HOM05D006389 ORTHO05D007863 7.2e-92 342.0 329 48.6
Rhsim13G0224700 Rhododendron simsii HOM05D006389 ORTHO05D007863 1.8e-90 337.4 504 40.5
ATR0605G326 Amborella trichopoda HOM05D006389 ORTHO05D007863 6.3e-88 328.9 479 38.4
unitig_699.g19125 Utricularia gibba HOM05D006389 ORTHO05D007863 2.7e-83 313.5 326 45.1
HanXRQChr14g0455041 Helianthus annuus HOM05D006389 ORTHO05D007863 6.8e-82 308.9 322 49.7
HPP92_018945 Vanilla planifolia HOM05D006389 ORTHO05D007863 1.5e-76 291.2 484 34.9
Hma1.2p1_0728F.1_g209350 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 7.2e-76 288.9 257 54.9
Pp3c6_27180 Physcomitrium patens HOM05D006389 ORTHO05D007863 3.9e-69 266.5 486 34.6
PSO384G2577 Papaver somniferum HOM05D006389 ORTHO05D007863 5.2e-66 256.1 283 44.9
Eucgr.B03666 Eucalyptus grandis HOM05D006389 ORTHO05D007863 1.2e-65 255.0 282 44.3
Nitab4.5_0000175g0150 Nicotiana tabacum HOM05D006389 ORTHO05D007863 4.4e-65 253.1 293 43.7
Mapoly0014s0037 Marchantia polymorpha HOM05D006389 ORTHO05D007863 3.7e-64 250.0 520 31.9
Ca_20580_v3 Cicer arietinum L. HOM05D006389 ORTHO05D007863 6.4e-64 249.2 327 44.6
Solyc11g045510.3 Solanum lycopersicum HOM05D006389 ORTHO05D007863 4.1e-63 246.5 290 43.1
MSTRG.17573 Avicennia marina HOM05D006389 ORTHO05D007863 2.3e-53 214.2 190 56.8
Ciclev10018279m.g Citrus clementina HOM05D006389 ORTHO05D007863 5.1e-53 213.0 173 61.3
CSS0004435 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 1.6e-51 208.0 307 39.4
Ciclev10016567m.g Citrus clementina HOM05D006389 ORTHO05D007863 1.9e-47 194.5 230 44.8
AagrBONN_evm.TU.Sc2ySwM_228.3166 Anthoceros agrestis HOM05D006389 ORTHO05D007863 1.6e-46 191.4 439 29.8
Hma1.2p1_0728F.1_g209340 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 6.0e-46 189.5 193 50.3
MBI01_g14331_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 3.3e-44 183.7 157 56.7
Peaxi162Scf00559g00114 Petunia axillaris HOM05D006389 ORTHO05D007863 1.8e-42 177.9 190 43.2
SHI30505 Sapria himalayana HOM05D006389 ORTHO05D007863 1.4e-39 168.3 186 45.2
Lj1A361T11 Lonicera japonica HOM05D006389 ORTHO05D007863 4.4e-33 146.7 168 47.6
Nitab4.5_0000175g0160 Nicotiana tabacum HOM05D006389 ORTHO05D007863 1.1e-28 132.1 130 49.2
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 4.8e-27 126.7 355 26.2
HanXRQChr14g0450961 Helianthus annuus HOM05D006389 ORTHO05D007863 2.9e-24 117.5 191 35.1
SHI30507 Sapria himalayana HOM05D006389 ORTHO05D007863 2.3e-21 107.8 91 58.2
CSS0015492 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 8.7e-21 105.9 90 56.7
arahy.Tifrunner.gnm1.ann1.RII35Q Arachis hypogaea HOM05D006389 ORTHO05D007863 1.1e-18 99.0 281 33.5
Psat4g014880 Pisum sativum HOM05D006389 ORTHO05D007863 2.9e-16 90.9 151 39.1
Peaxi162Scf00185g00310 Petunia axillaris HOM05D006389 ORTHO05D007863 3.5e-14 84.0 137 37.2
HanXRQChr13g0389161 Helianthus annuus HOM05D006389 ORTHO05D007863 1.9e-12 78.2 53 64.2
vmacro04177 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 5.3e-10 70.1 79 46.8
SEGI_11371 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 7.2e-07 59.7 57 47.4
SEGI_20259 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 1.2e-06 58.9 71 39.4


User provided reference genes

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