Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR200230 Cardamine hirsuta HOM05D006285 ORTHO05D007249 1.9e-84 315.8 162 100.0
AL6G23830 Arabidopsis lyrata HOM05D006285 ORTHO05D007249 3.2e-52 208.8 152 75.7
AT5G13220 Arabidopsis thaliana HOM05D006285 ORTHO05D007249 7.2e-52 207.6 175 70.3
C09p63860 Brassica napus HOM05D006285 ORTHO05D007249 3.5e-51 205.3 152 74.3
A10p24990 Brassica napus HOM05D006285 ORTHO05D007249 2.3e-50 202.6 152 75.0
BraA10t44561Z Brassica rapa HOM05D006285 ORTHO05D007249 2.3e-50 202.6 152 75.0
BolC9t59226H Brassica oleracea HOM05D006285 ORTHO05D007249 6.7e-50 201.1 152 73.7
Sp6g30770 Schrenkiella parvula HOM05D006285 ORTHO05D007249 3.3e-49 198.7 168 69.0
BcaNung01870 Brassica carinata HOM05D006285 ORTHO05D007249 7.4e-49 197.6 175 65.7
BcaNung01871 Brassica carinata HOM05D006285 ORTHO05D007249 7.4e-49 197.6 175 65.7
Thhalv10014724m.g Eutrema salsugineum HOM05D006285 ORTHO05D007249 3.7e-48 195.3 176 68.2
BolC2t06542H Brassica oleracea HOM05D006285 ORTHO05D007249 1.1e-47 193.7 175 65.1
BraA02t05154Z Brassica rapa HOM05D006285 ORTHO05D007249 1.8e-47 193.0 175 64.6
A02p01780 Brassica napus HOM05D006285 ORTHO05D007249 3.1e-47 192.2 175 64.0
C02p05990 Brassica napus HOM05D006285 ORTHO05D007249 5.3e-47 191.4 175 64.6
Carub.0006s1139 Capsella rubella HOM05D006285 ORTHO05D007249 6.9e-47 191.0 181 64.6
BcaC04g19135 Brassica carinata HOM05D006285 ORTHO05D007249 1.0e-45 187.2 152 71.1
BcaNung01167 Brassica carinata HOM05D006285 ORTHO05D007249 7.2e-44 181.0 175 64.0
A03p05870 Brassica napus HOM05D006285 ORTHO05D007249 1.8e-39 166.4 153 65.4
BraA03t09926Z Brassica rapa HOM05D006285 ORTHO05D007249 1.8e-39 166.4 153 65.4
C03p06880 Brassica napus HOM05D006285 ORTHO05D007249 2.4e-39 166.0 152 65.8
BolC3t13190H Brassica oleracea HOM05D006285 ORTHO05D007249 2.4e-39 166.0 152 65.8
Aa31LG3G14440 Aethionema arabicum HOM05D006285 ORTHO05D007249 1.1e-36 157.1 141 65.2
THA.LOC104825472 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 3.2e-36 155.6 162 56.8
THA.LOC104803190 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 9.4e-36 154.1 164 56.1
Manes.08G102800 Manihot esculenta HOM05D006285 ORTHO05D007249 1.1e-28 130.6 184 42.9
Thecc.02G195800 Theobroma cacao HOM05D006285 ORTHO05D007249 1.8e-26 123.2 148 50.7
Ciclev10032858m.g Citrus clementina HOM05D006285 ORTHO05D007249 5.2e-26 121.7 137 54.0
Cpa.g.sc207.10 Carica papaya HOM05D006285 ORTHO05D007249 1.1e-25 120.6 164 47.0
QL03p050117 Quercus lobata HOM05D006285 ORTHO05D007249 1.1e-25 120.6 153 47.1
Manes.09G186200 Manihot esculenta HOM05D006285 ORTHO05D007249 2.0e-25 119.8 156 47.4
Gohir.D01G019500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 4.8e-24 115.2 146 53.4
Gorai.002G021800 Gossypium raimondii HOM05D006285 ORTHO05D007249 4.8e-24 115.2 146 53.4
PGR057G0008 Punica granatum HOM05D006285 ORTHO05D007249 1.1e-23 114.0 133 49.6
PGR119G0305 Punica granatum HOM05D006285 ORTHO05D007249 1.1e-23 114.0 133 49.6
GSVIVG01000967001 Vitis vinifera HOM05D006285 ORTHO05D007249 4.1e-23 112.1 160 45.6
Gorai.005G196200 Gossypium raimondii HOM05D006285 ORTHO05D007249 9.1e-23 110.9 142 48.6
COL.COLO4_20246 Corchorus olitorius HOM05D006285 ORTHO05D007249 1.2e-22 110.5 154 45.5
Gohir.D02G174500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 1.6e-22 110.2 142 47.9
TWI36G1029 Tripterygium wilfordii HOM05D006285 ORTHO05D007249 2.0e-22 109.8 187 40.1
CiPaw.06G107800 Carya illinoinensis HOM05D006285 ORTHO05D007249 5.9e-22 108.2 137 48.9
Sabra01G0044900 Salix brachista HOM05D006285 ORTHO05D007249 7.7e-22 107.8 172 43.0
TWI18G1468 Tripterygium wilfordii HOM05D006285 ORTHO05D007249 1.3e-21 107.1 150 44.0
Duzib248G1203 Durio zibethinus HOM05D006285 ORTHO05D007249 2.2e-21 106.3 149 43.6
Gohir.A03G151500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 2.2e-21 106.3 142 47.2
Potri.001G062500 Populus trichocarpa HOM05D006285 ORTHO05D007249 3.8e-21 105.5 148 45.3
CANSAT01G0254 Cannabis sativa HOM05D006285 ORTHO05D007249 5.0e-21 105.1 148 45.9
Oeu044502.1 Olea europaea HOM05D006285 ORTHO05D007249 8.5e-21 104.4 141 47.5
Gohir.A01G021000 Gossypium hirsutum HOM05D006285 ORTHO05D007249 1.1e-20 104.0 144 51.4
Potri.003G165000 Populus trichocarpa HOM05D006285 ORTHO05D007249 1.5e-20 103.6 146 43.2
Prupe.1G218500 Prunus persica HOM05D006285 ORTHO05D007249 1.5e-20 103.6 172 41.3
Cfa009427 Carpinus fangiana HOM05D006285 ORTHO05D007249 2.5e-20 102.8 134 48.5
ClCG06G001800 Citrullus lanatus HOM05D006285 ORTHO05D007249 2.5e-20 102.8 128 50.8
CiPaw.05G103600 Carya illinoinensis HOM05D006285 ORTHO05D007249 4.2e-20 102.1 142 48.6
MELO3C022348.2 Cucumis melo HOM05D006285 ORTHO05D007249 7.2e-20 101.3 129 47.3
Oeu019430.1 Olea europaea HOM05D006285 ORTHO05D007249 7.2e-20 101.3 141 46.1
MD13G1127100 Malus domestica HOM05D006285 ORTHO05D007249 1.6e-19 100.1 166 42.2
TAR622G0521 Trochodendron aralioides HOM05D006285 ORTHO05D007249 1.6e-19 100.1 152 42.1
Haze_12478 Corylus avellana HOM05D006285 ORTHO05D007249 4.7e-19 98.6 134 47.0
Dinv19860 Davidia involucrata HOM05D006285 ORTHO05D007249 6.1e-19 98.2 153 40.5
TAR374G0139 Trochodendron aralioides HOM05D006285 ORTHO05D007249 6.1e-19 98.2 161 41.0
MD16G1127400 Malus domestica HOM05D006285 ORTHO05D007249 1.4e-18 97.1 164 39.0
CsaV3_6G007840 Cucumis sativus L. HOM05D006285 ORTHO05D007249 1.8e-18 96.7 129 48.1
Actinidia22128 Actinidia chinensis HOM05D006285 ORTHO05D007249 2.3e-18 96.3 138 47.1
Duzib052G0121 Durio zibethinus HOM05D006285 ORTHO05D007249 2.3e-18 96.3 145 45.5
Sabra03G0120200 Salix brachista HOM05D006285 ORTHO05D007249 3.0e-18 95.9 139 43.9
Actinidia30601 Actinidia chinensis HOM05D006285 ORTHO05D007249 4.0e-18 95.5 138 47.1
Nn4g22189 Nelumbo nucifera HOM05D006285 ORTHO05D007249 5.2e-18 95.1 143 41.3
Atru.chr11.2411 Acer truncatum HOM05D006285 ORTHO05D007249 1.2e-17 94.0 161 40.4
MSTRG.467 Avicennia marina HOM05D006285 ORTHO05D007249 4.4e-17 92.0 175 35.4
Rhsim12G0098900 Rhododendron simsii HOM05D006285 ORTHO05D007249 1.3e-16 90.5 145 41.4
Peaxi162Scf00128g00175 Petunia axillaris HOM05D006285 ORTHO05D007249 1.7e-16 90.1 168 37.5
Actinidia09609 Actinidia chinensis HOM05D006285 ORTHO05D007249 2.8e-16 89.4 161 37.3
BcaB01g05368 Brassica carinata HOM05D006285 ORTHO05D007249 2.8e-16 89.4 142 45.1
PGR102G0288 Punica granatum HOM05D006285 ORTHO05D007249 4.8e-16 88.6 159 40.3
Actinidia34008 Actinidia chinensis HOM05D006285 ORTHO05D007249 6.3e-16 88.2 158 38.0
CSS0034430 Camellia sinensis var. sinensis HOM05D006285 ORTHO05D007249 6.3e-16 88.2 172 36.6
Sed0027998 Sechium edule HOM05D006285 ORTHO05D007249 3.1e-15 85.9 121 47.1
Eucgr.G01954 Eucalyptus grandis HOM05D006285 ORTHO05D007249 1.2e-14 84.0 98 50.0
Aqoxy5G03206 Aquilegia oxysepala HOM05D006285 ORTHO05D007249 2.7e-14 82.8 128 43.8
MSTRG.8043 Avicennia marina HOM05D006285 ORTHO05D007249 3.5e-14 82.4 142 38.7
EL10Ac6g13588 Beta vulgaris HOM05D006285 ORTHO05D007249 2.9e-13 79.3 152 40.1
Nn3g16318 Nelumbo nucifera HOM05D006285 ORTHO05D007249 1.5e-12 77.0 159 35.2
Sc11g0000190 Simmondsia chinensis HOM05D006285 ORTHO05D007249 1.9e-12 76.6 129 41.9
CDE02G4729 Ceratophyllum demersum HOM05D006285 ORTHO05D007249 3.2e-12 75.9 201 30.3
PGSC0003DMG400006480 Solanum tuberosum HOM05D006285 ORTHO05D007249 1.2e-11 73.9 128 39.8
ECA233G3183 Erigeron canadensis HOM05D006285 ORTHO05D007249 1.6e-11 73.6 99 43.4
Ah.03g135710 Amaranthus hybridus HOM05D000002 ORTHO05D000047 2.7e-11 72.8 139 38.8
ATR0582G164 Amborella trichopoda HOM05D006285 ORTHO05D007249 2.7e-11 72.8 163 33.7
Migut.K01038 Erythranthe guttata HOM05D006285 ORTHO05D007249 6.1e-11 71.6 109 43.1
CsaV3_4G002460 Cucumis sativus L. HOM05D006285 ORTHO05D007249 1.0e-10 70.9 154 37.7
SalBow2G0692 Salvia bowleyana HOM05D006285 ORTHO05D007249 1.4e-10 70.5 128 39.1
CDE06G1494 Ceratophyllum demersum HOM05D006285 ORTHO05D007249 3.0e-10 69.3 133 38.3
Sc04g0010480 Simmondsia chinensis HOM05D006285 ORTHO05D007249 4.0e-10 68.9 119 42.0
MELO3C017797.2 Cucumis melo HOM05D006285 ORTHO05D007249 1.2e-09 67.4 142 37.3
HanXRQChr08g0210081 Helianthus annuus HOM05D006285 ORTHO05D007249 2.0e-09 66.6 113 37.2
FAN12G2625 Fragaria x ananassa HOM05D006285 ORTHO05D007249 2.6e-09 66.2 148 35.8
RcHm_v2.0_Chr4g0429271 Rosa chinensis HOM05D006285 ORTHO05D007249 4.4e-09 65.5 143 39.9
FAN17G1869 Fragaria x ananassa HOM05D006285 ORTHO05D007249 5.7e-09 65.1 146 34.9
FvH4_4g23000 Fragaria vesca HOM05D006285 ORTHO05D007249 9.8e-09 64.3 148 34.5
FAN07G2449 Fragaria x ananassa HOM05D006285 ORTHO05D007249 9.8e-09 64.3 146 32.9
MBI07_g36277_MAGBIO Magnolia biondii HOM05D006285 ORTHO05D007249 1.3e-08 63.9 59 59.3
PSO478G0022 Papaver somniferum HOM05D006285 ORTHO05D007249 1.3e-08 63.9 147 34.7
HanXRQChr06g0175041 Helianthus annuus HOM05D006285 ORTHO05D007249 2.8e-08 62.8 91 40.7
PSO017G1512 Papaver somniferum HOM05D006285 ORTHO05D007249 2.8e-08 62.8 147 33.3
PSO732G0051 Papaver somniferum HOM05D006285 ORTHO05D007249 2.4e-07 59.7 129 34.1
Oeu055473.1 Olea europaea HOM05D006285 ORTHO05D007249 4.1e-07 58.9 164 32.9
PSO675G2785 Papaver somniferum HOM05D006285 ORTHO05D007249 4.1e-07 58.9 129 34.1
Lsat_1_v5_gn_3_31461 Lactuca sativa HOM05D006285 ORTHO05D007249 5.4e-07 58.5 130 36.2
AUR62028862 Chenopodium quinoa HOM05D006285 ORTHO05D007249 9.2e-07 57.8 103 41.7


User provided reference genes

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