Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR193670 Cardamine hirsuta HOM05D006587 ORTHO05D008487 5.5e-175 617.8 311 100.0
AT5G19300 Arabidopsis thaliana HOM05D006587 ORTHO05D008487 1.7e-163 579.7 316 92.7
Carub.0006s1763 Capsella rubella HOM05D006587 ORTHO05D008487 6.3e-163 577.8 313 92.7
AL6G30780 Arabidopsis lyrata HOM05D006587 ORTHO05D008487 1.1e-162 577.0 312 93.3
Thhalv10013731m.g Eutrema salsugineum HOM05D006587 ORTHO05D008487 1.8e-157 559.7 319 88.4
Sp6g25120 Schrenkiella parvula HOM05D006587 ORTHO05D008487 1.8e-157 559.7 312 90.4
C09p56970 Brassica napus HOM05D006587 ORTHO05D008487 1.6e-150 536.6 310 86.8
BolC9t58560H Brassica oleracea HOM05D006587 ORTHO05D008487 4.7e-150 535.0 303 87.8
BcaC04g18580 Brassica carinata HOM05D006587 ORTHO05D008487 1.8e-149 533.1 303 87.5
A10p20380 Brassica napus HOM05D006587 ORTHO05D008487 1.8e-149 533.1 295 88.5
BcaB08g36587 Brassica carinata HOM05D006587 ORTHO05D008487 4.0e-149 531.9 304 86.8
BraA10t44108Z Brassica rapa HOM05D006587 ORTHO05D008487 9.8e-148 527.3 301 87.0
Aa31LG11G10390 Aethionema arabicum HOM05D006587 ORTHO05D008487 3.1e-138 495.7 311 81.4
Manes.03G181700 Manihot esculenta HOM05D006587 ORTHO05D008487 2.0e-132 476.5 308 77.3
THA.LOC104818820 Tarenaya hassleriana HOM05D006587 ORTHO05D008487 4.4e-132 475.3 300 78.7
Prupe.1G154500 Prunus persica HOM05D006587 ORTHO05D008487 1.6e-129 466.8 314 73.6
GSVIVG01017920001 Vitis vinifera HOM05D006587 ORTHO05D008487 1.6e-129 466.8 303 74.9
Potri.008G149800 Populus trichocarpa HOM05D006587 ORTHO05D008487 1.7e-128 463.4 303 75.9
FAN07G2036 Fragaria x ananassa HOM05D006587 ORTHO05D008487 1.5e-127 460.3 299 75.3
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 1.5e-127 460.3 299 75.3
TAR362G0294 Trochodendron aralioides HOM05D006587 ORTHO05D008487 1.9e-127 459.9 312 73.1
CSS0008441 Camellia sinensis var. sinensis HOM05D006587 ORTHO05D008487 9.5e-127 457.6 304 74.3
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 1.6e-126 456.8 320 71.9
Gohir.D01G021600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 2.1e-126 456.4 321 70.4
Hma1.2p1_0511F.1_g168960 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 2.1e-126 456.4 302 74.2
TWI73G1280 Tripterygium wilfordii HOM05D006587 ORTHO05D008487 6.2e-126 454.9 311 71.7
Gorai.002G024100 Gossypium raimondii HOM05D006587 ORTHO05D008487 8.0e-126 454.5 321 70.7
Thecc.04G226500 Theobroma cacao HOM05D006587 ORTHO05D008487 1.1e-125 454.1 305 72.8
ClCG05G005300 Citrullus lanatus HOM05D006587 ORTHO05D008487 1.8e-125 453.4 318 71.1
RcHm_v2.0_Chr4g0417131 Rosa chinensis HOM05D006587 ORTHO05D008487 2.3e-125 453.0 299 73.9
MELO3C006549.2 Cucumis melo HOM05D006587 ORTHO05D008487 4.0e-125 452.2 317 71.6
Rhsim04G0204300 Rhododendron simsii HOM05D006587 ORTHO05D008487 4.0e-125 452.2 304 73.0
Gohir.A01G023600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 5.2e-125 451.8 321 70.1
Actinidia23494 Actinidia chinensis HOM05D006587 ORTHO05D008487 6.8e-125 451.4 304 73.4
MD13G1186800 Malus domestica HOM05D006587 ORTHO05D008487 8.9e-125 451.1 299 74.2
MD16G1187700 Malus domestica HOM05D006587 ORTHO05D008487 1.2e-124 450.7 316 72.2
CsaV3_3G013530 Cucumis sativus L. HOM05D006587 ORTHO05D008487 1.5e-124 450.3 317 71.3
TAR633G1367 Trochodendron aralioides HOM05D006587 ORTHO05D008487 3.4e-124 449.1 311 72.0
Actinidia40165 Actinidia chinensis HOM05D006587 ORTHO05D008487 4.4e-124 448.7 300 74.7
Atru.chr4.2522 Acer truncatum HOM05D006587 ORTHO05D008487 1.7e-123 446.8 303 71.6
Eucgr.H03560 Eucalyptus grandis HOM05D006587 ORTHO05D008487 2.9e-123 446.0 306 71.9
Sc19g0004360 Simmondsia chinensis HOM05D006587 ORTHO05D008487 2.9e-123 446.0 303 73.6
Ciclev10005176m.g Citrus clementina HOM05D006587 ORTHO05D008487 3.7e-123 445.7 306 72.9
CANSAT78G1956 Cannabis sativa HOM05D006587 ORTHO05D008487 6.4e-123 444.9 303 72.9
Cc03_g03390 Coffea canephora HOM05D006587 ORTHO05D008487 1.1e-122 444.1 302 71.2
PGR004G2885 Punica granatum HOM05D006587 ORTHO05D008487 1.1e-122 444.1 311 71.7
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 5.4e-122 441.8 299 73.9
CiPaw.02G094600 Carya illinoinensis HOM05D006587 ORTHO05D008487 1.2e-121 440.7 317 70.0
ECA236G2554 Erigeron canadensis HOM05D006587 ORTHO05D008487 2.7e-121 439.5 301 71.4
Sed0010167 Sechium edule HOM05D006587 ORTHO05D008487 4.6e-121 438.7 307 72.3
PSO170G4636 Papaver somniferum HOM05D006587 ORTHO05D008487 1.3e-120 437.2 306 70.3
PSO302G0285 Papaver somniferum HOM05D006587 ORTHO05D008487 3.9e-120 435.6 306 70.3
MSTRG.24750 Avicennia marina HOM05D006587 ORTHO05D008487 5.1e-120 435.3 300 73.7
Lsat_1_v5_gn_9_80941 Lactuca sativa HOM05D006587 ORTHO05D008487 6.6e-120 434.9 297 71.7
Solyc01g079710.3 Solanum lycopersicum HOM05D006587 ORTHO05D008487 1.1e-119 434.1 317 67.8
CAN.G69.11 Capsicum annuum HOM05D006587 ORTHO05D008487 1.9e-119 433.3 315 68.3
Sopen01g031480 Solanum pennellii HOM05D006587 ORTHO05D008487 2.5e-119 433.0 317 67.5
Sabra08G0113900 Salix brachista HOM05D006587 ORTHO05D008487 7.3e-119 431.4 297 74.1
DCAR_002398 Daucus carota HOM05D006587 ORTHO05D008487 9.5e-119 431.0 313 69.0
Migut.N00169 Erythranthe guttata HOM05D006587 ORTHO05D008487 9.5e-119 431.0 300 71.7
Nitab4.5_0000144g0120 Nicotiana tabacum HOM05D006587 ORTHO05D008487 1.2e-118 430.6 303 70.3
HanXRQChr13g0400281 Helianthus annuus HOM05D006587 ORTHO05D008487 4.7e-118 428.7 317 67.5
Lalb_Chr06g0164781 Lupinus albus HOM05D006587 ORTHO05D008487 4.7e-118 428.7 299 70.9
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 5.2e-117 425.2 285 73.0
Glyma.20G143100 Glycine max HOM05D006587 ORTHO05D008487 8.9e-117 424.5 306 69.0
VMungo0720G0184 Vigna mungo HOM05D006587 ORTHO05D008487 8.9e-117 424.5 298 70.5
TPR.G5533 Trifolium pratense HOM05D006587 ORTHO05D008487 1.2e-116 424.1 299 70.2
Lj5g0006939 Lotus japonicus HOM05D006587 ORTHO05D008487 2.0e-116 423.3 299 69.6
Os04g0244500 Oryza sativa ssp. japonica HOM05D006587 ORTHO05D008487 2.0e-116 423.3 299 70.9
Ca_10966_v3 Cicer arietinum L. HOM05D006587 ORTHO05D008487 2.6e-116 422.9 299 69.2
Medtr1g105065 Medicago truncatula HOM05D006587 ORTHO05D008487 2.6e-116 422.9 314 68.2
SalBow5G0644 Salvia bowleyana HOM05D006587 ORTHO05D008487 2.2e-115 419.9 315 68.6
Potri.010G091400 Populus trichocarpa HOM05D006587 ORTHO05D008487 2.9e-115 419.5 304 69.7
PGSC0003DMG400008999 Solanum tuberosum HOM05D006587 ORTHO05D008487 3.7e-115 419.1 351 61.5
EL10As3g23313 Beta vulgaris HOM05D006587 ORTHO05D008487 1.4e-114 417.2 301 67.8
arahy.Tifrunner.gnm1.ann1.HZWC9V Arachis hypogaea HOM05D006587 ORTHO05D008487 2.4e-114 416.4 300 70.7
arahy.Tifrunner.gnm1.ann1.G9UJER Arachis hypogaea HOM05D006587 ORTHO05D008487 7.1e-114 414.8 301 70.8
HPP92_010726 Vanilla planifolia HOM05D006587 ORTHO05D008487 7.1e-114 414.8 313 65.5
Ah.13g074000 Amaranthus hybridus HOM05D006587 ORTHO05D008487 9.2e-114 414.5 303 67.3
Phvul.007G053900 Phaseolus vulgaris HOM05D006587 ORTHO05D008487 7.8e-113 411.4 302 67.9
Psat6g209880 Pisum sativum HOM05D006587 ORTHO05D008487 1.0e-112 411.0 309 66.7
Haze_00934 Corylus avellana HOM05D006587 ORTHO05D008487 2.3e-112 409.8 302 68.9
MBI17_g12493_MAGBIO Magnolia biondii HOM05D006587 ORTHO05D008487 5.1e-112 408.7 278 70.1
Peaxi162Scf01336g00122 Petunia axillaris HOM05D006587 ORTHO05D008487 1.9e-111 406.8 306 67.6
Hma1.2p1_0511F.1_g168950 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 3.1e-109 399.4 286 68.2
Aqoxy2G03329 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 4.4e-108 395.6 314 63.7
Dinv44504 Davidia involucrata HOM05D006587 ORTHO05D008487 4.4e-108 395.6 244 76.6
SalBow5G2730 Salvia bowleyana HOM05D006587 ORTHO05D008487 8.4e-107 391.3 299 66.9
Dinv38415 Davidia involucrata HOM05D006587 ORTHO05D008487 5.1e-104 382.1 258 74.0
SGA_v2.0_scaffold10G05110 Striga asiatica HOM05D006587 ORTHO05D008487 4.8e-102 375.6 337 59.1
Nitab4.5_0000180g0030 Nicotiana tabacum HOM05D006587 ORTHO05D008487 7.1e-98 361.7 301 62.1
Lj3A741G38 Lonicera japonica HOM05D006587 ORTHO05D008487 1.6e-97 360.5 289 64.4
AUR62043415 Chenopodium quinoa HOM05D006587 ORTHO05D008487 3.5e-97 359.4 262 65.6
Cpa.g.sc147.29 Carica papaya HOM05D006587 ORTHO05D008487 5.1e-96 355.5 235 75.3
QL06p003535 Quercus lobata HOM05D006587 ORTHO05D008487 2.1e-94 350.1 241 71.8
SMO364G0578 Selaginella moellendorffii HOM05D006587 ORTHO05D008487 4.9e-91 339.0 308 57.1
Pp3c7_20660 Physcomitrium patens HOM05D006587 ORTHO05D008487 1.1e-90 337.8 301 57.8
Sabra10G0051900 Salix brachista HOM05D006587 ORTHO05D008487 6.7e-88 328.6 300 57.3
ATR0626G244 Amborella trichopoda HOM05D006587 ORTHO05D008487 4.3e-87 325.9 271 61.3
Mapoly0049s0075 Marchantia polymorpha HOM05D006587 ORTHO05D008487 1.6e-86 323.9 302 54.3
Duzib151G0305 Durio zibethinus HOM05D006587 ORTHO05D008487 1.0e-80 304.7 302 57.0
unitig_899.g15640 Utricularia gibba HOM05D006587 ORTHO05D008487 1.8e-80 303.9 297 56.2
Aqoxy2G03328 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 7.6e-76 288.5 302 56.6
PRCOL_00002662 Prasinoderma coloniale HOM05D006587 ORTHO05D008487 5.5e-74 282.3 323 47.7
AUR62038173 Chenopodium quinoa HOM05D006587 ORTHO05D008487 1.2e-73 281.2 273 54.2
Zm00001eb373340 Zea mays HOM05D006587 ORTHO05D008487 1.1e-71 274.6 202 68.8
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 2.7e-65 253.4 240 57.5
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 3.9e-64 249.6 230 58.3
FvH4_4g14960 Fragaria vesca HOM05D006587 ORTHO05D008487 8.2e-62 241.9 163 73.0
CDE05G0907 Ceratophyllum demersum HOM05D006587 ORTHO05D008487 4.4e-55 219.5 164 69.5
Cfa024389 Carpinus fangiana HOM05D006587 ORTHO05D008487 2.9e-51 206.8 368 37.2
Cre16.g670617 Chlamydomonas reinhardtii HOM05D006587 ORTHO05D008487 1.4e-48 198.0 340 35.6
Oeu040660.1 Olea europaea HOM05D006587 ORTHO05D008487 5.2e-48 196.1 148 67.6
AagrBONN_evm.TU.Sc2ySwM_340.504 Anthoceros agrestis HOM05D006587 ORTHO05D008487 2.6e-47 193.7 180 58.3
COL.COLO4_06205 Corchorus olitorius HOM05D006587 ORTHO05D008487 1.2e-44 184.9 199 55.3
Glyma.10G250600 Glycine max HOM05D006587 ORTHO05D008487 6.1e-41 172.6 117 73.5
Lalb_Chr02g0144661 Lupinus albus HOM05D006587 ORTHO05D008487 3.7e-38 163.3 181 50.8
QL06p003531 Quercus lobata HOM05D006587 ORTHO05D008487 1.5e-26 124.8 76 76.3
Lalb_Chr02g0144651 Lupinus albus HOM05D006587 ORTHO05D008487 4.6e-12 76.6 57 61.4
Lsat_1_v5_gn_9_31900 Lactuca sativa HOM05D006587 ORTHO05D011576 6.0e-12 76.3 71 50.7
SEGI_15408 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 1.5e-10 71.6 46 67.4
arahy.Tifrunner.gnm1.ann1.Y836FI Arachis hypogaea HOM05D000158 ORTHO05D000197 2.5e-10 70.9 40 77.5
TAR362G0446 Trochodendron aralioides HOM05D006587 ORTHO05D008487 5.6e-10 69.7 51 70.6
Gorai.012G092500 Gossypium raimondii HOM05D006587 ORTHO05D008487 9.5e-10 68.9 49 71.4
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 2.1e-09 67.8 102 40.2
SEGI_20820 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 3.6e-09 67.0 52 73.1
PSO151G0052 Papaver somniferum HOM05D004736 ORTHO05D030424 4.7e-09 66.6 73 46.6
Gorai.004G106600 Gossypium raimondii HOM05D006587 ORTHO05D008487 4.0e-08 63.5 39 82.1


User provided reference genes

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